EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOANG00000007434 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ornithorhynchus_anatinus
Status: putative
Strand: Minus strand
Length: 38241 bases
Position: chrContig3434:2530-40770
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOANP00000011839	LSM	PF01423.22	9.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOANT00000011841	LSM4-201	521	-	ENSOANP00000011839	116 (aa)	-	F6XTR8

Gene Model

Click here to download ENSOANG00000007434's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOANG00000007434's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOANG00000007434	LSM4	71	31.765	ENSOANG00000005398	LSM2	67	36.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOANG00000007434	LSM4	78	93.407	ENSG00000130520	LSM4	97	69.014	Homo_sapiens
ENSOANG00000007434	LSM4	88	93.137	ENSAPOG00000005643	lsm4	58	94.505	Acanthochromis_polyacanthus
ENSOANG00000007434	LSM4	79	93.478	ENSAMEG00000011162	LSM4	60	93.478	Ailuropoda_melanoleuca
ENSOANG00000007434	LSM4	88	93.137	ENSAOCG00000006414	lsm4	59	94.505	Amphiprion_ocellaris
ENSOANG00000007434	LSM4	88	93.137	ENSAPEG00000006238	lsm4	58	94.505	Amphiprion_percula
ENSOANG00000007434	LSM4	88	93.137	ENSATEG00000016559	lsm4	57	94.505	Anabas_testudineus
ENSOANG00000007434	LSM4	78	93.407	ENSANAG00000034659	LSM4	61	98.630	Aotus_nancymaae
ENSOANG00000007434	LSM4	97	80.315	ENSACLG00000022738	lsm4	59	94.505	Astatotilapia_calliptera
ENSOANG00000007434	LSM4	88	93.137	ENSAMXG00000016932	lsm4	61	93.407	Astyanax_mexicanus
ENSOANG00000007434	LSM4	79	93.478	ENSBTAG00000008578	LSM4	63	93.478	Bos_taurus
ENSOANG00000007434	LSM4	74	72.093	WBGene00003078	lsm-4	67	72.093	Caenorhabditis_elegans
ENSOANG00000007434	LSM4	78	93.407	ENSCJAG00000014171	LSM4	58	98.630	Callithrix_jacchus
ENSOANG00000007434	LSM4	78	93.407	ENSCAFG00000014900	LSM4	57	93.407	Canis_familiaris
ENSOANG00000007434	LSM4	78	93.407	ENSCAFG00020012137	LSM4	63	93.407	Canis_lupus_dingo
ENSOANG00000007434	LSM4	79	93.478	ENSCHIG00000010928	LSM4	58	93.478	Capra_hircus
ENSOANG00000007434	LSM4	78	92.308	ENSTSYG00000030906	LSM4	63	92.308	Carlito_syrichta
ENSOANG00000007434	LSM4	78	92.308	ENSCAPG00000014140	LSM4	63	92.308	Cavia_aperea
ENSOANG00000007434	LSM4	78	92.308	ENSCPOG00000024117	LSM4	63	92.308	Cavia_porcellus
ENSOANG00000007434	LSM4	78	93.407	ENSCCAG00000036308	LSM4	58	98.630	Cebus_capucinus
ENSOANG00000007434	LSM4	78	93.407	ENSCATG00000029311	LSM4	99	69.444	Cercocebus_atys
ENSOANG00000007434	LSM4	78	93.407	ENSCLAG00000010828	LSM4	63	93.407	Chinchilla_lanigera
ENSOANG00000007434	LSM4	78	93.407	ENSCSAG00000005370	LSM4	63	93.407	Chlorocebus_sabaeus
ENSOANG00000007434	LSM4	99	93.913	ENSCPBG00000012925	LSM4	80	93.913	Chrysemys_picta_bellii
ENSOANG00000007434	LSM4	77	87.640	ENSCING00000007519	-	69	87.912	Ciona_intestinalis
