EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOANG00000007729 (Gene tree)
Gene ID: 100081275
Gene Symbol: CPSF4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Ornithorhynchus_anatinus
Status: putative
Strand: Minus strand
Length: 7866 bases
Position: chr2:24217147-24225012
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOANP00000012315	zf-CCCH	PF00642.24	1.1e-20	1	2
ENSOANP00000012315	zf-CCCH	PF00642.24	1.1e-20	2	2
ENSOANP00000012315	zf-CCHC	PF00098.23	2.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOANT00000012317	CPSF4-201	705	-	ENSOANP00000012315	234 (aa)	-	F6PXL2

Gene Model

Click here to download ENSOANG00000007729's gene model file

Pathways

Pathway ID	Pathway Name	Source
oaa03015	mRNA surveillance pathway	KEGG
oaa05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOANG00000007729's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOANG00000007729	CPSF4	93	55.310	ENSOANG00000009568	-	83	55.310

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOANG00000007729	CPSF4	100	96.170	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSOANG00000007729	CPSF4	77	74.586	ENSAPOG00000004921	cpsf4	100	74.586	Acanthochromis_polyacanthus
ENSOANG00000007729	CPSF4	100	95.319	ENSAMEG00000006252	CPSF4	87	95.319	Ailuropoda_melanoleuca
ENSOANG00000007729	CPSF4	100	78.205	ENSACIG00000009248	cpsf4	86	78.205	Amphilophus_citrinellus
ENSOANG00000007729	CPSF4	100	82.773	ENSAOCG00000019616	cpsf4	87	82.773	Amphiprion_ocellaris
ENSOANG00000007729	CPSF4	100	82.773	ENSAPEG00000011679	cpsf4	87	82.773	Amphiprion_percula
ENSOANG00000007729	CPSF4	100	81.743	ENSATEG00000007010	cpsf4	87	81.743	Anabas_testudineus
ENSOANG00000007729	CPSF4	100	93.191	ENSACAG00000012941	CPSF4	78	93.191	Anolis_carolinensis
ENSOANG00000007729	CPSF4	100	96.170	ENSANAG00000021360	CPSF4	87	96.170	Aotus_nancymaae
ENSOANG00000007729	CPSF4	100	82.979	ENSACLG00000010374	cpsf4	87	82.979	Astatotilapia_calliptera
ENSOANG00000007729	CPSF4	100	83.122	ENSAMXG00000031647	cpsf4	87	83.966	Astyanax_mexicanus
ENSOANG00000007729	CPSF4	100	82.906	ENSBTAG00000002090	CPSF4	86	85.470	Bos_taurus
ENSOANG00000007729	CPSF4	100	96.170	ENSCJAG00000015826	CPSF4	87	96.170	Callithrix_jacchus
ENSOANG00000007729	CPSF4	100	95.319	ENSCAFG00000015036	CPSF4	87	95.319	Canis_familiaris
ENSOANG00000007729	CPSF4	93	95.413	ENSCAFG00020014462	CPSF4	83	95.413	Canis_lupus_dingo
ENSOANG00000007729	CPSF4	100	95.319	ENSCHIG00000014313	CPSF4	87	95.319	Capra_hircus
ENSOANG00000007729	CPSF4	100	86.325	ENSTSYG00000005712	-	86	86.325	Carlito_syrichta
ENSOANG00000007729	CPSF4	100	79.149	ENSTSYG00000014604	-	86	79.149	Carlito_syrichta
ENSOANG00000007729	CPSF4	100	80.426	ENSTSYG00000008195	-	93	80.426	Carlito_syrichta
ENSOANG00000007729	CPSF4	93	95.413	ENSCAPG00000013881	CPSF4	87	95.413	Cavia_aperea
ENSOANG00000007729	CPSF4	100	85.897	ENSCPOG00000001783	CPSF4	86	85.897	Cavia_porcellus
ENSOANG00000007729	CPSF4	100	96.170	ENSCCAG00000028291	CPSF4	87	96.170	Cebus_capucinus
