EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000008509 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Minus strand
Length: 3539 bases
Position: chr17:11882325-11885863
Accession: 101109392
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000009125	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000009257	-	234	XM_004017216	ENSOARP00000009125	78 (aa)	XP_004017265	W5PFB0

Gene Model

Click here to download ENSOARG00000008509's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000008509's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000008509	-	88	92.754	ENSOARG00000011641	-	80	92.754
ENSOARG00000008509	-	79	48.387	ENSOARG00000011853	-	54	48.387
ENSOARG00000008509	-	86	31.343	ENSOARG00000000211	-	87	31.343

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000008509	-	88	100.000	ENSG00000164167	LSM6	86	100.000	Homo_sapiens
ENSOARG00000008509	-	88	97.101	ENSAPOG00000019832	lsm6	86	97.101	Acanthochromis_polyacanthus
ENSOARG00000008509	-	88	100.000	ENSAMEG00000016671	LSM6	86	100.000	Ailuropoda_melanoleuca
ENSOARG00000008509	-	88	97.101	ENSACIG00000016711	lsm6	86	97.101	Amphilophus_citrinellus
ENSOARG00000008509	-	90	95.714	ENSAPEG00000023992	lsm6	92	95.714	Amphiprion_percula
ENSOARG00000008509	-	88	97.101	ENSATEG00000012610	lsm6	86	97.101	Anabas_testudineus
ENSOARG00000008509	-	85	100.000	ENSAPLG00000012594	LSM6	85	100.000	Anas_platyrhynchos
ENSOARG00000008509	-	88	100.000	ENSACAG00000004004	LSM6	86	100.000	Anolis_carolinensis
ENSOARG00000008509	-	83	90.769	ENSANAG00000021839	-	87	90.769	Aotus_nancymaae
ENSOARG00000008509	-	88	100.000	ENSANAG00000030568	-	86	100.000	Aotus_nancymaae
ENSOARG00000008509	-	88	97.101	ENSACLG00000025621	lsm6	86	97.101	Astatotilapia_calliptera
ENSOARG00000008509	-	88	97.101	ENSAMXG00000038738	lsm6	86	97.101	Astyanax_mexicanus
ENSOARG00000008509	-	88	92.754	ENSBTAG00000052085	-	86	92.754	Bos_taurus
ENSOARG00000008509	-	88	100.000	ENSBTAG00000014060	LSM6	86	100.000	Bos_taurus
ENSOARG00000008509	-	85	83.333	WBGene00003080	lsm-6	86	83.333	Caenorhabditis_elegans
ENSOARG00000008509	-	88	100.000	ENSCJAG00000002482	LSM6	86	100.000	Callithrix_jacchus
ENSOARG00000008509	-	88	100.000	ENSCAFG00000007738	LSM6	86	100.000	Canis_familiaris
ENSOARG00000008509	-	88	100.000	ENSCAFG00020025902	LSM6	86	100.000	Canis_lupus_dingo
ENSOARG00000008509	-	88	100.000	ENSCHIG00000012864	-	97	100.000	Capra_hircus
ENSOARG00000008509	-	88	81.159	ENSCHIG00000024198	-	80	81.159	Capra_hircus
ENSOARG00000008509	-	88	100.000	ENSCHIG00000010334	-	86	100.000	Capra_hircus
ENSOARG00000008509	-	88	100.000	ENSTSYG00000026972	LSM6	86	100.000	Carlito_syrichta
