EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000004575 (Gene tree)
Gene ID: 101117372
Gene Symbol: LSM2
Alias: -
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Plus strand
Length: 3769 bases
Position: chr20:26668451-26672219
Accession: 101117372
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000004896	LSM	PF01423.22	4.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000004979	LSM2-201	282	XM_004018938	ENSOARP00000004896	94 (aa)	XP_004018987	W5P396

Gene Model

Click here to download ENSOARG00000004575's gene model file

Pathways

Pathway ID	Pathway Name	Source
oas03018	RNA degradation	KEGG
oas03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000004575's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000004575	LSM2	79	34.211	ENSOARG00000012553	LSM4	65	32.558
ENSOARG00000004575	LSM2	76	32.394	ENSOARG00000008311	MIB1	58	32.394

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000004575	LSM2	100	100.000	ENSG00000204392	LSM2	99	100.000	Homo_sapiens
ENSOARG00000004575	LSM2	100	98.936	ENSAPOG00000017967	si:ch73-14h10.2	99	98.936	Acanthochromis_polyacanthus
ENSOARG00000004575	LSM2	100	100.000	ENSAMEG00000006483	LSM2	100	100.000	Ailuropoda_melanoleuca
ENSOARG00000004575	LSM2	100	98.936	ENSACIG00000007795	si:ch73-14h10.2	62	98.936	Amphilophus_citrinellus
ENSOARG00000004575	LSM2	100	98.936	ENSAOCG00000006949	si:ch73-14h10.2	78	98.936	Amphiprion_ocellaris
ENSOARG00000004575	LSM2	100	98.936	ENSAPEG00000020375	si:ch73-14h10.2	87	98.936	Amphiprion_percula
ENSOARG00000004575	LSM2	100	98.936	ENSATEG00000011376	si:ch73-14h10.2	99	98.936	Anabas_testudineus
ENSOARG00000004575	LSM2	100	100.000	ENSACAG00000017281	LSM2	90	100.000	Anolis_carolinensis
ENSOARG00000004575	LSM2	97	81.319	ENSANAG00000028033	-	96	81.319	Aotus_nancymaae
ENSOARG00000004575	LSM2	100	100.000	ENSANAG00000028372	LSM2	99	100.000	Aotus_nancymaae
ENSOARG00000004575	LSM2	100	98.936	ENSACLG00000024717	smx5	99	98.936	Astatotilapia_calliptera
ENSOARG00000004575	LSM2	100	98.936	ENSAMXG00000036868	si:ch73-14h10.2	99	98.936	Astyanax_mexicanus
ENSOARG00000004575	LSM2	100	100.000	ENSBTAG00000005634	LSM2	99	100.000	Bos_taurus
ENSOARG00000004575	LSM2	99	83.871	WBGene00001808	gut-2	96	83.871	Caenorhabditis_elegans
ENSOARG00000004575	LSM2	100	100.000	ENSCJAG00000040899	LSM2	99	100.000	Callithrix_jacchus
ENSOARG00000004575	LSM2	76	98.592	ENSCAFG00020016978	-	88	98.592	Canis_lupus_dingo
ENSOARG00000004575	LSM2	100	100.000	ENSCHIG00000016153	LSM2	100	100.000	Capra_hircus
ENSOARG00000004575	LSM2	99	89.247	ENSTSYG00000030015	-	99	89.247	Carlito_syrichta
ENSOARG00000004575	LSM2	100	100.000	ENSTSYG00000034844	LSM2	99	100.000	Carlito_syrichta