ENSOANG00000007729	CPSF4	100	96.170	ENSCATG00000038440	CPSF4	87	96.170	Cercocebus_atys
ENSOANG00000007729	CPSF4	100	95.319	ENSCLAG00000007050	CPSF4	87	95.319	Chinchilla_lanigera
ENSOANG00000007729	CPSF4	100	96.170	ENSCSAG00000017795	CPSF4	87	96.170	Chlorocebus_sabaeus
ENSOANG00000007729	CPSF4	92	96.296	ENSCPBG00000020869	CPSF4	100	96.296	Chrysemys_picta_bellii
ENSOANG00000007729	CPSF4	56	84.091	ENSCPBG00000010269	-	80	84.091	Chrysemys_picta_bellii
ENSOANG00000007729	CPSF4	96	53.982	ENSCING00000021080	-	84	54.626	Ciona_intestinalis
ENSOANG00000007729	CPSF4	96	50.607	ENSCSAVG00000011469	-	85	50.607	Ciona_savignyi
ENSOANG00000007729	CPSF4	100	96.170	ENSCANG00000019384	CPSF4	87	96.170	Colobus_angolensis_palliatus
ENSOANG00000007729	CPSF4	100	85.897	ENSCGRG00001024184	Cpsf4	86	85.897	Cricetulus_griseus_chok1gshd
ENSOANG00000007729	CPSF4	100	95.319	ENSCGRG00000013892	Cpsf4	87	95.319	Cricetulus_griseus_crigri
ENSOANG00000007729	CPSF4	100	83.830	ENSCSEG00000019055	cpsf4	87	83.830	Cynoglossus_semilaevis
ENSOANG00000007729	CPSF4	100	82.553	ENSCVAG00000016528	cpsf4	87	82.553	Cyprinodon_variegatus
ENSOANG00000007729	CPSF4	100	82.700	ENSDARG00000020217	cpsf4	87	82.700	Danio_rerio
ENSOANG00000007729	CPSF4	100	95.745	ENSDNOG00000006344	CPSF4	87	95.745	Dasypus_novemcinctus
ENSOANG00000007729	CPSF4	92	94.931	ENSDORG00000000742	Cpsf4	100	94.931	Dipodomys_ordii
ENSOANG00000007729	CPSF4	100	55.039	FBgn0015621	Clp	87	56.202	Drosophila_melanogaster
ENSOANG00000007729	CPSF4	65	100.000	ENSETEG00000002608	CPSF4	57	100.000	Echinops_telfairi
ENSOANG00000007729	CPSF4	99	65.532	ENSEBUG00000012552	cpsf4	84	65.532	Eptatretus_burgeri
ENSOANG00000007729	CPSF4	100	85.897	ENSEASG00005002487	CPSF4	86	85.897	Equus_asinus_asinus
ENSOANG00000007729	CPSF4	100	95.319	ENSECAG00000007525	CPSF4	87	95.319	Equus_caballus
ENSOANG00000007729	CPSF4	72	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSOANG00000007729	CPSF4	100	80.417	ENSELUG00000011481	cpsf4	88	80.417	Esox_lucius
ENSOANG00000007729	CPSF4	100	95.319	ENSFCAG00000015070	CPSF4	87	95.319	Felis_catus
ENSOANG00000007729	CPSF4	100	85.043	ENSFALG00000013799	CPSF4	86	85.043	Ficedula_albicollis
ENSOANG00000007729	CPSF4	100	95.319	ENSFDAG00000014092	CPSF4	97	95.319	Fukomys_damarensis
ENSOANG00000007729	CPSF4	100	81.702	ENSFHEG00000010880	cpsf4	87	81.702	Fundulus_heteroclitus
ENSOANG00000007729	CPSF4	100	76.891	ENSGMOG00000002330	cpsf4	87	76.891	Gadus_morhua
ENSOANG00000007729	CPSF4	78	39.153	ENSGALG00000004441	-	92	39.153	Gallus_gallus
ENSOANG00000007729	CPSF4	100	85.470	ENSGALG00000004714	CPSF4	86	85.470	Gallus_gallus
ENSOANG00000007729	CPSF4	100	81.277	ENSGAFG00000010580	cpsf4	87	81.277	Gambusia_affinis
ENSOANG00000007729	CPSF4	100	77.637	ENSGACG00000007792	cpsf4	87	77.637	Gasterosteus_aculeatus
ENSOANG00000007729	CPSF4	100	95.745	ENSGAGG00000021835	CPSF4	87	95.745	Gopherus_agassizii
