EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOARG00000000600 (Gene tree)
Gene ID
101105285
Gene Symbol
LSM3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Ovis_aries
Status
putative
Strand
Minus strand
Length
8204 bases
Position
chr19:57870452-57878655
Accession
101105285
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOARP00000000616LSMPF01423.223.8e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOART00000000646LSM3-201312XM_004018551ENSOARP00000000616103 (aa)XP_004018600W5NR26
Gene Model
Click here to download ENSOARG00000000600's gene model file
Pathways
Pathway IDPathway NameSource
oas03018RNA degradationKEGG
oas03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000000600's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOARG00000000600LSM38332.222ENSOARG00000016742-6931.707
ENSOARG00000000600LSM37731.707ENSOARG00000010203-6931.707
ENSOARG00000000600LSM37334.667ENSOARG00000006944LSM58234.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOARG00000000600LSM310099.029ENSG00000170860LSM310099.029Homo_sapiens
ENSOARG00000000600LSM310094.175ENSAPOG00000018947lsm310094.175Acanthochromis_polyacanthus
ENSOARG00000000600LSM310099.029ENSAMEG00000009405LSM310099.029Ailuropoda_melanoleuca
ENSOARG00000000600LSM310093.204ENSACIG00000004574lsm37193.204Amphilophus_citrinellus
ENSOARG00000000600LSM310094.175ENSAOCG00000007658lsm310094.175Amphiprion_ocellaris
ENSOARG00000000600LSM310094.175ENSAPEG00000018621lsm310094.175Amphiprion_percula
ENSOARG00000000600LSM310094.175ENSATEG00000005153lsm310094.175Anabas_testudineus
ENSOARG00000000600LSM392100.000ENSAPLG00000014499LSM3100100.000Anas_platyrhynchos
ENSOARG00000000600LSM310098.058ENSACAG00000013503LSM310098.058Anolis_carolinensis
ENSOARG00000000600LSM310095.146ENSANAG00000002903-10095.146Aotus_nancymaae
ENSOARG00000000600LSM310099.029ENSANAG00000034627LSM310099.029Aotus_nancymaae
ENSOARG00000000600LSM39495.876ENSACLG00000001726-9495.876Astatotilapia_calliptera
ENSOARG00000000600LSM310096.117ENSAMXG00000041214lsm310096.117Astyanax_mexicanus
ENSOARG00000000600LSM393100.000ENSBTAG00000007363LSM3100100.000Bos_taurus
ENSOARG00000000600LSM38975.000WBGene00003077lsm-39075.000Caenorhabditis_elegans
ENSOARG00000000600LSM310097.087ENSCAFG00000001760LSM310097.087Canis_familiaris
ENSOARG00000000600LSM310096.117ENSCAFG00020026452-10096.117Canis_lupus_dingo
ENSOARG00000000600LSM310090.291ENSCAFG00020016680-10090.291Canis_lupus_dingo
ENSOARG00000000600LSM310097.087ENSCAFG00020021584-10097.087Canis_lupus_dingo
ENSOARG00000000600LSM310097.087ENSCAFG00020017266-10097.087Canis_lupus_dingo
ENSOARG00000000600LSM310087.963ENSCAFG00020020950-10087.963Canis_lupus_dingo
ENSOARG00000000600LSM310099.029ENSCHIG00000024650LSM310099.029Capra_hircus
ENSOARG00000000600LSM39979.412ENSTSYG00000028528-9979.412Carlito_syrichta
ENSOARG00000000600LSM310098.058ENSTSYG00000005204-10098.058Carlito_syrichta
ENSOARG00000000600LSM393100.000ENSCAPG00000015760LSM3100100.000Cavia_aperea
ENSOARG00000000600LSM310099.029ENSCPOG00000034071LSM310099.029Cavia_porcellus
ENSOARG00000000600LSM310099.029ENSCCAG00000019503-10099.029Cebus_capucinus
