EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000004578 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Plus strand
Length: 24008 bases
Position: chr13:72870429-72894436
Accession: 101107378
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000004898	PABP	PF00658.18	8e-27	1	1
ENSOARP00000004898	RRM_5	PF13893.6	1.5e-08	1	1
ENSOARP00000004898	RRM_1	PF00076.22	4.2e-91	1	4
ENSOARP00000004898	RRM_1	PF00076.22	4.2e-91	2	4
ENSOARP00000004898	RRM_1	PF00076.22	4.2e-91	3	4
ENSOARP00000004898	RRM_1	PF00076.22	4.2e-91	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000004981	PABPC1L-201	1842	XM_004014849	ENSOARP00000004898	614 (aa)	XP_004014898	W5P398

Gene Model

Click here to download ENSOARG00000004578's gene model file

Pathways

Pathway ID	Pathway Name	Source
oas03013	RNA transport	KEGG
oas03015	mRNA surveillance pathway	KEGG
oas03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000004578's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000004578	PABPC1L	99	64.660	ENSOARG00000020060	PABPC4	98	64.580
ENSOARG00000004578	PABPC1L	56	30.128	ENSOARG00000002677	-	62	30.128
ENSOARG00000004578	PABPC1L	50	30.921	ENSOARG00000003049	-	93	30.921
ENSOARG00000004578	PABPC1L	56	31.707	ENSOARG00000015434	HNRNPA0	55	32.692
ENSOARG00000004578	PABPC1L	61	30.263	ENSOARG00000004264	ELAVL4	87	30.263
ENSOARG00000004578	PABPC1L	97	67.314	ENSOARG00000000095	PABPC1	97	67.314
ENSOARG00000004578	PABPC1L	70	32.447	ENSOARG00000002547	RBM28	74	31.892
ENSOARG00000004578	PABPC1L	50	35.616	ENSOARG00000021028	CELF3	70	35.616
ENSOARG00000004578	PABPC1L	60	60.393	ENSOARG00000010260	PABPC5	96	60.331
ENSOARG00000004578	PABPC1L	59	36.508	ENSOARG00000020718	-	54	36.508
ENSOARG00000004578	PABPC1L	61	30.921	ENSOARG00000014465	ELAVL2	88	30.921
ENSOARG00000004578	PABPC1L	66	30.409	ENSOARG00000002680	TIAL1	76	30.114
ENSOARG00000004578	PABPC1L	60	70.918	ENSOARG00000005943	-	98	70.918

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000004578	PABPC1L	99	87.377	ENSG00000101104	PABPC1L	99	94.444	Homo_sapiens
ENSOARG00000004578	PABPC1L	99	66.613	ENSAPOG00000010842	pabpc1l	99	66.452	Acanthochromis_polyacanthus
ENSOARG00000004578	PABPC1L	99	78.891	ENSAMEG00000004099	PABPC1L	100	80.408	Ailuropoda_melanoleuca
ENSOARG00000004578	PABPC1L	98	73.430	ENSACIG00000021004	-	99	73.430	Amphilophus_citrinellus
ENSOARG00000004578	PABPC1L	99	67.308	ENSAOCG00000006167	-	99	67.464	Amphiprion_ocellaris
ENSOARG00000004578	PABPC1L	99	71.106	ENSAPEG00000010558	-	97	81.683	Amphiprion_percula
ENSOARG00000004578	PABPC1L	99	68.780	ENSATEG00000007428	pabpc1l	99	68.780	Anabas_testudineus