ENSOANG00000007729	CPSF4	56	84.733	ENSGAGG00000020579	-	73	84.733	Gopherus_agassizii
ENSOANG00000007729	CPSF4	100	96.170	ENSGGOG00000015131	CPSF4	87	96.170	Gorilla_gorilla
ENSOANG00000007729	CPSF4	100	82.979	ENSHBUG00000013699	cpsf4	87	82.979	Haplochromis_burtoni
ENSOANG00000007729	CPSF4	100	93.249	ENSHGLG00000017150	CPSF4	87	93.249	Heterocephalus_glaber_female
ENSOANG00000007729	CPSF4	61	63.636	ENSHGLG00100017302	-	71	64.151	Heterocephalus_glaber_male
ENSOANG00000007729	CPSF4	99	91.949	ENSHGLG00100009215	-	100	91.949	Heterocephalus_glaber_male
ENSOANG00000007729	CPSF4	100	79.149	ENSHCOG00000004397	cpsf4	87	79.149	Hippocampus_comes
ENSOANG00000007729	CPSF4	100	83.122	ENSIPUG00000017147	cpsf4	87	83.122	Ictalurus_punctatus
ENSOANG00000007729	CPSF4	100	95.319	ENSSTOG00000001688	CPSF4	87	95.319	Ictidomys_tridecemlineatus
ENSOANG00000007729	CPSF4	100	95.319	ENSJJAG00000019426	Cpsf4	87	95.319	Jaculus_jaculus
ENSOANG00000007729	CPSF4	100	81.277	ENSKMAG00000015642	cpsf4	87	81.277	Kryptolebias_marmoratus
ENSOANG00000007729	CPSF4	100	86.864	ENSLACG00000010938	CPSF4	87	86.864	Latimeria_chalumnae
ENSOANG00000007729	CPSF4	100	59.149	ENSLACG00000018470	-	86	59.149	Latimeria_chalumnae
ENSOANG00000007729	CPSF4	100	88.511	ENSLOCG00000004814	cpsf4	87	88.511	Lepisosteus_oculatus
ENSOANG00000007729	CPSF4	100	94.894	ENSLAFG00000000159	CPSF4	87	94.894	Loxodonta_africana
ENSOANG00000007729	CPSF4	100	96.170	ENSMFAG00000001462	CPSF4	100	86.047	Macaca_fascicularis
ENSOANG00000007729	CPSF4	100	96.170	ENSMMUG00000019191	CPSF4	87	96.170	Macaca_mulatta
ENSOANG00000007729	CPSF4	100	96.170	ENSMNEG00000032306	CPSF4	87	96.170	Macaca_nemestrina
ENSOANG00000007729	CPSF4	100	96.170	ENSMLEG00000034721	CPSF4	87	96.170	Mandrillus_leucophaeus
ENSOANG00000007729	CPSF4	100	83.264	ENSMAMG00000006244	cpsf4	87	83.264	Mastacembelus_armatus
ENSOANG00000007729	CPSF4	100	82.979	ENSMZEG00005007515	cpsf4	87	82.979	Maylandia_zebra
ENSOANG00000007729	CPSF4	100	85.897	ENSMGAG00000004235	CPSF4	100	85.897	Meleagris_gallopavo
ENSOANG00000007729	CPSF4	100	95.319	ENSMAUG00000021253	Cpsf4	87	95.319	Mesocricetus_auratus
ENSOANG00000007729	CPSF4	100	95.745	ENSMICG00000017429	CPSF4	87	95.745	Microcebus_murinus
ENSOANG00000007729	CPSF4	100	95.319	ENSMOCG00000014901	Cpsf4	87	95.319	Microtus_ochrogaster
ENSOANG00000007729	CPSF4	100	83.051	ENSMMOG00000001813	cpsf4	87	83.051	Mola_mola
ENSOANG00000007729	CPSF4	100	97.872	ENSMODG00000001367	CPSF4	87	97.872	Monodelphis_domestica
ENSOANG00000007729	CPSF4	100	83.051	ENSMALG00000012611	cpsf4	87	83.051	Monopterus_albus
ENSOANG00000007729	CPSF4	100	95.319	MGP_CAROLIEiJ_G0028012	Cpsf4	87	95.319	Mus_caroli
ENSOANG00000007729	CPSF4	100	95.319	ENSMUSG00000029625	Cpsf4	87	95.319	Mus_musculus
ENSOANG00000007729	CPSF4	100	95.319	MGP_PahariEiJ_G0024581	Cpsf4	87	95.319	Mus_pahari
ENSOANG00000007729	CPSF4	100	95.745	MGP_SPRETEiJ_G0029013	Cpsf4	87	95.745	Mus_spretus