ENSOARG00000008509	-	94	82.192	ENSTSYG00000012759	-	96	82.192	Carlito_syrichta
ENSOARG00000008509	-	83	96.923	ENSCAPG00000011179	-	100	96.923	Cavia_aperea
ENSOARG00000008509	-	88	100.000	ENSCAPG00000008104	LSM6	86	100.000	Cavia_aperea
ENSOARG00000008509	-	88	100.000	ENSCPOG00000032655	LSM6	86	100.000	Cavia_porcellus
ENSOARG00000008509	-	88	100.000	ENSCCAG00000036437	LSM6	86	100.000	Cebus_capucinus
ENSOARG00000008509	-	88	98.551	ENSCCAG00000020665	-	86	98.551	Cebus_capucinus
ENSOARG00000008509	-	78	83.607	ENSCATG00000038799	-	80	83.607	Cercocebus_atys
ENSOARG00000008509	-	88	100.000	ENSCATG00000002770	-	86	100.000	Cercocebus_atys
ENSOARG00000008509	-	88	100.000	ENSCLAG00000005495	LSM6	86	100.000	Chinchilla_lanigera
ENSOARG00000008509	-	88	79.710	ENSCLAG00000005685	-	97	79.710	Chinchilla_lanigera
ENSOARG00000008509	-	88	100.000	ENSCSAG00000003421	LSM6	86	100.000	Chlorocebus_sabaeus
ENSOARG00000008509	-	68	100.000	ENSCHOG00000003420	LSM6	84	100.000	Choloepus_hoffmanni
ENSOARG00000008509	-	88	100.000	ENSCPBG00000027472	LSM6	73	100.000	Chrysemys_picta_bellii
ENSOARG00000008509	-	85	98.485	ENSCING00000019152	-	80	98.485	Ciona_intestinalis
ENSOARG00000008509	-	85	100.000	ENSCSAVG00000002065	-	80	100.000	Ciona_savignyi
ENSOARG00000008509	-	78	81.967	ENSCANG00000035214	-	80	81.967	Colobus_angolensis_palliatus
ENSOARG00000008509	-	88	100.000	ENSCANG00000041263	-	86	100.000	Colobus_angolensis_palliatus
ENSOARG00000008509	-	88	100.000	ENSCANG00000006849	-	86	100.000	Colobus_angolensis_palliatus
ENSOARG00000008509	-	88	100.000	ENSCGRG00001017142	Lsm6	86	100.000	Cricetulus_griseus_chok1gshd
ENSOARG00000008509	-	88	100.000	ENSCGRG00000008320	Lsm6	86	100.000	Cricetulus_griseus_crigri
ENSOARG00000008509	-	88	97.101	ENSCSEG00000000423	lsm6	86	97.101	Cynoglossus_semilaevis
ENSOARG00000008509	-	88	97.101	ENSCVAG00000001592	lsm6	86	97.101	Cyprinodon_variegatus
ENSOARG00000008509	-	88	97.101	ENSDARG00000036995	lsm6	86	97.101	Danio_rerio
ENSOARG00000008509	-	91	100.000	ENSDNOG00000040186	-	76	100.000	Dasypus_novemcinctus
ENSOARG00000008509	-	88	98.551	ENSDNOG00000044848	-	86	98.551	Dasypus_novemcinctus
ENSOARG00000008509	-	88	100.000	ENSDORG00000000933	Lsm6	86	100.000	Dipodomys_ordii
ENSOARG00000008509	-	85	84.848	FBgn0034564	CG9344	84	84.848	Drosophila_melanogaster
ENSOARG00000008509	-	88	100.000	ENSEBUG00000017073	lsm6	86	100.000	Eptatretus_burgeri
ENSOARG00000008509	-	99	98.701	ENSEASG00005001533	LSM6	80	98.701	Equus_asinus_asinus
ENSOARG00000008509	-	88	100.000	ENSECAG00000021036	LSM6	86	100.000	Equus_caballus