ENSOARG00000004578	PABPC1L	97	73.616	ENSAPLG00000008415	PABPC1L	99	73.548	Anas_platyrhynchos
ENSOARG00000004578	PABPC1L	99	73.355	ENSACAG00000011841	PABPC1L	98	73.355	Anolis_carolinensis
ENSOARG00000004578	PABPC1L	99	85.246	ENSANAG00000026826	PABPC1L	99	85.246	Aotus_nancymaae
ENSOARG00000004578	PABPC1L	99	67.252	ENSACLG00000024791	pabpc1l	99	67.252	Astatotilapia_calliptera
ENSOARG00000004578	PABPC1L	99	69.984	ENSAMXG00000013552	pabpc1l	99	69.984	Astyanax_mexicanus
ENSOARG00000004578	PABPC1L	59	99.405	ENSBTAG00000055300	-	100	99.405	Bos_taurus
ENSOARG00000004578	PABPC1L	67	82.807	ENSBTAG00000016849	PABPC1L	84	82.807	Bos_taurus
ENSOARG00000004578	PABPC1L	99	85.738	ENSCJAG00000017628	PABPC1L	99	85.738	Callithrix_jacchus
ENSOARG00000004578	PABPC1L	60	78.161	ENSCJAG00000038506	-	100	78.161	Callithrix_jacchus
ENSOARG00000004578	PABPC1L	99	78.328	ENSCAFG00000009573	PABPC1L	100	78.328	Canis_familiaris
ENSOARG00000004578	PABPC1L	99	88.633	ENSCAFG00020013828	PABPC1L	99	88.633	Canis_lupus_dingo
ENSOARG00000004578	PABPC1L	97	96.321	ENSCHIG00000025759	PABPC1L	91	96.321	Capra_hircus
ENSOARG00000004578	PABPC1L	99	84.426	ENSTSYG00000006645	PABPC1L	99	84.426	Carlito_syrichta
ENSOARG00000004578	PABPC1L	98	77.819	ENSCAPG00000014519	PABPC1L	99	77.819	Cavia_aperea
ENSOARG00000004578	PABPC1L	99	80.782	ENSCPOG00000013633	PABPC1L	99	80.782	Cavia_porcellus
ENSOARG00000004578	PABPC1L	99	85.574	ENSCCAG00000023338	PABPC1L	99	85.574	Cebus_capucinus
ENSOARG00000004578	PABPC1L	99	87.377	ENSCATG00000034065	PABPC1L	99	87.377	Cercocebus_atys
ENSOARG00000004578	PABPC1L	99	80.782	ENSCLAG00000005298	PABPC1L	99	81.107	Chinchilla_lanigera
ENSOARG00000004578	PABPC1L	99	87.213	ENSCSAG00000014242	PABPC1L	99	87.213	Chlorocebus_sabaeus
ENSOARG00000004578	PABPC1L	54	81.679	ENSCPBG00000007810	-	83	81.679	Chrysemys_picta_bellii
ENSOARG00000004578	PABPC1L	72	83.408	ENSCPBG00000017755	-	99	83.408	Chrysemys_picta_bellii
ENSOARG00000004578	PABPC1L	97	50.511	ENSCING00000002796	-	97	50.612	Ciona_intestinalis
ENSOARG00000004578	PABPC1L	98	69.821	ENSCSAVG00000004246	-	89	72.222	Ciona_savignyi
ENSOARG00000004578	PABPC1L	98	56.808	ENSCSAVG00000003102	-	100	81.507	Ciona_savignyi
ENSOARG00000004578	PABPC1L	99	83.199	ENSCANG00000037530	PABPC1L	99	83.199	Colobus_angolensis_palliatus
ENSOARG00000004578	PABPC1L	99	74.513	ENSCGRG00001021938	Pabpc1l	99	74.513	Cricetulus_griseus_chok1gshd
ENSOARG00000004578	PABPC1L	99	74.513	ENSCGRG00000007946	Pabpc1l	99	74.513	Cricetulus_griseus_crigri
ENSOARG00000004578	PABPC1L	98	64.793	ENSCSEG00000021295	pabpc1l	99	64.793	Cynoglossus_semilaevis