ENSOARG00000004575	LSM2	77	100.000	ENSCAPG00000009970	LSM2	92	100.000	Cavia_aperea
ENSOARG00000004575	LSM2	100	100.000	ENSCPOG00000021053	LSM2	99	100.000	Cavia_porcellus
ENSOARG00000004575	LSM2	100	100.000	ENSCCAG00000024276	LSM2	99	100.000	Cebus_capucinus
ENSOARG00000004575	LSM2	100	100.000	ENSCATG00000013737	LSM2	99	100.000	Cercocebus_atys
ENSOARG00000004575	LSM2	100	100.000	ENSCLAG00000008081	LSM2	99	100.000	Chinchilla_lanigera
ENSOARG00000004575	LSM2	100	100.000	ENSCSAG00000008800	LSM2	99	100.000	Chlorocebus_sabaeus
ENSOARG00000004575	LSM2	100	100.000	ENSCHOG00000007702	LSM2	99	100.000	Choloepus_hoffmanni
ENSOARG00000004575	LSM2	100	95.745	ENSCING00000022677	-	99	95.745	Ciona_intestinalis
ENSOARG00000004575	LSM2	100	100.000	ENSCANG00000039576	LSM2	99	100.000	Colobus_angolensis_palliatus
ENSOARG00000004575	LSM2	100	100.000	ENSCGRG00001013932	Lsm2	99	100.000	Cricetulus_griseus_chok1gshd
ENSOARG00000004575	LSM2	77	100.000	ENSCGRG00000013311	Lsm2	62	100.000	Cricetulus_griseus_crigri
ENSOARG00000004575	LSM2	100	98.936	ENSCSEG00000002911	si:ch73-14h10.2	99	98.936	Cynoglossus_semilaevis
ENSOARG00000004575	LSM2	100	98.936	ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	Cyprinodon_variegatus
ENSOARG00000004575	LSM2	100	98.936	ENSDARG00000070867	smx5	99	98.936	Danio_rerio
ENSOARG00000004575	LSM2	100	100.000	ENSDNOG00000002633	LSM2	100	100.000	Dasypus_novemcinctus
ENSOARG00000004575	LSM2	100	100.000	ENSDORG00000026571	Lsm2	99	100.000	Dipodomys_ordii
ENSOARG00000004575	LSM2	96	95.556	FBgn0036277	CG10418	95	95.556	Drosophila_melanogaster
ENSOARG00000004575	LSM2	100	100.000	ENSEASG00005015670	LSM2	79	100.000	Equus_asinus_asinus
ENSOARG00000004575	LSM2	100	100.000	ENSECAG00000018791	LSM2	79	100.000	Equus_caballus
ENSOARG00000004575	LSM2	100	100.000	ENSELUG00000008241	smx5	99	100.000	Esox_lucius
ENSOARG00000004575	LSM2	100	100.000	ENSFCAG00000045887	LSM2	99	100.000	Felis_catus
ENSOARG00000004575	LSM2	100	100.000	ENSFDAG00000000390	LSM2	99	100.000	Fukomys_damarensis
ENSOARG00000004575	LSM2	100	95.833	ENSFHEG00000009619	si:ch73-14h10.2	100	95.833	Fundulus_heteroclitus
ENSOARG00000004575	LSM2	100	98.936	ENSGMOG00000019208	si:ch73-14h10.2	100	98.936	Gadus_morhua
ENSOARG00000004575	LSM2	100	98.936	ENSGAFG00000017286	si:ch73-14h10.2	99	98.936	Gambusia_affinis
ENSOARG00000004575	LSM2	100	98.936	ENSGACG00000003827	si:ch73-14h10.2	99	98.936	Gasterosteus_aculeatus
ENSOARG00000004575	LSM2	100	100.000	ENSGAGG00000012458	LSM2	99	100.000	Gopherus_agassizii
ENSOARG00000004575	LSM2	100	100.000	ENSGGOG00000011383	LSM2	99	100.000	Gorilla_gorilla
ENSOARG00000004575	LSM2	100	100.000	ENSHGLG00000011299	LSM2	99	100.000	Heterocephalus_glaber_female
