EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000002072 (Gene tree)
Gene ID: 101105238
Gene Symbol: APOBEC1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Minus strand
Length: 5611 bases
Position: chr3:206035174-206040784
Accession: 101105238
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000002175	APOBEC_N	PF08210.11	1.1e-28	1	1
ENSOARP00000002175	APOBEC_C	PF05240.14	3.8e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000002226	APOBEC1-201	817	XM_004007571	ENSOARP00000002175	239 (aa)	XP_012030851	W5NVH9

Gene Model

Click here to download ENSOARG00000002072's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000002072's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000002072	APOBEC1	51	31.818	ENSOARG00000001982	AICDA	65	31.818
ENSOARG00000002072	APOBEC1	52	38.614	ENSOARG00000016290	APOBEC3F	60	38.614

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000002072	APOBEC1	99	72.458	ENSG00000111701	APOBEC1	100	72.458	Homo_sapiens
ENSOARG00000002072	APOBEC1	97	74.459	ENSAMEG00000007098	APOBEC1	98	74.459	Ailuropoda_melanoleuca
ENSOARG00000002072	APOBEC1	71	40.698	ENSACAG00000028578	-	93	40.698	Anolis_carolinensis
ENSOARG00000002072	APOBEC1	99	75.424	ENSANAG00000027743	APOBEC1	95	75.424	Aotus_nancymaae
ENSOARG00000002072	APOBEC1	99	90.254	ENSBTAG00000014683	APOBEC1	100	90.254	Bos_taurus
ENSOARG00000002072	APOBEC1	92	74.208	ENSCJAG00000005398	APOBEC1	100	74.208	Callithrix_jacchus
ENSOARG00000002072	APOBEC1	99	73.305	ENSCAFG00000013901	APOBEC1	100	73.305	Canis_familiaris
ENSOARG00000002072	APOBEC1	95	72.124	ENSCAFG00020003511	APOBEC1	95	72.124	Canis_lupus_dingo
ENSOARG00000002072	APOBEC1	98	98.291	ENSCHIG00000011898	APOBEC1	97	98.291	Capra_hircus
ENSOARG00000002072	APOBEC1	59	72.857	ENSTSYG00000029141	APOBEC1	99	72.857	Carlito_syrichta
ENSOARG00000002072	APOBEC1	90	64.186	ENSCAPG00000015882	-	100	64.186	Cavia_aperea
ENSOARG00000002072	APOBEC1	98	62.128	ENSCPOG00000033068	APOBEC1	99	62.128	Cavia_porcellus
ENSOARG00000002072	APOBEC1	99	75.424	ENSCCAG00000022258	APOBEC1	100	75.424	Cebus_capucinus
ENSOARG00000002072	APOBEC1	99	73.729	ENSCATG00000021613	APOBEC1	95	73.729	Cercocebus_atys
ENSOARG00000002072	APOBEC1	96	65.502	ENSCLAG00000014645	APOBEC1	99	65.502	Chinchilla_lanigera
ENSOARG00000002072	APOBEC1	79	75.789	ENSCSAG00000009817	APOBEC1	99	75.789	Chlorocebus_sabaeus
ENSOARG00000002072	APOBEC1	96	39.149	ENSCPBG00000017398	-	99	39.149	Chrysemys_picta_bellii
ENSOARG00000002072	APOBEC1	87	39.336	ENSCPBG00000014327	-	82	39.336	Chrysemys_picta_bellii
ENSOARG00000002072	APOBEC1	82	44.949	ENSCPBG00000014328	-	86	44.949	Chrysemys_picta_bellii
ENSOARG00000002072	APOBEC1	84	47.291	ENSCPBG00000014329	-	56	47.291	Chrysemys_picta_bellii
ENSOARG00000002072	APOBEC1	75	45.355	ENSCPBG00000014331	-	76	45.355	Chrysemys_picta_bellii
ENSOARG00000002072	APOBEC1	77	48.128	ENSCPBG00000014335	-	76	48.128	Chrysemys_picta_bellii
ENSOARG00000002072	APOBEC1	96	73.478	ENSCANG00000038359	APOBEC1	100	73.478	Colobus_angolensis_palliatus
ENSOARG00000002072	APOBEC1	96	65.502	ENSCGRG00001011130	Apobec1	100	65.502	Cricetulus_griseus_chok1gshd