ENSOARG00000008509	-	87	67.647	ENSEEUG00000002101	LSM6	86	67.647	Erinaceus_europaeus
ENSOARG00000008509	-	88	97.101	ENSELUG00000014301	LSM6	86	97.101	Esox_lucius
ENSOARG00000008509	-	88	100.000	ENSFCAG00000003047	LSM6	86	100.000	Felis_catus
ENSOARG00000008509	-	88	100.000	ENSFALG00000005509	LSM6	79	100.000	Ficedula_albicollis
ENSOARG00000008509	-	88	100.000	ENSFDAG00000020913	-	86	100.000	Fukomys_damarensis
ENSOARG00000008509	-	88	88.406	ENSFDAG00000019073	-	86	88.406	Fukomys_damarensis
ENSOARG00000008509	-	90	97.143	ENSFHEG00000007948	lsm6	93	97.143	Fundulus_heteroclitus
ENSOARG00000008509	-	88	97.101	ENSGMOG00000015550	lsm6	86	97.101	Gadus_morhua
ENSOARG00000008509	-	88	100.000	ENSGALG00000009985	LSM6	86	100.000	Gallus_gallus
ENSOARG00000008509	-	97	90.789	ENSGAFG00000017763	lsm6	86	97.101	Gambusia_affinis
ENSOARG00000008509	-	88	97.101	ENSGACG00000017223	lsm6	86	97.101	Gasterosteus_aculeatus
ENSOARG00000008509	-	88	100.000	ENSGAGG00000020980	LSM6	86	100.000	Gopherus_agassizii
ENSOARG00000008509	-	88	100.000	ENSGGOG00000001310	LSM6	86	100.000	Gorilla_gorilla
ENSOARG00000008509	-	88	97.101	ENSHBUG00000008618	lsm6	86	97.101	Haplochromis_burtoni
ENSOARG00000008509	-	88	100.000	ENSHGLG00000000205	LSM6	86	100.000	Heterocephalus_glaber_female
ENSOARG00000008509	-	88	100.000	ENSHGLG00100014341	LSM6	86	100.000	Heterocephalus_glaber_male
ENSOARG00000008509	-	88	97.101	ENSHCOG00000005591	lsm6	86	97.101	Hippocampus_comes
ENSOARG00000008509	-	88	95.652	ENSIPUG00000004508	lsm6	86	95.652	Ictalurus_punctatus
ENSOARG00000008509	-	88	100.000	ENSSTOG00000002678	LSM6	86	100.000	Ictidomys_tridecemlineatus
ENSOARG00000008509	-	88	89.855	ENSJJAG00000011211	-	86	89.855	Jaculus_jaculus
ENSOARG00000008509	-	85	75.758	ENSJJAG00000016942	-	82	75.758	Jaculus_jaculus
ENSOARG00000008509	-	88	100.000	ENSJJAG00000013845	-	86	100.000	Jaculus_jaculus
ENSOARG00000008509	-	88	97.101	ENSKMAG00000004105	lsm6	86	97.101	Kryptolebias_marmoratus
ENSOARG00000008509	-	88	97.101	ENSLBEG00000018441	lsm6	86	97.101	Labrus_bergylta
ENSOARG00000008509	-	88	100.000	ENSLACG00000006937	LSM6	86	100.000	Latimeria_chalumnae
ENSOARG00000008509	-	88	97.101	ENSLOCG00000008852	lsm6	86	97.101	Lepisosteus_oculatus
ENSOARG00000008509	-	88	95.652	ENSLOCG00000017683	-	86	95.652	Lepisosteus_oculatus
ENSOARG00000008509	-	88	100.000	ENSLAFG00000001952	LSM6	86	100.000	Loxodonta_africana
ENSOARG00000008509	-	88	100.000	ENSMFAG00000033073	LSM6	86	100.000	Macaca_fascicularis
ENSOARG00000008509	-	78	85.246	ENSMNEG00000040412	-	80	85.246	Macaca_nemestrina
ENSOARG00000008509	-	88	100.000	ENSMNEG00000034820	-	86	100.000	Macaca_nemestrina
