EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOARG00000006343 (Gene tree)
Gene ID: 101106821
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Plus strand
Length: 110800 bases
Position: chr1:244614170-244724969
Accession: 101106821
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000006811	XRN_N	PF03159.18	3.3e-96	1	1
ENSOARP00000006816	XRN_N	PF03159.18	8.3e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000006915	XRN1-201	5481	-	ENSOARP00000006811	1739 (aa)	-	W5P8Q5
ENSOART00000006920	XRN1-202	5370	XM_004003873	ENSOARP00000006816	1702 (aa)	XP_004003922	W5P8Q9

Gene Model

Click here to download ENSOARG00000006343's gene model file

Pathways

Pathway ID	Pathway Name	Source
oas03008	Ribosome biogenesis in eukaryotes	KEGG
oas03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000006343's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000006343	XRN1	99	92.258	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSOARG00000006343	XRN1	95	72.786	ENSAPOG00000000622	xrn1	98	72.786	Acanthochromis_polyacanthus
ENSOARG00000006343	XRN1	99	93.356	ENSAMEG00000012538	XRN1	99	93.528	Ailuropoda_melanoleuca
ENSOARG00000006343	XRN1	95	72.425	ENSACIG00000001057	xrn1	98	72.344	Amphilophus_citrinellus
ENSOARG00000006343	XRN1	94	71.178	ENSAOCG00000014097	xrn1	98	71.178	Amphiprion_ocellaris
ENSOARG00000006343	XRN1	99	61.196	ENSAPEG00000006620	xrn1	91	72.494	Amphiprion_percula
ENSOARG00000006343	XRN1	94	70.747	ENSATEG00000009752	xrn1	99	70.761	Anabas_testudineus
ENSOARG00000006343	XRN1	98	76.240	ENSAPLG00000004905	XRN1	99	75.836	Anas_platyrhynchos
ENSOARG00000006343	XRN1	99	72.875	ENSACAG00000004985	XRN1	99	72.707	Anolis_carolinensis
ENSOARG00000006343	XRN1	99	92.493	ENSANAG00000029013	XRN1	99	95.322	Aotus_nancymaae
ENSOARG00000006343	XRN1	99	60.102	ENSACLG00000004806	xrn1	99	60.577	Astatotilapia_calliptera
ENSOARG00000006343	XRN1	99	60.399	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSOARG00000006343	XRN1	99	99.236	ENSBTAG00000011524	XRN1	99	99.236	Bos_taurus
ENSOARG00000006343	XRN1	71	39.530	WBGene00012730	xrn-1	81	38.943	Caenorhabditis_elegans
ENSOARG00000006343	XRN1	99	92.375	ENSCJAG00000001872	XRN1	99	92.375	Callithrix_jacchus
ENSOARG00000006343	XRN1	99	93.743	ENSCAFG00000007783	XRN1	99	93.915	Canis_familiaris
ENSOARG00000006343	XRN1	99	93.743	ENSCAFG00020009120	XRN1	99	98.204	Canis_lupus_dingo
ENSOARG00000006343	XRN1	100	98.390	ENSCHIG00000019192	XRN1	100	98.390	Capra_hircus
ENSOARG00000006343	XRN1	99	92.321	ENSTSYG00000002705	XRN1	99	92.321	Carlito_syrichta
ENSOARG00000006343	XRN1	55	76.119	ENSCAPG00000004604	-	99	76.119	Cavia_aperea
ENSOARG00000006343	XRN1	99	92.845	ENSCCAG00000034800	XRN1	99	96.197	Cebus_capucinus
ENSOARG00000006343	XRN1	99	92.727	ENSCATG00000041794	XRN1	99	92.903	Cercocebus_atys
ENSOARG00000006343	XRN1	99	87.615	ENSCLAG00000001451	XRN1	99	95.880	Chinchilla_lanigera
ENSOARG00000006343	XRN1	99	92.786	ENSCSAG00000011265	XRN1	99	92.962	Chlorocebus_sabaeus
ENSOARG00000006343	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSOARG00000006343	XRN1	70	45.199	ENSCSAVG00000008584	-	98	44.895	Ciona_savignyi