ENSOARG00000004575	LSM2	100	100.000	ENSHGLG00100017194	LSM2	99	100.000	Heterocephalus_glaber_male
ENSOARG00000004575	LSM2	100	98.936	ENSHCOG00000014057	si:ch73-14h10.2	99	98.936	Hippocampus_comes
ENSOARG00000004575	LSM2	100	98.936	ENSIPUG00000010539	lsm2	99	98.936	Ictalurus_punctatus
ENSOARG00000004575	LSM2	100	100.000	ENSSTOG00000013144	LSM2	99	100.000	Ictidomys_tridecemlineatus
ENSOARG00000004575	LSM2	95	77.528	ENSJJAG00000019477	-	100	77.528	Jaculus_jaculus
ENSOARG00000004575	LSM2	100	98.936	ENSKMAG00000014909	si:ch73-14h10.2	99	98.936	Kryptolebias_marmoratus
ENSOARG00000004575	LSM2	100	97.872	ENSLBEG00000025781	si:ch73-14h10.2	98	97.872	Labrus_bergylta
ENSOARG00000004575	LSM2	100	98.936	ENSLACG00000015064	LSM2	99	98.936	Latimeria_chalumnae
ENSOARG00000004575	LSM2	100	98.936	ENSLOCG00000005228	si:ch73-14h10.2	99	98.936	Lepisosteus_oculatus
ENSOARG00000004575	LSM2	100	100.000	ENSLAFG00000016139	LSM2	100	100.000	Loxodonta_africana
ENSOARG00000004575	LSM2	100	100.000	ENSMFAG00000001016	LSM2	99	100.000	Macaca_fascicularis
ENSOARG00000004575	LSM2	100	100.000	ENSMMUG00000006832	LSM2	99	100.000	Macaca_mulatta
ENSOARG00000004575	LSM2	100	81.915	ENSMMUG00000045473	-	97	81.915	Macaca_mulatta
ENSOARG00000004575	LSM2	100	100.000	ENSMNEG00000045355	LSM2	99	100.000	Macaca_nemestrina
ENSOARG00000004575	LSM2	80	85.333	ENSMNEG00000040973	-	91	85.333	Macaca_nemestrina
ENSOARG00000004575	LSM2	100	80.851	ENSMLEG00000031181	-	97	80.851	Mandrillus_leucophaeus
ENSOARG00000004575	LSM2	100	100.000	ENSMLEG00000037369	-	99	100.000	Mandrillus_leucophaeus
ENSOARG00000004575	LSM2	100	98.936	ENSMAMG00000010053	si:ch73-14h10.2	72	98.936	Mastacembelus_armatus
ENSOARG00000004575	LSM2	100	96.875	ENSMZEG00005008688	si:ch73-14h10.2	100	96.875	Maylandia_zebra
ENSOARG00000004575	LSM2	100	100.000	ENSMAUG00000021966	Lsm2	99	100.000	Mesocricetus_auratus
ENSOARG00000004575	LSM2	77	79.167	ENSMICG00000046764	-	92	79.167	Microcebus_murinus
ENSOARG00000004575	LSM2	100	100.000	ENSMOCG00000015306	Lsm2	99	100.000	Microtus_ochrogaster
ENSOARG00000004575	LSM2	100	97.872	ENSMMOG00000005603	si:ch73-14h10.2	100	97.872	Mola_mola
ENSOARG00000004575	LSM2	100	98.936	ENSMODG00000015177	LSM2	99	98.936	Monodelphis_domestica
ENSOARG00000004575	LSM2	100	98.936	ENSMALG00000016490	si:ch73-14h10.2	99	98.936	Monopterus_albus
ENSOARG00000004575	LSM2	100	100.000	MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	Mus_caroli
ENSOARG00000004575	LSM2	100	100.000	ENSMUSG00000007050	Lsm2	99	100.000	Mus_musculus
ENSOARG00000004575	LSM2	100	100.000	MGP_PahariEiJ_G0020485	Lsm2	99	100.000	Mus_pahari