ENSOARG00000000600LSM310079.612ENSCCAG00000032763-10079.612Cebus_capucinus
ENSOARG00000000600LSM310099.029ENSCCAG00000036499-10099.029Cebus_capucinus
ENSOARG00000000600LSM310099.029ENSCATG00000039421LSM310099.029Cercocebus_atys
ENSOARG00000000600LSM39978.431ENSCATG00000031630-9978.431Cercocebus_atys
ENSOARG00000000600LSM310099.029ENSCLAG00000015997LSM310099.029Chinchilla_lanigera
ENSOARG00000000600LSM310094.175ENSCSAG00000019525-10094.175Chlorocebus_sabaeus
ENSOARG00000000600LSM310098.058ENSCPBG00000014531LSM310098.058Chrysemys_picta_bellii
ENSOARG00000000600LSM310082.692ENSCSAVG00000009542-10082.692Ciona_savignyi
ENSOARG00000000600LSM310094.175ENSCANG00000018782-10094.175Colobus_angolensis_palliatus
ENSOARG00000000600LSM310096.117ENSCANG00000038037-10096.117Colobus_angolensis_palliatus
ENSOARG00000000600LSM310099.029ENSCANG00000033944-10099.029Colobus_angolensis_palliatus
ENSOARG00000000600LSM39883.168ENSCGRG00001011396-10083.168Cricetulus_griseus_chok1gshd
ENSOARG00000000600LSM39277.083ENSCGRG00001008639-9777.083Cricetulus_griseus_chok1gshd
ENSOARG00000000600LSM310099.029ENSCGRG00001017598Lsm310099.029Cricetulus_griseus_chok1gshd
ENSOARG00000000600LSM310099.029ENSCGRG00000016159Lsm310099.029Cricetulus_griseus_crigri
ENSOARG00000000600LSM39284.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSOARG00000000600LSM310094.175ENSCSEG00000015071lsm37794.175Cynoglossus_semilaevis
ENSOARG00000000600LSM310093.204ENSCVAG00000006933lsm310093.204Cyprinodon_variegatus
ENSOARG00000000600LSM310096.117ENSDARG00000089663lsm310096.117Danio_rerio
ENSOARG00000000600LSM310099.029ENSDNOG00000030808LSM310099.029Dasypus_novemcinctus
ENSOARG00000000600LSM310099.029ENSDORG00000006894-10099.029Dipodomys_ordii
ENSOARG00000000600LSM310079.612ENSDORG00000024490-10079.612Dipodomys_ordii
ENSOARG00000000600LSM310076.699FBgn0051184LSm310076.699Drosophila_melanogaster
ENSOARG00000000600LSM310099.029ENSETEG00000016207LSM310099.029Echinops_telfairi
ENSOARG00000000600LSM310088.350ENSEBUG00000004943lsm310088.350Eptatretus_burgeri
ENSOARG00000000600LSM310099.029ENSEASG00005015443LSM310099.029Equus_asinus_asinus
ENSOARG00000000600LSM310099.029ENSECAG00000007803LSM310099.029Equus_caballus
ENSOARG00000000600LSM310095.146ENSELUG00000018922lsm310095.146Esox_lucius
ENSOARG00000000600LSM310074.757ENSFCAG00000044344-10074.757Felis_catus
ENSOARG00000000600LSM310099.029ENSFCAG00000038453LSM310099.029Felis_catus
ENSOARG00000000600LSM310098.058ENSFALG00000012644LSM310098.058Ficedula_albicollis
ENSOARG00000000600LSM310099.029ENSFDAG00000011470LSM310099.029Fukomys_damarensis
ENSOARG00000000600LSM310094.175ENSFHEG00000000876lsm310094.175Fundulus_heteroclitus
ENSOARG00000000600LSM39296.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSOARG00000000600LSM310094.175ENSGAFG00000013965lsm310094.175Gambusia_affinis
ENSOARG00000000600LSM310094.175ENSGACG00000003488lsm310094.175Gasterosteus_aculeatus
ENSOARG00000000600LSM310098.058ENSGAGG00000025707LSM310098.058Gopherus_agassizii
ENSOARG00000000600LSM310099.029ENSGGOG00000010006LSM310099.029Gorilla_gorilla
ENSOARG00000000600LSM310094.175ENSHBUG00000022399lsm310094.175Haplochromis_burtoni