ENSOANG00000007434	LSM4	77	87.640	ENSCSAVG00000008596	-	70	87.912	Ciona_savignyi
ENSOANG00000007434	LSM4	78	93.407	ENSCANG00000043686	LSM4	99	67.568	Colobus_angolensis_palliatus
ENSOANG00000007434	LSM4	78	90.110	ENSCGRG00001014436	Lsm4	62	90.110	Cricetulus_griseus_chok1gshd
ENSOANG00000007434	LSM4	78	90.110	ENSCGRG00000009398	Lsm4	63	90.110	Cricetulus_griseus_crigri
ENSOANG00000007434	LSM4	86	92.000	ENSCSEG00000016127	lsm4	61	93.407	Cynoglossus_semilaevis
ENSOANG00000007434	LSM4	74	95.349	ENSCVAG00000021828	lsm4	57	97.333	Cyprinodon_variegatus
ENSOANG00000007434	LSM4	88	92.157	ENSCVAG00000010601	lsm4	61	93.407	Cyprinodon_variegatus
ENSOANG00000007434	LSM4	88	93.137	ENSDARG00000023852	lsm4	57	100.000	Danio_rerio
ENSOANG00000007434	LSM4	78	92.308	ENSDORG00000024225	Lsm4	63	92.308	Dipodomys_ordii
ENSOANG00000007434	LSM4	86	77.000	FBgn0032240	CG17768	56	82.418	Drosophila_melanogaster
ENSOANG00000007434	LSM4	63	97.260	ENSETEG00000007762	-	59	97.260	Echinops_telfairi
ENSOANG00000007434	LSM4	72	83.133	ENSEBUG00000003639	-	52	83.133	Eptatretus_burgeri
ENSOANG00000007434	LSM4	97	92.035	ENSELUG00000012821	lsm4	82	92.035	Esox_lucius
ENSOANG00000007434	LSM4	78	93.407	ENSFCAG00000040580	LSM4	58	98.630	Felis_catus
ENSOANG00000007434	LSM4	100	94.828	ENSFALG00000009478	LSM4	81	94.828	Ficedula_albicollis
ENSOANG00000007434	LSM4	78	93.407	ENSFDAG00000010124	LSM4	63	93.407	Fukomys_damarensis
ENSOANG00000007434	LSM4	87	94.059	ENSGMOG00000007729	lsm4	60	94.565	Gadus_morhua
ENSOANG00000007434	LSM4	99	94.783	ENSGALG00000003385	LSM4	80	94.783	Gallus_gallus
ENSOANG00000007434	LSM4	97	79.528	ENSGAFG00000004903	lsm4	55	95.890	Gambusia_affinis
ENSOANG00000007434	LSM4	84	93.878	ENSGACG00000008140	lsm4	58	94.505	Gasterosteus_aculeatus
ENSOANG00000007434	LSM4	99	93.913	ENSGAGG00000017812	LSM4	80	93.913	Gopherus_agassizii
ENSOANG00000007434	LSM4	78	93.407	ENSGGOG00000012914	-	99	69.444	Gorilla_gorilla
ENSOANG00000007434	LSM4	78	93.407	ENSHGLG00000006568	LSM4	63	93.407	Heterocephalus_glaber_female
ENSOANG00000007434	LSM4	83	92.708	ENSHGLG00100007894	LSM4	99	92.708	Heterocephalus_glaber_male
ENSOANG00000007434	LSM4	88	93.137	ENSHCOG00000008819	lsm4	61	94.505	Hippocampus_comes
ENSOANG00000007434	LSM4	99	92.241	ENSIPUG00000005368	Lsm4	78	92.241	Ictalurus_punctatus
ENSOANG00000007434	LSM4	78	93.407	ENSSTOG00000016494	LSM4	63	93.407	Ictidomys_tridecemlineatus
ENSOANG00000007434	LSM4	78	91.209	ENSJJAG00000017420	Lsm4	63	91.209	Jaculus_jaculus
ENSOANG00000007434	LSM4	77	93.258	ENSKMAG00000005073	lsm4	60	93.407	Kryptolebias_marmoratus
ENSOANG00000007434	LSM4	88	93.137	ENSLBEG00000027930	lsm4	58	94.505	Labrus_bergylta
ENSOANG00000007434	LSM4	78	94.505	ENSLACG00000015861	LSM4	62	94.505	Latimeria_chalumnae
ENSOANG00000007434	LSM4	89	92.233	ENSLOCG00000002025	lsm4	62	93.407	Lepisosteus_oculatus