ENSOANG00000007729	CPSF4	100	95.319	ENSMPUG00000016508	CPSF4	87	95.319	Mustela_putorius_furo
ENSOANG00000007729	CPSF4	100	85.897	ENSMLUG00000010980	CPSF4	100	85.897	Myotis_lucifugus
ENSOANG00000007729	CPSF4	100	95.319	ENSNGAG00000001567	Cpsf4	87	95.319	Nannospalax_galili
ENSOANG00000007729	CPSF4	100	82.979	ENSNBRG00000003943	cpsf4	94	82.979	Neolamprologus_brichardi
ENSOANG00000007729	CPSF4	100	92.766	ENSNLEG00000011074	CPSF4	87	92.766	Nomascus_leucogenys
ENSOANG00000007729	CPSF4	100	97.872	ENSMEUG00000006955	CPSF4	87	97.872	Notamacropus_eugenii
ENSOANG00000007729	CPSF4	100	95.319	ENSOPRG00000013663	CPSF4	87	95.319	Ochotona_princeps
ENSOANG00000007729	CPSF4	100	71.008	ENSODEG00000009779	-	87	71.008	Octodon_degus
ENSOANG00000007729	CPSF4	93	77.523	ENSODEG00000018283	-	78	77.523	Octodon_degus
ENSOANG00000007729	CPSF4	100	95.319	ENSODEG00000011181	-	87	95.319	Octodon_degus
ENSOANG00000007729	CPSF4	100	82.979	ENSONIG00000008495	cpsf4	87	82.979	Oreochromis_niloticus
ENSOANG00000007729	CPSF4	100	94.894	ENSOCUG00000002437	CPSF4	61	94.894	Oryctolagus_cuniculus
ENSOANG00000007729	CPSF4	100	82.051	ENSORLG00000022798	cpsf4	87	82.051	Oryzias_latipes
ENSOANG00000007729	CPSF4	100	82.051	ENSORLG00020008548	cpsf4	87	82.051	Oryzias_latipes_hni
ENSOANG00000007729	CPSF4	100	82.051	ENSORLG00015019575	cpsf4	87	82.051	Oryzias_latipes_hsok
ENSOANG00000007729	CPSF4	100	80.252	ENSOMEG00000005176	cpsf4	87	80.252	Oryzias_melastigma
ENSOANG00000007729	CPSF4	100	95.745	ENSOGAG00000010884	CPSF4	87	95.745	Otolemur_garnettii
ENSOANG00000007729	CPSF4	100	84.100	ENSOARG00000018668	CPSF4	88	84.100	Ovis_aries
ENSOANG00000007729	CPSF4	100	96.596	ENSPPAG00000043355	CPSF4	87	96.596	Pan_paniscus
ENSOANG00000007729	CPSF4	100	95.319	ENSPPRG00000003134	CPSF4	87	95.319	Panthera_pardus
ENSOANG00000007729	CPSF4	100	95.319	ENSPTIG00000005604	CPSF4	87	95.319	Panthera_tigris_altaica
ENSOANG00000007729	CPSF4	100	96.596	ENSPTRG00000019453	CPSF4	87	96.596	Pan_troglodytes
ENSOANG00000007729	CPSF4	100	96.170	ENSPANG00000023123	CPSF4	87	96.170	Papio_anubis
ENSOANG00000007729	CPSF4	100	83.333	ENSPKIG00000014278	cpsf4	88	83.333	Paramormyrops_kingsleyae
ENSOANG00000007729	CPSF4	92	95.833	ENSPSIG00000011229	CPSF4	100	95.833	Pelodiscus_sinensis
ENSOANG00000007729	CPSF4	93	57.604	ENSPSIG00000018198	-	100	57.604	Pelodiscus_sinensis
ENSOANG00000007729	CPSF4	93	76.498	ENSPMGG00000017735	cpsf4	81	76.498	Periophthalmus_magnuspinnatus
ENSOANG00000007729	CPSF4	100	95.319	ENSPEMG00000004508	Cpsf4	87	95.319	Peromyscus_maniculatus_bairdii
ENSOANG00000007729	CPSF4	100	97.872	ENSPCIG00000024776	CPSF4	87	97.872	Phascolarctos_cinereus
ENSOANG00000007729	CPSF4	100	81.277	ENSPFOG00000014912	cpsf4	87	81.277	Poecilia_formosa
ENSOANG00000007729	CPSF4	100	73.504	ENSPLAG00000009599	cpsf4	86	73.504	Poecilia_latipinna
ENSOANG00000007729	CPSF4	100	81.277	ENSPMEG00000009790	cpsf4	87	81.277	Poecilia_mexicana
ENSOANG00000007729	CPSF4	100	80.426	ENSPREG00000018166	cpsf4	87	80.426	Poecilia_reticulata