ENSOARG00000004578	PABPC1L	99	68.404	ENSCVAG00000015943	-	86	87.023	Cyprinodon_variegatus
ENSOARG00000004578	PABPC1L	99	69.775	ENSDARG00000002597	pabpc1l	88	87.692	Danio_rerio
ENSOARG00000004578	PABPC1L	99	87.276	ENSDNOG00000048450	PABPC1L	99	87.276	Dasypus_novemcinctus
ENSOARG00000004578	PABPC1L	99	82.871	ENSDORG00000001067	Pabpc1l	99	82.871	Dipodomys_ordii
ENSOARG00000004578	PABPC1L	95	91.057	ENSETEG00000009969	PABPC1L	72	91.057	Echinops_telfairi
ENSOARG00000004578	PABPC1L	59	96.429	ENSEASG00005023408	-	100	96.429	Equus_asinus_asinus
ENSOARG00000004578	PABPC1L	58	79.798	ENSEASG00005023407	-	80	79.798	Equus_asinus_asinus
ENSOARG00000004578	PABPC1L	66	91.189	ENSECAG00000040139	-	81	91.189	Equus_caballus
ENSOARG00000004578	PABPC1L	99	82.843	ENSEEUG00000005978	PABPC1L	99	82.843	Erinaceus_europaeus
ENSOARG00000004578	PABPC1L	99	69.649	ENSELUG00000001811	pabpc1l	99	69.649	Esox_lucius
ENSOARG00000004578	PABPC1L	99	88.962	ENSFCAG00000011692	PABPC1L	99	88.962	Felis_catus
ENSOARG00000004578	PABPC1L	84	77.799	ENSFALG00000005372	PABPC1L	87	77.799	Ficedula_albicollis
ENSOARG00000004578	PABPC1L	99	80.492	ENSFDAG00000008291	PABPC1L	99	80.656	Fukomys_damarensis
ENSOARG00000004578	PABPC1L	99	69.417	ENSFHEG00000003398	pabpc1l	99	69.417	Fundulus_heteroclitus
ENSOARG00000004578	PABPC1L	99	68.618	ENSGMOG00000004437	pabpc1l	98	68.618	Gadus_morhua
ENSOARG00000004578	PABPC1L	97	70.275	ENSGALG00000004123	PABPC1L	99	85.132	Gallus_gallus
ENSOARG00000004578	PABPC1L	99	64.923	ENSGAFG00000021057	pabpc1l	99	64.923	Gambusia_affinis
ENSOARG00000004578	PABPC1L	99	66.399	ENSGACG00000002792	pabpc1l	99	66.399	Gasterosteus_aculeatus
ENSOARG00000004578	PABPC1L	99	75.563	ENSGAGG00000000589	PABPC1L	98	75.563	Gopherus_agassizii
ENSOARG00000004578	PABPC1L	99	87.377	ENSGGOG00000004584	PABPC1L	99	87.377	Gorilla_gorilla
ENSOARG00000004578	PABPC1L	99	67.093	ENSHBUG00000006134	pabpc1l	99	67.093	Haplochromis_burtoni
ENSOARG00000004578	PABPC1L	99	81.818	ENSHGLG00000008434	PABPC1L	99	81.818	Heterocephalus_glaber_female
ENSOARG00000004578	PABPC1L	99	81.818	ENSHGLG00100012151	PABPC1L	99	81.818	Heterocephalus_glaber_male
ENSOARG00000004578	PABPC1L	59	83.146	ENSHGLG00100019506	-	100	83.146	Heterocephalus_glaber_male
ENSOARG00000004578	PABPC1L	99	66.502	ENSHCOG00000009270	pabpc1l	99	66.667	Hippocampus_comes
ENSOARG00000004578	PABPC1L	59	60.345	ENSIPUG00000006760	-	88	60.345	Ictalurus_punctatus
ENSOARG00000004578	PABPC1L	99	70.740	ENSIPUG00000012602	pabpc1l	99	70.740	Ictalurus_punctatus
ENSOARG00000004578	PABPC1L	60	60.345	ENSIPUG00000006780	-	85	60.345	Ictalurus_punctatus