ENSOANG00000007434	LSM4	79	92.391	ENSLAFG00000017459	LSM4	63	92.391	Loxodonta_africana
ENSOANG00000007434	LSM4	78	93.407	ENSMFAG00000031194	LSM4	99	67.568	Macaca_fascicularis
ENSOANG00000007434	LSM4	78	93.407	ENSMMUG00000004405	LSM4	58	98.630	Macaca_mulatta
ENSOANG00000007434	LSM4	78	93.407	ENSMNEG00000042899	LSM4	99	67.568	Macaca_nemestrina
ENSOANG00000007434	LSM4	78	93.407	ENSMLEG00000027948	LSM4	99	69.444	Mandrillus_leucophaeus
ENSOANG00000007434	LSM4	97	80.315	ENSMAMG00000006190	lsm4	61	94.505	Mastacembelus_armatus
ENSOANG00000007434	LSM4	97	80.315	ENSMZEG00005016420	lsm4	60	94.505	Maylandia_zebra
ENSOANG00000007434	LSM4	98	94.737	ENSMGAG00000004976	LSM4	79	94.737	Meleagris_gallopavo
ENSOANG00000007434	LSM4	89	92.233	ENSMICG00000000222	LSM4	58	98.630	Microcebus_murinus
ENSOANG00000007434	LSM4	78	90.110	ENSMOCG00000020861	Lsm4	62	90.110	Microtus_ochrogaster
ENSOANG00000007434	LSM4	84	96.907	ENSMODG00000015044	-	78	96.907	Monodelphis_domestica
ENSOANG00000007434	LSM4	88	92.157	ENSMALG00000018159	lsm4	61	93.407	Monopterus_albus
ENSOANG00000007434	LSM4	78	90.110	MGP_CAROLIEiJ_G0031158	Lsm4	62	90.110	Mus_caroli
ENSOANG00000007434	LSM4	78	90.110	ENSMUSG00000031848	Lsm4	83	83.516	Mus_musculus
ENSOANG00000007434	LSM4	78	90.110	MGP_PahariEiJ_G0021623	Lsm4	62	90.110	Mus_pahari
ENSOANG00000007434	LSM4	78	90.110	MGP_SPRETEiJ_G0032276	Lsm4	62	90.110	Mus_spretus
ENSOANG00000007434	LSM4	78	93.407	ENSMPUG00000015589	LSM4	63	93.407	Mustela_putorius_furo
ENSOANG00000007434	LSM4	79	93.478	ENSMLUG00000004010	LSM4	63	93.478	Myotis_lucifugus
ENSOANG00000007434	LSM4	78	90.110	ENSNGAG00000008644	Lsm4	63	90.110	Nannospalax_galili
ENSOANG00000007434	LSM4	89	93.204	ENSNBRG00000022150	lsm4	54	94.565	Neolamprologus_brichardi
ENSOANG00000007434	LSM4	63	95.890	ENSMEUG00000013229	LSM4	59	95.890	Notamacropus_eugenii
ENSOANG00000007434	LSM4	77	94.382	ENSOPRG00000005575	LSM4	61	97.260	Ochotona_princeps
ENSOANG00000007434	LSM4	78	93.407	ENSODEG00000020549	-	63	93.407	Octodon_degus
ENSOANG00000007434	LSM4	78	83.516	ENSODEG00000004519	-	63	83.516	Octodon_degus
ENSOANG00000007434	LSM4	97	80.315	ENSONIG00000012724	lsm4	59	94.505	Oreochromis_niloticus
ENSOANG00000007434	LSM4	97	79.528	ENSORLG00000008391	lsm4	60	93.407	Oryzias_latipes
ENSOANG00000007434	LSM4	97	79.528	ENSORLG00020014829	lsm4	60	93.407	Oryzias_latipes_hni
ENSOANG00000007434	LSM4	97	79.528	ENSORLG00015010205	lsm4	60	93.407	Oryzias_latipes_hsok
ENSOANG00000007434	LSM4	97	79.528	ENSOMEG00000003606	lsm4	60	93.407	Oryzias_melastigma
ENSOANG00000007434	LSM4	90	92.308	ENSOGAG00000027992	LSM4	60	93.478	Otolemur_garnettii
ENSOANG00000007434	LSM4	78	93.407	ENSOARG00000012553	LSM4	57	98.630	Ovis_aries
ENSOANG00000007434	LSM4	78	93.407	ENSPPAG00000044045	-	60	98.630	Pan_paniscus
ENSOANG00000007434	LSM4	78	93.407	ENSPPRG00000018264	LSM4	58	98.630	Panthera_pardus