ENSOARG00000000600LSM310079.612ENSHGLG00000015564-10079.612Heterocephalus_glaber_female
ENSOARG00000000600LSM310099.029ENSHGLG00000000651LSM310099.029Heterocephalus_glaber_female
ENSOARG00000000600LSM310099.029ENSHGLG00100011343LSM310099.029Heterocephalus_glaber_male
ENSOARG00000000600LSM310079.612ENSHGLG00100010658-10079.612Heterocephalus_glaber_male
ENSOARG00000000600LSM310093.204ENSHCOG00000013481lsm310093.204Hippocampus_comes
ENSOARG00000000600LSM310096.117ENSIPUG00000009207lsm310096.117Ictalurus_punctatus
ENSOARG00000000600LSM310099.029ENSSTOG00000006842LSM310099.029Ictidomys_tridecemlineatus
ENSOARG00000000600LSM310090.291ENSJJAG00000012797-10090.291Jaculus_jaculus
ENSOARG00000000600LSM39974.510ENSJJAG00000018311-10074.510Jaculus_jaculus
ENSOARG00000000600LSM310099.029ENSJJAG00000017351Lsm310099.029Jaculus_jaculus
ENSOARG00000000600LSM310093.204ENSKMAG00000015182lsm310093.204Kryptolebias_marmoratus
ENSOARG00000000600LSM39494.845ENSLBEG00000021292lsm39994.845Labrus_bergylta
ENSOARG00000000600LSM310096.117ENSLOCG00000013560lsm310096.117Lepisosteus_oculatus
ENSOARG00000000600LSM3100100.000ENSLAFG00000023308LSM3100100.000Loxodonta_africana
ENSOARG00000000600LSM310099.029ENSMFAG00000003185LSM310099.029Macaca_fascicularis
ENSOARG00000000600LSM310076.699ENSMMUG00000043596-10076.699Macaca_mulatta
ENSOARG00000000600LSM310099.029ENSMMUG00000023126LSM310099.029Macaca_mulatta
ENSOARG00000000600LSM39280.000ENSMMUG00000002294-9180.000Macaca_mulatta
ENSOARG00000000600LSM310099.029ENSMNEG00000043632LSM310099.029Macaca_nemestrina
ENSOARG00000000600LSM39980.392ENSMNEG00000037686-9980.392Macaca_nemestrina
ENSOARG00000000600LSM310099.029ENSMLEG00000036162LSM310099.029Mandrillus_leucophaeus
ENSOARG00000000600LSM310094.175ENSMAMG00000012807lsm310094.175Mastacembelus_armatus
ENSOARG00000000600LSM310094.175ENSMZEG00005016682lsm37394.175Maylandia_zebra
ENSOARG00000000600LSM393100.000ENSMGAG00000007776LSM3100100.000Meleagris_gallopavo
ENSOARG00000000600LSM310084.466ENSMICG00000027821-10084.466Microcebus_murinus
ENSOARG00000000600LSM310098.058ENSMICG00000032361-10098.058Microcebus_murinus
ENSOARG00000000600LSM310099.029ENSMOCG00000014269Lsm310099.029Microtus_ochrogaster
ENSOARG00000000600LSM310093.204ENSMMOG00000020715lsm310093.204Mola_mola
ENSOARG00000000600LSM310098.058ENSMODG00000007275LSM310098.058Monodelphis_domestica
ENSOARG00000000600LSM310094.175ENSMALG00000006485lsm310094.175Monopterus_albus
ENSOARG00000000600LSM310099.029ENSMUSG00000034192Lsm310099.029Mus_musculus
ENSOARG00000000600LSM310099.029MGP_PahariEiJ_G0022402Lsm310099.029Mus_pahari
ENSOARG00000000600LSM310099.029MGP_SPRETEiJ_G0029681Lsm310099.029Mus_spretus
ENSOARG00000000600LSM38391.860ENSMPUG00000017256-10091.860Mustela_putorius_furo
ENSOARG00000000600LSM39788.000ENSMPUG00000019120-9788.000Mustela_putorius_furo
ENSOARG00000000600LSM310099.029ENSMLUG00000010677LSM310099.029Myotis_lucifugus
ENSOARG00000000600LSM310091.262ENSMLUG00000024700-10091.262Myotis_lucifugus
ENSOARG00000000600LSM310099.029ENSNGAG00000022450Lsm310099.029Nannospalax_galili
ENSOARG00000000600LSM39979.412ENSNGAG00000010207-9979.412Nannospalax_galili
ENSOARG00000000600LSM310073.786ENSNGAG00000013716-10073.786Nannospalax_galili