ENSOARG00000004575	LSM2	100	100.000	MGP_SPRETEiJ_G0022395	Lsm2	99	100.000	Mus_spretus
ENSOARG00000004575	LSM2	100	100.000	ENSNGAG00000003997	Lsm2	99	100.000	Nannospalax_galili
ENSOARG00000004575	LSM2	100	96.875	ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	Neolamprologus_brichardi
ENSOARG00000004575	LSM2	100	100.000	ENSNLEG00000035542	LSM2	99	100.000	Nomascus_leucogenys
ENSOARG00000004575	LSM2	76	98.592	ENSMEUG00000003419	LSM2	100	98.592	Notamacropus_eugenii
ENSOARG00000004575	LSM2	100	100.000	ENSOPRG00000003668	LSM2	99	100.000	Ochotona_princeps
ENSOARG00000004575	LSM2	100	100.000	ENSODEG00000017583	LSM2	99	100.000	Octodon_degus
ENSOARG00000004575	LSM2	100	98.936	ENSONIG00000019321	si:ch73-14h10.2	99	98.936	Oreochromis_niloticus
ENSOARG00000004575	LSM2	100	100.000	ENSOANG00000005398	LSM2	100	100.000	Ornithorhynchus_anatinus
ENSOARG00000004575	LSM2	100	100.000	ENSOCUG00000002583	LSM2	99	100.000	Oryctolagus_cuniculus
ENSOARG00000004575	LSM2	100	98.936	ENSORLG00000029858	si:ch73-14h10.2	99	98.936	Oryzias_latipes
ENSOARG00000004575	LSM2	100	75.610	ENSORLG00015000465	si:ch73-14h10.2	99	75.610	Oryzias_latipes_hsok
ENSOARG00000004575	LSM2	100	98.936	ENSOMEG00000002892	si:ch73-14h10.2	99	98.936	Oryzias_melastigma
ENSOARG00000004575	LSM2	100	100.000	ENSPPAG00000032431	LSM2	99	100.000	Pan_paniscus
ENSOARG00000004575	LSM2	80	86.667	ENSPPAG00000043941	-	93	86.667	Pan_paniscus
ENSOARG00000004575	LSM2	100	100.000	ENSPPRG00000015353	LSM2	99	100.000	Panthera_pardus
ENSOARG00000004575	LSM2	100	100.000	ENSPTIG00000010303	LSM2	99	100.000	Panthera_tigris_altaica
ENSOARG00000004575	LSM2	100	100.000	ENSPTRG00000017986	LSM2	99	100.000	Pan_troglodytes
ENSOARG00000004575	LSM2	100	100.000	ENSPANG00000024577	LSM2	99	100.000	Papio_anubis
ENSOARG00000004575	LSM2	100	98.936	ENSPKIG00000007028	si:ch73-14h10.2	99	98.936	Paramormyrops_kingsleyae
ENSOARG00000004575	LSM2	100	100.000	ENSPSIG00000004458	LSM2	78	100.000	Pelodiscus_sinensis
ENSOARG00000004575	LSM2	100	96.809	ENSPMGG00000018511	si:ch73-14h10.2	100	96.809	Periophthalmus_magnuspinnatus
ENSOARG00000004575	LSM2	100	98.936	ENSPCIG00000018560	-	95	98.936	Phascolarctos_cinereus
ENSOARG00000004575	LSM2	100	98.936	ENSPFOG00000001621	si:ch73-14h10.2	99	98.936	Poecilia_formosa
ENSOARG00000004575	LSM2	100	98.936	ENSPLAG00000017165	si:ch73-14h10.2	99	98.936	Poecilia_latipinna
ENSOARG00000004575	LSM2	100	98.936	ENSPMEG00000019574	si:ch73-14h10.2	99	98.936	Poecilia_mexicana
ENSOARG00000004575	LSM2	100	97.872	ENSPREG00000016534	si:ch73-14h10.2	100	97.872	Poecilia_reticulata
ENSOARG00000004575	LSM2	100	100.000	ENSPPYG00000016461	-	53	100.000	Pongo_abelii
ENSOARG00000004575	LSM2	100	100.000	ENSPCAG00000013737	LSM2	99	100.000	Procavia_capensis