ENSOARG00000004578	PABPC1L	99	86.700	ENSSTOG00000003739	PABPC1L	99	86.700	Ictidomys_tridecemlineatus
ENSOARG00000004578	PABPC1L	99	66.485	ENSJJAG00000022406	Pabpc1l	99	63.577	Jaculus_jaculus
ENSOARG00000004578	PABPC1L	99	68.352	ENSKMAG00000016847	pabpc1l	99	68.352	Kryptolebias_marmoratus
ENSOARG00000004578	PABPC1L	99	67.040	ENSLBEG00000010084	pabpc1l	99	67.147	Labrus_bergylta
ENSOARG00000004578	PABPC1L	99	69.668	ENSLACG00000005762	PABPC1L	99	69.668	Latimeria_chalumnae
ENSOARG00000004578	PABPC1L	99	71.108	ENSLOCG00000007519	pabpc1l	98	71.108	Lepisosteus_oculatus
ENSOARG00000004578	PABPC1L	99	82.532	ENSLAFG00000003553	PABPC1L	100	82.532	Loxodonta_africana
ENSOARG00000004578	PABPC1L	99	87.377	ENSMFAG00000040365	PABPC1L	99	87.377	Macaca_fascicularis
ENSOARG00000004578	PABPC1L	99	85.155	ENSMNEG00000032298	PABPC1L	99	85.155	Macaca_nemestrina
ENSOARG00000004578	PABPC1L	99	87.377	ENSMLEG00000043139	PABPC1L	99	87.377	Mandrillus_leucophaeus
ENSOARG00000004578	PABPC1L	98	66.937	ENSMAMG00000011854	pabpc1l	98	66.937	Mastacembelus_armatus
ENSOARG00000004578	PABPC1L	99	67.252	ENSMZEG00005023713	pabpc1l	99	67.252	Maylandia_zebra
ENSOARG00000004578	PABPC1L	99	74.519	ENSMGAG00000003674	PABPC1L	98	74.519	Meleagris_gallopavo
ENSOARG00000004578	PABPC1L	99	74.837	ENSMOCG00000013186	Pabpc1l	99	74.837	Microtus_ochrogaster
ENSOARG00000004578	PABPC1L	99	67.685	ENSMMOG00000020574	-	90	87.692	Mola_mola
ENSOARG00000004578	PABPC1L	94	77.094	ENSMODG00000016198	PABPC1L	99	77.243	Monodelphis_domestica
ENSOARG00000004578	PABPC1L	97	68.040	ENSMALG00000021622	pabpc1l	100	68.040	Monopterus_albus
ENSOARG00000004578	PABPC1L	99	75.000	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	75.000	Mus_caroli
ENSOARG00000004578	PABPC1L	99	75.000	ENSMUSG00000054582	Pabpc1l	99	75.000	Mus_musculus
ENSOARG00000004578	PABPC1L	99	75.204	MGP_PahariEiJ_G0026071	Pabpc1l	99	75.204	Mus_pahari
ENSOARG00000004578	PABPC1L	99	75.000	MGP_SPRETEiJ_G0025549	Pabpc1l	99	75.000	Mus_spretus
ENSOARG00000004578	PABPC1L	99	86.851	ENSMPUG00000017646	PABPC1L	99	86.851	Mustela_putorius_furo
ENSOARG00000004578	PABPC1L	98	80.259	ENSMLUG00000006324	PABPC1L	97	80.259	Myotis_lucifugus
ENSOARG00000004578	PABPC1L	99	77.435	ENSNGAG00000010458	Pabpc1l	99	77.435	Nannospalax_galili
ENSOARG00000004578	PABPC1L	98	73.798	ENSNBRG00000016633	pabpc1l	99	73.798	Neolamprologus_brichardi
ENSOARG00000004578	PABPC1L	89	73.091	ENSMEUG00000007905	-	89	73.091	Notamacropus_eugenii
ENSOARG00000004578	PABPC1L	99	83.961	ENSOPRG00000011846	PABPC1L	99	83.961	Ochotona_princeps
ENSOARG00000004578	PABPC1L	58	76.250	ENSODEG00000002920	-	97	76.250	Octodon_degus