ENSOARG00000000600LSM310094.175ENSNBRG00000014318lsm310094.175Neolamprologus_brichardi
ENSOARG00000000600LSM310090.291ENSNLEG00000030229-10090.291Nomascus_leucogenys
ENSOARG00000000600LSM310099.029ENSNLEG00000005079LSM310099.029Nomascus_leucogenys
ENSOARG00000000600LSM310098.058ENSODEG00000019740-10098.058Octodon_degus
ENSOARG00000000600LSM310097.087ENSODEG00000019158-10097.087Octodon_degus
ENSOARG00000000600LSM310099.029ENSODEG00000001726LSM310099.029Octodon_degus
ENSOARG00000000600LSM310091.262ENSODEG00000019403-10091.262Octodon_degus
ENSOARG00000000600LSM310094.175ENSONIG00000021369-10094.175Oreochromis_niloticus
ENSOARG00000000600LSM310094.175ENSONIG00000000370lsm310094.175Oreochromis_niloticus
ENSOARG00000000600LSM310098.058ENSOANG00000012273LSM310098.058Ornithorhynchus_anatinus
ENSOARG00000000600LSM310094.175ENSOCUG00000011088-10094.175Oryctolagus_cuniculus
ENSOARG00000000600LSM310099.029ENSOCUG00000027653-10099.029Oryctolagus_cuniculus
ENSOARG00000000600LSM310092.233ENSORLG00000025900lsm310092.233Oryzias_latipes
ENSOARG00000000600LSM310092.233ENSORLG00020007125lsm310092.233Oryzias_latipes_hni
ENSOARG00000000600LSM310092.233ENSORLG00015002944lsm310092.233Oryzias_latipes_hsok
ENSOARG00000000600LSM310092.233ENSOMEG00000001915lsm310092.233Oryzias_melastigma
ENSOARG00000000600LSM39398.958ENSOGAG00000028858-9898.958Otolemur_garnettii
ENSOARG00000000600LSM310099.029ENSOGAG00000007659-10099.029Otolemur_garnettii
ENSOARG00000000600LSM310089.320ENSOGAG00000033051-10089.320Otolemur_garnettii
ENSOARG00000000600LSM310099.029ENSPPAG00000034074LSM310099.029Pan_paniscus
ENSOARG00000000600LSM39991.176ENSPPRG00000010610-8991.176Panthera_pardus
ENSOARG00000000600LSM310098.058ENSPPRG00000020953-10098.058Panthera_pardus
ENSOARG00000000600LSM310099.029ENSPPRG00000012912-10099.029Panthera_pardus
ENSOARG00000000600LSM310099.029ENSPTIG00000003463-10099.029Panthera_tigris_altaica
ENSOARG00000000600LSM310099.029ENSPTIG00000013072-10099.029Panthera_tigris_altaica
ENSOARG00000000600LSM310099.029ENSPTRG00000014650LSM310099.029Pan_troglodytes
ENSOARG00000000600LSM310077.670ENSPANG00000032192-10077.670Papio_anubis
ENSOARG00000000600LSM310099.029ENSPANG00000009378LSM310099.029Papio_anubis
ENSOARG00000000600LSM310097.087ENSPKIG00000008037lsm39197.087Paramormyrops_kingsleyae
ENSOARG00000000600LSM310098.058ENSPSIG00000015720LSM310098.058Pelodiscus_sinensis
ENSOARG00000000600LSM39493.814ENSPMGG00000012103lsm39893.814Periophthalmus_magnuspinnatus
ENSOARG00000000600LSM310099.029ENSPEMG00000015797Lsm310099.029Peromyscus_maniculatus_bairdii
ENSOARG00000000600LSM310082.524ENSPEMG00000020213-10082.524Peromyscus_maniculatus_bairdii
ENSOARG00000000600LSM310094.175ENSPFOG00000008372lsm310094.175Poecilia_formosa
ENSOARG00000000600LSM310094.175ENSPLAG00000000563lsm310094.175Poecilia_latipinna
ENSOARG00000000600LSM310094.175ENSPMEG00000022052lsm310094.175Poecilia_mexicana
ENSOARG00000000600LSM310094.175ENSPREG00000022485lsm310094.175Poecilia_reticulata
ENSOARG00000000600LSM310099.029ENSPPYG00000013402LSM310099.029Pongo_abelii
ENSOARG00000000600LSM310099.029ENSPCAG00000017077LSM310099.029Procavia_capensis