ENSOARG00000006343	XRN1	99	92.786	ENSCANG00000037495	XRN1	99	96.707	Colobus_angolensis_palliatus
ENSOARG00000006343	XRN1	99	88.563	ENSCGRG00001019411	Xrn1	99	95.087	Cricetulus_griseus_chok1gshd
ENSOARG00000006343	XRN1	99	88.563	ENSCGRG00000012464	Xrn1	99	95.087	Cricetulus_griseus_crigri
ENSOARG00000006343	XRN1	93	67.421	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSOARG00000006343	XRN1	67	72.046	ENSCVAG00000013089	xrn1	99	72.310	Cyprinodon_variegatus
ENSOARG00000006343	XRN1	99	62.436	ENSDARG00000091652	xrn1	98	79.536	Danio_rerio
ENSOARG00000006343	XRN1	99	87.393	ENSDORG00000013833	Xrn1	99	87.393	Dipodomys_ordii
ENSOARG00000006343	XRN1	75	39.291	FBgn0020261	pcm	76	39.363	Drosophila_melanogaster
ENSOARG00000006343	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSOARG00000006343	XRN1	99	93.079	ENSEASG00005002687	XRN1	99	96.707	Equus_asinus_asinus
ENSOARG00000006343	XRN1	99	93.079	ENSECAG00000008301	XRN1	99	93.255	Equus_caballus
ENSOARG00000006343	XRN1	92	83.187	ENSEEUG00000011323	XRN1	92	83.187	Erinaceus_europaeus
ENSOARG00000006343	XRN1	99	61.005	ENSELUG00000000169	xrn1	99	61.278	Esox_lucius
ENSOARG00000006343	XRN1	99	90.270	ENSFCAG00000027589	XRN1	99	97.143	Felis_catus
ENSOARG00000006343	XRN1	99	74.693	ENSFALG00000007021	XRN1	99	74.358	Ficedula_albicollis
ENSOARG00000006343	XRN1	99	89.450	ENSFDAG00000020494	XRN1	99	94.929	Fukomys_damarensis
ENSOARG00000006343	XRN1	84	67.574	ENSGMOG00000006396	xrn1	84	66.997	Gadus_morhua
ENSOARG00000006343	XRN1	99	75.293	ENSGALG00000002706	XRN1	99	74.902	Gallus_gallus
ENSOARG00000006343	XRN1	99	59.393	ENSGACG00000014328	xrn1	99	59.910	Gasterosteus_aculeatus
ENSOARG00000006343	XRN1	95	78.409	ENSGAGG00000017535	XRN1	99	78.110	Gopherus_agassizii
ENSOARG00000006343	XRN1	99	92.610	ENSGGOG00000008047	XRN1	99	92.610	Gorilla_gorilla
ENSOARG00000006343	XRN1	94	70.119	ENSHBUG00000005908	xrn1	98	72.336	Haplochromis_burtoni
ENSOARG00000006343	XRN1	99	90.315	ENSHGLG00000014476	XRN1	99	95.509	Heterocephalus_glaber_female
ENSOARG00000006343	XRN1	99	90.372	ENSHGLG00100015130	XRN1	99	95.509	Heterocephalus_glaber_male
ENSOARG00000006343	XRN1	96	71.095	ENSHCOG00000014062	xrn1	99	69.609	Hippocampus_comes
ENSOARG00000006343	XRN1	99	62.213	ENSIPUG00000015229	xrn1	99	62.357	Ictalurus_punctatus
ENSOARG00000006343	XRN1	99	91.681	ENSSTOG00000013552	XRN1	99	96.707	Ictidomys_tridecemlineatus
ENSOARG00000006343	XRN1	98	86.962	ENSJJAG00000010863	Xrn1	99	93.713	Jaculus_jaculus
ENSOARG00000006343	XRN1	94	61.722	ENSKMAG00000021356	xrn1	94	74.633	Kryptolebias_marmoratus
ENSOARG00000006343	XRN1	99	59.774	ENSLBEG00000018656	xrn1	99	94.286	Labrus_bergylta
ENSOARG00000006343	XRN1	99	69.396	ENSLACG00000009020	XRN1	99	69.422	Latimeria_chalumnae
ENSOARG00000006343	XRN1	99	65.367	ENSLOCG00000007944	xrn1	99	65.252	Lepisosteus_oculatus
ENSOARG00000006343	XRN1	63	95.416	ENSLAFG00000015426	XRN1	100	95.416	Loxodonta_africana
ENSOARG00000006343	XRN1	99	92.845	ENSMFAG00000032599	XRN1	99	93.021	Macaca_fascicularis