ENSOARG00000004578	PABPC1L	99	75.082	ENSODEG00000015482	PABPC1L	99	75.082	Octodon_degus
ENSOARG00000004578	PABPC1L	99	67.412	ENSONIG00000017314	pabpc1l	99	67.412	Oreochromis_niloticus
ENSOARG00000004578	PABPC1L	89	66.126	ENSOANG00000015793	-	100	66.126	Ornithorhynchus_anatinus
ENSOARG00000004578	PABPC1L	99	76.579	ENSOCUG00000003005	PABPC1L	100	76.462	Oryctolagus_cuniculus
ENSOARG00000004578	PABPC1L	99	66.774	ENSORLG00000010322	pabpc1l	99	72.834	Oryzias_latipes
ENSOARG00000004578	PABPC1L	99	67.045	ENSORLG00020021193	pabpc1l	99	72.834	Oryzias_latipes_hni
ENSOARG00000004578	PABPC1L	99	66.613	ENSORLG00015017018	pabpc1l	99	72.834	Oryzias_latipes_hsok
ENSOARG00000004578	PABPC1L	99	64.526	ENSOMEG00000010789	pabpc1l	99	64.526	Oryzias_melastigma
ENSOARG00000004578	PABPC1L	99	83.387	ENSOGAG00000032999	PABPC1L	100	83.387	Otolemur_garnettii
ENSOARG00000004578	PABPC1L	99	87.213	ENSPPAG00000039677	PABPC1L	99	87.213	Pan_paniscus
ENSOARG00000004578	PABPC1L	63	83.333	ENSPPRG00000019327	-	98	83.333	Panthera_pardus
ENSOARG00000004578	PABPC1L	98	88.852	ENSPTIG00000006524	PABPC1L	99	88.852	Panthera_tigris_altaica
ENSOARG00000004578	PABPC1L	63	94.136	ENSPTRG00000013531	PABPC1L	99	94.136	Pan_troglodytes
ENSOARG00000004578	PABPC1L	99	87.377	ENSPANG00000018788	PABPC1L	99	87.377	Papio_anubis
ENSOARG00000004578	PABPC1L	99	70.806	ENSPKIG00000007322	pabpc1l	99	70.806	Paramormyrops_kingsleyae
ENSOARG00000004578	PABPC1L	53	83.206	ENSPKIG00000016810	-	93	83.206	Paramormyrops_kingsleyae
ENSOARG00000004578	PABPC1L	68	84.652	ENSPSIG00000013289	PABPC1L	99	84.652	Pelodiscus_sinensis
ENSOARG00000004578	PABPC1L	63	86.364	ENSPMGG00000023117	pabpc1l	92	86.364	Periophthalmus_magnuspinnatus
ENSOARG00000004578	PABPC1L	71	69.430	ENSPMGG00000023121	-	90	69.430	Periophthalmus_magnuspinnatus
ENSOARG00000004578	PABPC1L	99	74.513	ENSPEMG00000020671	Pabpc1l	99	74.675	Peromyscus_maniculatus_bairdii
ENSOARG00000004578	PABPC1L	99	68.567	ENSPFOG00000013241	pabpc1l	99	68.447	Poecilia_formosa
ENSOARG00000004578	PABPC1L	99	68.447	ENSPLAG00000017490	-	99	68.447	Poecilia_latipinna
ENSOARG00000004578	PABPC1L	53	88.462	ENSPLAG00000023686	-	92	88.462	Poecilia_latipinna
ENSOARG00000004578	PABPC1L	53	88.462	ENSPMEG00000009185	-	88	88.462	Poecilia_mexicana
ENSOARG00000004578	PABPC1L	99	68.720	ENSPMEG00000007677	pabpc1l	99	68.720	Poecilia_mexicana
ENSOARG00000004578	PABPC1L	67	77.724	ENSPREG00000015886	pabpc1l	99	77.724	Poecilia_reticulata
ENSOARG00000004578	PABPC1L	99	87.849	ENSPPYG00000011042	PABPC1L	99	87.849	Pongo_abelii
ENSOARG00000004578	PABPC1L	62	93.750	ENSPCAG00000011787	-	75	93.750	Procavia_capensis