ENSOARG00000000600LSM310098.058ENSPCOG00000016217-10098.058Propithecus_coquereli
ENSOARG00000000600LSM39476.289ENSPCOG00000014435-9876.289Propithecus_coquereli
ENSOARG00000000600LSM310099.029ENSPVAG00000016795LSM310099.029Pteropus_vampyrus
ENSOARG00000000600LSM310094.175ENSPNYG00000009552lsm37394.175Pundamilia_nyererei
ENSOARG00000000600LSM310096.117ENSPNAG00000023467lsm310096.117Pygocentrus_nattereri
ENSOARG00000000600LSM310099.029ENSRNOG00000008733Lsm310099.029Rattus_norvegicus
ENSOARG00000000600LSM310099.029ENSRBIG00000034399LSM310099.029Rhinopithecus_bieti
ENSOARG00000000600LSM310082.524ENSRBIG00000043783-10082.524Rhinopithecus_bieti
ENSOARG00000000600LSM310083.495ENSRROG00000039868-10083.495Rhinopithecus_roxellana
ENSOARG00000000600LSM310099.029ENSRROG00000033276-10099.029Rhinopithecus_roxellana
ENSOARG00000000600LSM310080.583ENSRROG00000044056-10080.583Rhinopithecus_roxellana
ENSOARG00000000600LSM310088.350ENSRROG00000044047-10088.350Rhinopithecus_roxellana
ENSOARG00000000600LSM310099.029ENSSBOG00000024310LSM310099.029Saimiri_boliviensis_boliviensis
ENSOARG00000000600LSM310096.117ENSSFOG00015007071lsm310096.117Scleropages_formosus
ENSOARG00000000600LSM310094.175ENSSMAG00000001818lsm310094.175Scophthalmus_maximus
ENSOARG00000000600LSM310094.175ENSSDUG00000006040lsm310094.175Seriola_dumerili
ENSOARG00000000600LSM310094.175ENSSLDG00000006399lsm310094.175Seriola_lalandi_dorsalis
ENSOARG00000000600LSM356100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSOARG00000000600LSM392100.000ENSSPUG00000017047-99100.000Sphenodon_punctatus
ENSOARG00000000600LSM310088.350ENSSPUG00000005394LSM310088.350Sphenodon_punctatus
ENSOARG00000000600LSM310083.495ENSSPAG00000000934lsm310083.495Stegastes_partitus
ENSOARG00000000600LSM310099.029ENSSSCG00000011601LSM310099.029Sus_scrofa
ENSOARG00000000600LSM39576.531ENSSSCG00000023718-9976.531Sus_scrofa
ENSOARG00000000600LSM310098.058ENSTGUG00000008327LSM310098.058Taeniopygia_guttata
ENSOARG00000000600LSM310093.204ENSTRUG00000023175lsm310093.204Takifugu_rubripes
ENSOARG00000000600LSM310093.204ENSTNIG00000005589lsm310093.204Tetraodon_nigroviridis
ENSOARG00000000600LSM310089.320ENSTBEG00000001050-9989.320Tupaia_belangeri
ENSOARG00000000600LSM310099.029ENSTTRG00000011197LSM310099.029Tursiops_truncatus
ENSOARG00000000600LSM310099.029ENSUAMG00000017250-10099.029Ursus_americanus
ENSOARG00000000600LSM310099.029ENSUMAG00000015905LSM310099.029Ursus_maritimus
ENSOARG00000000600LSM392100.000ENSVPAG00000010709LSM3100100.000Vicugna_pacos
ENSOARG00000000600LSM310090.291ENSVVUG00000024228-10090.291Vulpes_vulpes
ENSOARG00000000600LSM310094.175ENSVVUG00000006481-10094.175Vulpes_vulpes
ENSOARG00000000600LSM310095.146ENSVVUG00000007332-9195.146Vulpes_vulpes
ENSOARG00000000600LSM310093.204ENSVVUG00000005684-10093.204Vulpes_vulpes
ENSOARG00000000600LSM310094.175ENSVVUG00000029294-10094.175Vulpes_vulpes
ENSOARG00000000600LSM310097.087ENSXETG00000011534lsm310097.087Xenopus_tropicalis
ENSOARG00000000600LSM310094.175ENSXCOG00000017432LSM310094.175Xiphophorus_couchianus
ENSOARG00000000600LSM310094.175ENSXMAG00000009151lsm310094.175Xiphophorus_maculatus

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