ENSOARG00000006343	XRN1	99	92.786	ENSMMUG00000014038	XRN1	99	92.962	Macaca_mulatta
ENSOARG00000006343	XRN1	99	92.610	ENSMNEG00000034217	XRN1	99	92.786	Macaca_nemestrina
ENSOARG00000006343	XRN1	94	70.662	ENSMAMG00000013219	xrn1	94	76.639	Mastacembelus_armatus
ENSOARG00000006343	XRN1	99	60.057	ENSMZEG00005015099	xrn1	99	60.476	Maylandia_zebra
ENSOARG00000006343	XRN1	99	75.115	ENSMGAG00000006333	XRN1	99	74.711	Meleagris_gallopavo
ENSOARG00000006343	XRN1	99	92.744	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSOARG00000006343	XRN1	57	94.295	ENSMOCG00000008665	Xrn1	99	94.295	Microtus_ochrogaster
ENSOARG00000006343	XRN1	99	82.662	ENSMODG00000021236	XRN1	99	82.604	Monodelphis_domestica
ENSOARG00000006343	XRN1	94	66.667	ENSMALG00000004098	xrn1	98	66.510	Monopterus_albus
ENSOARG00000006343	XRN1	99	79.518	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSOARG00000006343	XRN1	99	87.184	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSOARG00000006343	XRN1	99	87.241	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSOARG00000006343	XRN1	99	87.241	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSOARG00000006343	XRN1	99	94.135	ENSMPUG00000012040	XRN1	99	94.311	Mustela_putorius_furo
ENSOARG00000006343	XRN1	99	90.987	ENSMLUG00000016885	XRN1	99	90.987	Myotis_lucifugus
ENSOARG00000006343	XRN1	57	94.311	ENSNGAG00000023964	Xrn1	99	90.808	Nannospalax_galili
ENSOARG00000006343	XRN1	99	92.610	ENSNLEG00000004726	XRN1	99	92.786	Nomascus_leucogenys
ENSOARG00000006343	XRN1	76	98.969	ENSMEUG00000014473	-	77	99.029	Notamacropus_eugenii
ENSOARG00000006343	XRN1	79	84.370	ENSOPRG00000007337	-	78	84.370	Ochotona_princeps
ENSOARG00000006343	XRN1	99	61.060	ENSONIG00000016673	xrn1	99	64.748	Oreochromis_niloticus
ENSOARG00000006343	XRN1	92	77.672	ENSOANG00000006735	XRN1	99	77.609	Ornithorhynchus_anatinus
ENSOARG00000006343	XRN1	99	91.791	ENSOCUG00000001861	XRN1	99	91.791	Oryctolagus_cuniculus
ENSOARG00000006343	XRN1	94	72.538	ENSORLG00000013005	xrn1	97	72.458	Oryzias_latipes
ENSOARG00000006343	XRN1	94	72.032	ENSORLG00020005559	xrn1	97	72.458	Oryzias_latipes_hni
ENSOARG00000006343	XRN1	99	61.061	ENSORLG00015022523	xrn1	89	72.298	Oryzias_latipes_hsok
ENSOARG00000006343	XRN1	95	72.764	ENSOMEG00000015397	xrn1	99	72.764	Oryzias_melastigma
ENSOARG00000006343	XRN1	99	89.971	ENSOGAG00000000170	XRN1	99	89.971	Otolemur_garnettii
ENSOARG00000006343	XRN1	99	92.375	ENSPPAG00000010180	XRN1	99	92.375	Pan_paniscus
ENSOARG00000006343	XRN1	99	93.962	ENSPPRG00000007125	XRN1	99	94.138	Panthera_pardus
ENSOARG00000006343	XRN1	99	93.962	ENSPTIG00000021081	XRN1	99	94.138	Panthera_tigris_altaica
ENSOARG00000006343	XRN1	99	92.434	ENSPTRG00000015482	XRN1	99	92.434	Pan_troglodytes
ENSOARG00000006343	XRN1	99	92.845	ENSPANG00000010638	XRN1	99	92.845	Papio_anubis
ENSOARG00000006343	XRN1	99	76.888	ENSPSIG00000018050	XRN1	99	76.831	Pelodiscus_sinensis
ENSOARG00000006343	XRN1	57	77.080	ENSPMGG00000002648	xrn1	98	77.093	Periophthalmus_magnuspinnatus