ENSOANG00000007729	CPSF4	99	96.581	ENSPPYG00000017378	CPSF4	100	96.581	Pongo_abelii
ENSOANG00000007729	CPSF4	100	94.468	ENSPCAG00000001892	CPSF4	87	94.468	Procavia_capensis
ENSOANG00000007729	CPSF4	100	95.319	ENSPCOG00000012771	CPSF4	87	95.319	Propithecus_coquereli
ENSOANG00000007729	CPSF4	92	95.392	ENSPVAG00000007531	CPSF4	81	95.392	Pteropus_vampyrus
ENSOANG00000007729	CPSF4	100	82.979	ENSPNYG00000018559	cpsf4	87	82.979	Pundamilia_nyererei
ENSOANG00000007729	CPSF4	100	83.898	ENSPNAG00000003736	cpsf4	87	83.898	Pygocentrus_nattereri
ENSOANG00000007729	CPSF4	100	82.906	ENSRNOG00000000985	Cpsf4	86	85.470	Rattus_norvegicus
ENSOANG00000007729	CPSF4	99	96.581	ENSRBIG00000033886	CPSF4	100	96.581	Rhinopithecus_bieti
ENSOANG00000007729	CPSF4	100	86.752	ENSRROG00000040431	CPSF4	86	86.752	Rhinopithecus_roxellana
ENSOANG00000007729	CPSF4	100	96.170	ENSSBOG00000020493	CPSF4	100	86.047	Saimiri_boliviensis_boliviensis
ENSOANG00000007729	CPSF4	100	97.872	ENSSHAG00000011533	CPSF4	87	97.872	Sarcophilus_harrisii
ENSOANG00000007729	CPSF4	100	83.884	ENSSFOG00015007883	cpsf4	88	83.884	Scleropages_formosus
ENSOANG00000007729	CPSF4	100	77.778	ENSSMAG00000006374	cpsf4	86	77.778	Scophthalmus_maximus
ENSOANG00000007729	CPSF4	100	81.092	ENSSDUG00000018887	cpsf4	87	81.092	Seriola_dumerili
ENSOANG00000007729	CPSF4	100	81.092	ENSSLDG00000019078	cpsf4	87	81.092	Seriola_lalandi_dorsalis
ENSOANG00000007729	CPSF4	99	96.154	ENSSARG00000012416	CPSF4	100	96.154	Sorex_araneus
ENSOANG00000007729	CPSF4	100	94.894	ENSSPUG00000003549	CPSF4	87	94.894	Sphenodon_punctatus
ENSOANG00000007729	CPSF4	95	59.193	ENSSPUG00000014803	-	82	59.193	Sphenodon_punctatus
ENSOANG00000007729	CPSF4	100	78.632	ENSSPAG00000006174	cpsf4	86	78.632	Stegastes_partitus
ENSOANG00000007729	CPSF4	100	86.325	ENSSSCG00000026896	CPSF4	86	86.325	Sus_scrofa
ENSOANG00000007729	CPSF4	100	83.898	ENSTGUG00000007552	CPSF4	86	83.898	Taeniopygia_guttata
ENSOANG00000007729	CPSF4	100	80.000	ENSTRUG00000024220	cpsf4	87	80.000	Takifugu_rubripes
ENSOANG00000007729	CPSF4	100	79.237	ENSTNIG00000006265	cpsf4	87	80.000	Tetraodon_nigroviridis
ENSOANG00000007729	CPSF4	99	87.179	ENSTBEG00000011406	CPSF4	100	87.179	Tupaia_belangeri
ENSOANG00000007729	CPSF4	100	74.043	ENSTTRG00000003007	CPSF4	87	74.043	Tursiops_truncatus
ENSOANG00000007729	CPSF4	91	81.132	ENSUAMG00000008051	CPSF4	72	83.962	Ursus_americanus
ENSOANG00000007729	CPSF4	100	82.906	ENSUMAG00000009474	CPSF4	86	85.470	Ursus_maritimus
ENSOANG00000007729	CPSF4	100	81.624	ENSVVUG00000008824	CPSF4	86	85.897	Vulpes_vulpes
ENSOANG00000007729	CPSF4	100	87.347	ENSXETG00000009892	cpsf4	88	87.347	Xenopus_tropicalis
ENSOANG00000007729	CPSF4	99	62.605	ENSXETG00000004641	cpsf4l	86	62.605	Xenopus_tropicalis
ENSOANG00000007729	CPSF4	100	80.851	ENSXCOG00000016040	cpsf4	87	80.851	Xiphophorus_couchianus
ENSOANG00000007729	CPSF4	100	81.277	ENSXMAG00000024670	cpsf4	87	81.277	Xiphophorus_maculatus