ENSOANG00000007434	LSM4	78	93.407	ENSPTIG00000006306	LSM4	63	93.407	Panthera_tigris_altaica
ENSOANG00000007434	LSM4	78	93.407	ENSPTRG00000031470	LSM4	60	98.630	Pan_troglodytes
ENSOANG00000007434	LSM4	78	93.407	ENSPANG00000014399	LSM4	99	69.444	Papio_anubis
ENSOANG00000007434	LSM4	89	92.233	ENSPKIG00000006154	lsm4	58	98.667	Paramormyrops_kingsleyae
ENSOANG00000007434	LSM4	99	93.913	ENSPSIG00000012358	LSM4	81	93.913	Pelodiscus_sinensis
ENSOANG00000007434	LSM4	79	89.130	ENSPEMG00000001358	Lsm4	62	90.110	Peromyscus_maniculatus_bairdii
ENSOANG00000007434	LSM4	94	90.826	ENSPLAG00000016267	lsm4	61	94.505	Poecilia_latipinna
ENSOANG00000007434	LSM4	98	81.452	ENSPMEG00000016378	lsm4	63	94.565	Poecilia_mexicana
ENSOANG00000007434	LSM4	78	93.407	ENSPPYG00000009736	LSM4	63	93.407	Pongo_abelii
ENSOANG00000007434	LSM4	63	97.260	ENSPCAG00000008513	LSM4	59	97.260	Procavia_capensis
ENSOANG00000007434	LSM4	89	92.233	ENSPCOG00000019837	LSM4	58	98.630	Propithecus_coquereli
ENSOANG00000007434	LSM4	78	93.407	ENSPVAG00000015383	LSM4	63	93.407	Pteropus_vampyrus
ENSOANG00000007434	LSM4	97	80.315	ENSPNYG00000016794	lsm4	60	94.505	Pundamilia_nyererei
ENSOANG00000007434	LSM4	97	92.035	ENSPNAG00000016598	lsm4	81	92.035	Pygocentrus_nattereri
ENSOANG00000007434	LSM4	78	90.110	ENSRNOG00000019572	Lsm4	62	90.110	Rattus_norvegicus
ENSOANG00000007434	LSM4	78	93.407	ENSRBIG00000024717	LSM4	99	68.919	Rhinopithecus_bieti
ENSOANG00000007434	LSM4	78	93.407	ENSRROG00000045706	LSM4	99	68.919	Rhinopithecus_roxellana
ENSOANG00000007434	LSM4	74	37.500	YER112W	LSM4	50	37.755	Saccharomyces_cerevisiae
ENSOANG00000007434	LSM4	63	98.630	ENSSBOG00000022455	LSM4	58	98.630	Saimiri_boliviensis_boliviensis
ENSOANG00000007434	LSM4	99	93.043	ENSSHAG00000011559	LSM4	80	93.043	Sarcophilus_harrisii
ENSOANG00000007434	LSM4	89	92.233	ENSSFOG00015021067	lsm4	62	94.505	Scleropages_formosus
ENSOANG00000007434	LSM4	88	92.157	ENSSMAG00000021020	lsm4	58	94.505	Scophthalmus_maximus
ENSOANG00000007434	LSM4	88	93.137	ENSSDUG00000009588	lsm4	52	94.505	Seriola_dumerili
ENSOANG00000007434	LSM4	88	93.137	ENSSLDG00000006827	lsm4	52	94.505	Seriola_lalandi_dorsalis
ENSOANG00000007434	LSM4	98	93.860	ENSSPUG00000010166	LSM4	71	93.860	Sphenodon_punctatus
ENSOANG00000007434	LSM4	88	93.137	ENSSPAG00000011615	lsm4	58	94.505	Stegastes_partitus
ENSOANG00000007434	LSM4	78	93.407	ENSSSCG00000034314	LSM4	63	93.407	Sus_scrofa
ENSOANG00000007434	LSM4	97	78.740	ENSTRUG00000021737	lsm4	61	92.308	Takifugu_rubripes
ENSOANG00000007434	LSM4	97	78.906	ENSTNIG00000010191	lsm4	60	93.407	Tetraodon_nigroviridis
ENSOANG00000007434	LSM4	79	93.478	ENSUAMG00000000665	LSM4	72	93.407	Ursus_americanus
ENSOANG00000007434	LSM4	78	93.407	ENSUMAG00000009013	LSM4	63	93.407	Ursus_maritimus
ENSOANG00000007434	LSM4	89	93.204	ENSXETG00000024933	lsm4	63	93.407	Xenopus_tropicalis