ENSOARG00000006343	XRN1	57	94.929	ENSPEMG00000020610	Xrn1	99	94.929	Peromyscus_maniculatus_bairdii
ENSOARG00000006343	XRN1	65	50.210	ENSPMAG00000002975	xrn1	91	78.161	Petromyzon_marinus
ENSOARG00000006343	XRN1	95	88.003	ENSPCIG00000028735	XRN1	99	89.841	Phascolarctos_cinereus
ENSOARG00000006343	XRN1	90	64.653	ENSPFOG00000013932	xrn1	99	64.933	Poecilia_formosa
ENSOARG00000006343	XRN1	90	63.729	ENSPLAG00000021653	xrn1	99	64.277	Poecilia_latipinna
ENSOARG00000006343	XRN1	88	64.355	ENSPMEG00000003076	xrn1	95	64.637	Poecilia_mexicana
ENSOARG00000006343	XRN1	94	69.541	ENSPREG00000021147	xrn1	97	69.346	Poecilia_reticulata
ENSOARG00000006343	XRN1	99	92.434	ENSPPYG00000014172	XRN1	99	92.434	Pongo_abelii
ENSOARG00000006343	XRN1	91	82.383	ENSPCAG00000005638	XRN1	100	82.383	Procavia_capensis
ENSOARG00000006343	XRN1	99	92.907	ENSPCOG00000013089	XRN1	99	97.006	Propithecus_coquereli
ENSOARG00000006343	XRN1	96	92.288	ENSPVAG00000016265	XRN1	96	92.288	Pteropus_vampyrus
ENSOARG00000006343	XRN1	96	71.123	ENSPNYG00000010570	xrn1	98	71.123	Pundamilia_nyererei
ENSOARG00000006343	XRN1	99	60.219	ENSPNAG00000023531	xrn1	99	60.206	Pygocentrus_nattereri
ENSOARG00000006343	XRN1	99	87.874	ENSRNOG00000042951	Xrn1	99	87.874	Rattus_norvegicus
ENSOARG00000006343	XRN1	99	92.199	ENSRBIG00000041227	XRN1	99	92.317	Rhinopithecus_bieti
ENSOARG00000006343	XRN1	67	54.768	YGL173C	XRN1	73	54.768	Saccharomyces_cerevisiae
ENSOARG00000006343	XRN1	99	92.141	ENSSBOG00000029561	XRN1	99	92.141	Saimiri_boliviensis_boliviensis
ENSOARG00000006343	XRN1	98	81.802	ENSSHAG00000016207	XRN1	99	81.743	Sarcophilus_harrisii
ENSOARG00000006343	XRN1	99	61.397	ENSSFOG00015024211	xrn1	99	61.340	Scleropages_formosus
ENSOARG00000006343	XRN1	94	71.935	ENSSMAG00000016534	xrn1	98	71.855	Scophthalmus_maximus
ENSOARG00000006343	XRN1	90	72.276	ENSSDUG00000010306	xrn1	97	72.276	Seriola_dumerili
ENSOARG00000006343	XRN1	95	71.838	ENSSLDG00000021543	xrn1	99	71.838	Seriola_lalandi_dorsalis
ENSOARG00000006343	XRN1	68	85.021	ENSSARG00000007741	-	83	85.021	Sorex_araneus
ENSOARG00000006343	XRN1	99	76.963	ENSTGUG00000008498	XRN1	99	76.672	Taeniopygia_guttata
ENSOARG00000006343	XRN1	94	69.237	ENSTRUG00000004895	xrn1	96	75.992	Takifugu_rubripes
ENSOARG00000006343	XRN1	96	68.312	ENSTNIG00000017615	xrn1	99	58.338	Tetraodon_nigroviridis
ENSOARG00000006343	XRN1	85	98.113	ENSTBEG00000003256	XRN1	84	98.113	Tupaia_belangeri
ENSOARG00000006343	XRN1	99	91.774	ENSTTRG00000012914	XRN1	99	91.774	Tursiops_truncatus
ENSOARG00000006343	XRN1	99	93.200	ENSUAMG00000001608	XRN1	99	98.204	Ursus_americanus
ENSOARG00000006343	XRN1	99	95.076	ENSUMAG00000013625	XRN1	99	95.252	Ursus_maritimus
ENSOARG00000006343	XRN1	99	92.366	ENSVPAG00000004690	XRN1	99	92.366	Vicugna_pacos
ENSOARG00000006343	XRN1	99	94.897	ENSVVUG00000024461	XRN1	99	98.204	Vulpes_vulpes
ENSOARG00000006343	XRN1	99	69.656	ENSXETG00000000619	xrn1	97	88.710	Xenopus_tropicalis
ENSOARG00000006343	XRN1	99	61.561	ENSXCOG00000007917	xrn1	97	72.616	Xiphophorus_couchianus
ENSOARG00000006343	XRN1	92	71.964	ENSXMAG00000018320	xrn1	98	72.127	Xiphophorus_maculatus