ENSOARG00000002072	APOBEC1	96	65.502	ENSCGRG00000008644	Apobec1	100	65.502	Cricetulus_griseus_crigri
ENSOARG00000002072	APOBEC1	99	71.186	ENSDNOG00000010926	APOBEC1	100	71.186	Dasypus_novemcinctus
ENSOARG00000002072	APOBEC1	89	64.486	ENSDORG00000023717	Apobec1	100	64.486	Dipodomys_ordii
ENSOARG00000002072	APOBEC1	98	68.511	ENSETEG00000004867	APOBEC1	99	68.511	Echinops_telfairi
ENSOARG00000002072	APOBEC1	97	78.788	ENSEASG00005015951	APOBEC1	97	78.788	Equus_asinus_asinus
ENSOARG00000002072	APOBEC1	79	81.053	ENSECAG00000017163	APOBEC1	99	81.053	Equus_caballus
ENSOARG00000002072	APOBEC1	85	52.941	ENSEEUG00000007530	-	97	52.941	Erinaceus_europaeus
ENSOARG00000002072	APOBEC1	92	61.818	ENSEEUG00000009112	-	98	61.818	Erinaceus_europaeus
ENSOARG00000002072	APOBEC1	99	75.000	ENSFCAG00000009350	APOBEC1	100	75.000	Felis_catus
ENSOARG00000002072	APOBEC1	59	46.479	ENSFALG00000007257	-	70	46.479	Ficedula_albicollis
ENSOARG00000002072	APOBEC1	87	53.140	ENSFDAG00000018470	APOBEC1	99	53.140	Fukomys_damarensis
ENSOARG00000002072	APOBEC1	82	41.117	ENSGAGG00000021744	-	77	41.117	Gopherus_agassizii
ENSOARG00000002072	APOBEC1	91	37.838	ENSGAGG00000021745	-	78	37.838	Gopherus_agassizii
ENSOARG00000002072	APOBEC1	87	48.804	ENSGAGG00000011837	-	88	51.667	Gopherus_agassizii
ENSOARG00000002072	APOBEC1	76	45.604	ENSGAGG00000006624	-	63	45.604	Gopherus_agassizii
ENSOARG00000002072	APOBEC1	72	46.821	ENSGAGG00000004947	-	82	46.821	Gopherus_agassizii
ENSOARG00000002072	APOBEC1	98	61.277	ENSHGLG00000001495	APOBEC1	99	61.277	Heterocephalus_glaber_female
ENSOARG00000002072	APOBEC1	98	60.000	ENSHGLG00100002187	APOBEC1	99	60.000	Heterocephalus_glaber_male
ENSOARG00000002072	APOBEC1	90	59.535	ENSSTOG00000021971	APOBEC1	100	74.490	Ictidomys_tridecemlineatus
ENSOARG00000002072	APOBEC1	96	70.742	ENSJJAG00000022108	Apobec1	100	70.742	Jaculus_jaculus
ENSOARG00000002072	APOBEC1	93	72.197	ENSLAFG00000030837	APOBEC1	100	72.197	Loxodonta_africana
ENSOARG00000002072	APOBEC1	99	74.153	ENSMFAG00000000277	APOBEC1	99	76.316	Macaca_fascicularis
ENSOARG00000002072	APOBEC1	99	73.729	ENSMNEG00000029670	APOBEC1	100	73.729	Macaca_nemestrina
ENSOARG00000002072	APOBEC1	99	73.729	ENSMLEG00000036301	APOBEC1	100	73.729	Mandrillus_leucophaeus
ENSOARG00000002072	APOBEC1	90	66.204	ENSMAUG00000022167	Apobec1	97	66.204	Mesocricetus_auratus
ENSOARG00000002072	APOBEC1	99	71.610	ENSMICG00000043645	APOBEC1	100	71.610	Microcebus_murinus
ENSOARG00000002072	APOBEC1	99	63.136	ENSMODG00000018004	APOBEC1	100	63.136	Monodelphis_domestica
ENSOARG00000002072	APOBEC1	95	65.351	ENSMUSG00000040613	Apobec1	100	64.463	Mus_musculus
ENSOARG00000002072	APOBEC1	95	65.789	MGP_PahariEiJ_G0022580	-	99	65.789	Mus_pahari
ENSOARG00000002072	APOBEC1	95	65.351	MGP_SPRETEiJ_G0029857	Apobec1	100	64.463	Mus_spretus
ENSOARG00000002072	APOBEC1	99	73.305	ENSMPUG00000017532	APOBEC1	100	73.305	Mustela_putorius_furo
ENSOARG00000002072	APOBEC1	96	68.559	ENSNGAG00000022607	Apobec1	100	68.559	Nannospalax_galili
ENSOARG00000002072	APOBEC1	99	72.881	ENSNLEG00000005342	APOBEC1	100	72.881	Nomascus_leucogenys