ENSOARG00000004578	PABPC1L	99	85.550	ENSPCOG00000020630	PABPC1L	99	85.550	Propithecus_coquereli
ENSOARG00000004578	PABPC1L	99	86.326	ENSPVAG00000012663	PABPC1L	99	86.326	Pteropus_vampyrus
ENSOARG00000004578	PABPC1L	98	73.798	ENSPNYG00000004101	pabpc1l	99	73.798	Pundamilia_nyererei
ENSOARG00000004578	PABPC1L	99	63.183	ENSPNAG00000021248	pabpc1l	99	63.183	Pygocentrus_nattereri
ENSOARG00000004578	PABPC1L	99	73.821	ENSRNOG00000012750	Pabpc1l	99	74.346	Rattus_norvegicus
ENSOARG00000004578	PABPC1L	99	87.377	ENSRBIG00000035381	PABPC1L	99	87.377	Rhinopithecus_bieti
ENSOARG00000004578	PABPC1L	99	87.213	ENSRROG00000044498	PABPC1L	99	87.213	Rhinopithecus_roxellana
ENSOARG00000004578	PABPC1L	99	85.902	ENSSBOG00000009532	-	99	85.902	Saimiri_boliviensis_boliviensis
ENSOARG00000004578	PABPC1L	97	71.138	ENSSHAG00000011446	PABPC1L	100	71.138	Sarcophilus_harrisii
ENSOARG00000004578	PABPC1L	99	72.097	ENSSFOG00015017304	pabpc1l	99	72.097	Scleropages_formosus
ENSOARG00000004578	PABPC1L	99	67.742	ENSSMAG00000010516	pabpc1l	93	87.597	Scophthalmus_maximus
ENSOARG00000004578	PABPC1L	99	67.937	ENSSDUG00000014743	pabpc1l	99	67.937	Seriola_dumerili
ENSOARG00000004578	PABPC1L	98	71.783	ENSSLDG00000006981	pabpc1l	98	78.995	Seriola_lalandi_dorsalis
ENSOARG00000004578	PABPC1L	99	73.355	ENSSPUG00000004233	PABPC1L	98	73.355	Sphenodon_punctatus
ENSOARG00000004578	PABPC1L	99	65.954	ENSSPAG00000017137	pabpc1l	99	65.954	Stegastes_partitus
ENSOARG00000004578	PABPC1L	99	88.072	ENSSSCG00000007382	PABPC1L	100	88.072	Sus_scrofa
ENSOARG00000004578	PABPC1L	99	73.734	ENSTGUG00000005114	PABPC1L	99	73.734	Taeniopygia_guttata
ENSOARG00000004578	PABPC1L	97	67.103	ENSTRUG00000011085	pabpc1l	97	67.103	Takifugu_rubripes
ENSOARG00000004578	PABPC1L	99	64.480	ENSTNIG00000017903	pabpc1l	98	64.480	Tetraodon_nigroviridis
ENSOARG00000004578	PABPC1L	93	95.205	ENSTBEG00000002851	PABPC1L	79	95.205	Tupaia_belangeri
ENSOARG00000004578	PABPC1L	94	88.715	ENSTTRG00000007618	PABPC1L	100	88.682	Tursiops_truncatus
ENSOARG00000004578	PABPC1L	100	84.853	ENSUAMG00000017682	PABPC1L	99	84.853	Ursus_americanus
ENSOARG00000004578	PABPC1L	67	92.412	ENSUMAG00000025436	PABPC1L	94	92.412	Ursus_maritimus
ENSOARG00000004578	PABPC1L	97	95.257	ENSVVUG00000018939	PABPC1L	98	95.257	Vulpes_vulpes
ENSOARG00000004578	PABPC1L	99	69.293	ENSXETG00000022831	pabpc1l	98	69.293	Xenopus_tropicalis
ENSOARG00000004578	PABPC1L	98	73.976	ENSXCOG00000005459	pabpc1l	99	83.688	Xiphophorus_couchianus
ENSOARG00000004578	PABPC1L	99	68.285	ENSXMAG00000017135	pabpc1l	99	68.285	Xiphophorus_maculatus