ENSOARG00000004575	LSM2	100	100.000	ENSPCOG00000020134	LSM2	99	100.000	Propithecus_coquereli
ENSOARG00000004575	LSM2	100	100.000	ENSPVAG00000012405	LSM2	99	100.000	Pteropus_vampyrus
ENSOARG00000004575	LSM2	100	98.936	ENSPNYG00000019298	smx5	99	98.936	Pundamilia_nyererei
ENSOARG00000004575	LSM2	100	98.936	ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	Pygocentrus_nattereri
ENSOARG00000004575	LSM2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSOARG00000004575	LSM2	100	100.000	ENSRNOG00000048725	Lsm2	99	100.000	Rattus_norvegicus
ENSOARG00000004575	LSM2	80	86.667	ENSRBIG00000011356	-	91	86.667	Rhinopithecus_bieti
ENSOARG00000004575	LSM2	100	100.000	ENSRBIG00000010172	LSM2	99	100.000	Rhinopithecus_bieti
ENSOARG00000004575	LSM2	100	100.000	ENSRROG00000030345	LSM2	99	100.000	Rhinopithecus_roxellana
ENSOARG00000004575	LSM2	80	86.667	ENSRROG00000030708	-	91	86.667	Rhinopithecus_roxellana
ENSOARG00000004575	LSM2	100	62.766	YBL026W	LSM2	99	62.766	Saccharomyces_cerevisiae
ENSOARG00000004575	LSM2	100	100.000	ENSSBOG00000018943	LSM2	99	100.000	Saimiri_boliviensis_boliviensis
ENSOARG00000004575	LSM2	100	98.936	ENSSFOG00015006734	lsm2	99	98.936	Scleropages_formosus
ENSOARG00000004575	LSM2	100	98.936	ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	Scophthalmus_maximus
ENSOARG00000004575	LSM2	100	98.936	ENSSDUG00000021605	smx5	99	98.936	Seriola_dumerili
ENSOARG00000004575	LSM2	100	98.936	ENSSLDG00000002765	si:ch73-14h10.2	99	98.936	Seriola_lalandi_dorsalis
ENSOARG00000004575	LSM2	100	98.936	ENSSPUG00000009631	LSM2	99	98.936	Sphenodon_punctatus
ENSOARG00000004575	LSM2	100	98.936	ENSSPAG00000016904	si:ch73-14h10.2	99	98.936	Stegastes_partitus
ENSOARG00000004575	LSM2	100	100.000	ENSSSCG00000039021	LSM2	99	100.000	Sus_scrofa
ENSOARG00000004575	LSM2	100	97.872	ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	Takifugu_rubripes
ENSOARG00000004575	LSM2	70	95.455	ENSTNIG00000013770	si:ch73-14h10.2	99	95.455	Tetraodon_nigroviridis
ENSOARG00000004575	LSM2	100	100.000	ENSTTRG00000014131	LSM2	99	100.000	Tursiops_truncatus
ENSOARG00000004575	LSM2	100	100.000	ENSUMAG00000013425	LSM2	65	100.000	Ursus_maritimus
ENSOARG00000004575	LSM2	100	100.000	ENSVPAG00000001761	LSM2	100	100.000	Vicugna_pacos
ENSOARG00000004575	LSM2	80	98.667	ENSVVUG00000016264	-	93	98.667	Vulpes_vulpes
ENSOARG00000004575	LSM2	100	98.936	ENSXETG00000024077	lsm2	99	98.936	Xenopus_tropicalis
ENSOARG00000004575	LSM2	100	97.872	ENSXCOG00000006078	si:ch73-14h10.2	100	97.872	Xiphophorus_couchianus
ENSOARG00000004575	LSM2	100	97.872	ENSXMAG00000028018	si:ch73-14h10.2	100	97.872	Xiphophorus_maculatus