ENSOARG00000002072	APOBEC1	99	59.746	ENSMEUG00000013406	APOBEC1	100	59.746	Notamacropus_eugenii
ENSOARG00000002072	APOBEC1	75	59.444	ENSOPRG00000009508	-	99	59.444	Ochotona_princeps
ENSOARG00000002072	APOBEC1	99	70.763	ENSOCUG00000025736	APOBEC1	88	70.763	Oryctolagus_cuniculus
ENSOARG00000002072	APOBEC1	97	70.130	ENSOGAG00000026415	APOBEC1	98	70.130	Otolemur_garnettii
ENSOARG00000002072	APOBEC1	97	67.532	ENSPPAG00000027657	APOBEC1	98	67.532	Pan_paniscus
ENSOARG00000002072	APOBEC1	99	75.000	ENSPPRG00000012182	APOBEC1	100	75.000	Panthera_pardus
ENSOARG00000002072	APOBEC1	99	75.000	ENSPTIG00000020280	APOBEC1	100	75.000	Panthera_tigris_altaica
ENSOARG00000002072	APOBEC1	99	73.305	ENSPTRG00000004614	APOBEC1	100	73.305	Pan_troglodytes
ENSOARG00000002072	APOBEC1	99	73.305	ENSPANG00000021027	APOBEC1	100	73.305	Papio_anubis
ENSOARG00000002072	APOBEC1	82	43.878	ENSPSIG00000012568	-	82	43.878	Pelodiscus_sinensis
ENSOARG00000002072	APOBEC1	57	48.624	ENSPSIG00000012791	-	73	48.624	Pelodiscus_sinensis
ENSOARG00000002072	APOBEC1	96	65.502	ENSPEMG00000023841	Apobec1	100	65.502	Peromyscus_maniculatus_bairdii
ENSOARG00000002072	APOBEC1	99	61.864	ENSPCIG00000023973	APOBEC1	100	61.864	Phascolarctos_cinereus
ENSOARG00000002072	APOBEC1	99	71.610	ENSPPYG00000004228	APOBEC1	95	71.610	Pongo_abelii
ENSOARG00000002072	APOBEC1	78	72.043	ENSPCAG00000008733	APOBEC1	99	72.043	Procavia_capensis
ENSOARG00000002072	APOBEC1	93	72.973	ENSPCOG00000013957	APOBEC1	98	72.973	Propithecus_coquereli
ENSOARG00000002072	APOBEC1	99	59.746	ENSPVAG00000010709	APOBEC1	100	59.746	Pteropus_vampyrus
ENSOARG00000002072	APOBEC1	95	64.912	ENSRNOG00000015411	Apobec1	99	64.912	Rattus_norvegicus
ENSOARG00000002072	APOBEC1	99	72.458	ENSRBIG00000031161	APOBEC1	100	72.458	Rhinopithecus_bieti
ENSOARG00000002072	APOBEC1	99	72.458	ENSRROG00000033576	APOBEC1	99	74.211	Rhinopithecus_roxellana
ENSOARG00000002072	APOBEC1	72	75.000	ENSSBOG00000030587	APOBEC1	97	75.000	Saimiri_boliviensis_boliviensis
ENSOARG00000002072	APOBEC1	95	62.555	ENSSHAG00000008925	APOBEC1	99	62.555	Sarcophilus_harrisii
ENSOARG00000002072	APOBEC1	55	66.667	ENSSARG00000011972	-	100	66.667	Sorex_araneus
ENSOARG00000002072	APOBEC1	72	66.082	ENSSARG00000000032	-	99	66.082	Sorex_araneus
ENSOARG00000002072	APOBEC1	87	40.758	ENSSPUG00000009044	-	81	40.758	Sphenodon_punctatus
ENSOARG00000002072	APOBEC1	99	77.966	ENSSSCG00000000668	APOBEC1	100	77.966	Sus_scrofa
ENSOARG00000002072	APOBEC1	61	48.630	ENSTGUG00000013118	-	100	48.630	Taeniopygia_guttata
ENSOARG00000002072	APOBEC1	92	66.968	ENSTBEG00000010043	APOBEC1	94	66.968	Tupaia_belangeri
ENSOARG00000002072	APOBEC1	78	77.957	ENSTTRG00000014015	APOBEC1	99	77.957	Tursiops_truncatus
ENSOARG00000002072	APOBEC1	97	74.026	ENSUAMG00000011636	APOBEC1	95	74.026	Ursus_americanus
ENSOARG00000002072	APOBEC1	97	74.026	ENSUMAG00000016552	APOBEC1	95	74.026	Ursus_maritimus
ENSOARG00000002072	APOBEC1	99	74.576	ENSVPAG00000001343	APOBEC1	100	74.576	Vicugna_pacos
ENSOARG00000002072	APOBEC1	99	73.305	ENSVVUG00000010522	APOBEC1	100	73.305	Vulpes_vulpes