ENSOARG00000008509	-	88	100.000	ENSMLEG00000035153	LSM6	86	100.000	Mandrillus_leucophaeus
ENSOARG00000008509	-	88	97.101	ENSMAMG00000014029	lsm6	86	97.101	Mastacembelus_armatus
ENSOARG00000008509	-	88	97.101	ENSMZEG00005009146	lsm6	86	97.101	Maylandia_zebra
ENSOARG00000008509	-	88	100.000	ENSMGAG00000003802	LSM6	86	100.000	Meleagris_gallopavo
ENSOARG00000008509	-	88	100.000	ENSMAUG00000014938	Lsm6	86	100.000	Mesocricetus_auratus
ENSOARG00000008509	-	88	98.551	ENSMICG00000047411	-	81	98.551	Microcebus_murinus
ENSOARG00000008509	-	88	100.000	ENSMICG00000042599	LSM6	86	100.000	Microcebus_murinus
ENSOARG00000008509	-	88	100.000	ENSMOCG00000020049	Lsm6	86	100.000	Microtus_ochrogaster
ENSOARG00000008509	-	88	97.101	ENSMMOG00000005470	lsm6	86	97.101	Mola_mola
ENSOARG00000008509	-	88	92.754	ENSMMOG00000007379	-	87	92.754	Mola_mola
ENSOARG00000008509	-	88	100.000	ENSMODG00000000526	LSM6	86	100.000	Monodelphis_domestica
ENSOARG00000008509	-	88	97.101	ENSMALG00000002419	lsm6	86	97.101	Monopterus_albus
ENSOARG00000008509	-	88	100.000	MGP_CAROLIEiJ_G0031245	Lsm6	86	100.000	Mus_caroli
ENSOARG00000008509	-	88	100.000	ENSMUSG00000031683	Lsm6	86	100.000	Mus_musculus
ENSOARG00000008509	-	88	100.000	MGP_PahariEiJ_G0022851	Lsm6	86	100.000	Mus_pahari
ENSOARG00000008509	-	88	100.000	MGP_SPRETEiJ_G0032365	Lsm6	86	100.000	Mus_spretus
ENSOARG00000008509	-	88	100.000	ENSMPUG00000006936	LSM6	80	100.000	Mustela_putorius_furo
ENSOARG00000008509	-	88	100.000	ENSMLUG00000026355	LSM6	86	100.000	Myotis_lucifugus
ENSOARG00000008509	-	88	100.000	ENSNGAG00000019116	Lsm6	86	100.000	Nannospalax_galili
ENSOARG00000008509	-	92	94.444	ENSNBRG00000004887	lsm6	86	97.101	Neolamprologus_brichardi
ENSOARG00000008509	-	88	100.000	ENSNLEG00000005584	LSM6	86	100.000	Nomascus_leucogenys
ENSOARG00000008509	-	88	100.000	ENSOPRG00000011199	LSM6	87	100.000	Ochotona_princeps
ENSOARG00000008509	-	88	88.406	ENSODEG00000018684	-	90	88.406	Octodon_degus
ENSOARG00000008509	-	88	97.101	ENSODEG00000020420	-	86	97.101	Octodon_degus
ENSOARG00000008509	-	88	98.551	ENSODEG00000002307	-	86	98.551	Octodon_degus
ENSOARG00000008509	-	88	98.551	ENSODEG00000019419	-	86	98.551	Octodon_degus
ENSOARG00000008509	-	88	97.101	ENSONIG00000010005	lsm6	86	97.101	Oreochromis_niloticus
ENSOARG00000008509	-	86	70.149	ENSOANG00000006895	-	86	70.149	Ornithorhynchus_anatinus
ENSOARG00000008509	-	86	70.149	ENSOANG00000006894	-	86	70.149	Ornithorhynchus_anatinus
ENSOARG00000008509	-	88	95.652	ENSORLG00000024158	lsm6	86	95.652	Oryzias_latipes
ENSOARG00000008509	-	90	95.714	ENSORLG00020017383	lsm6	86	95.714	Oryzias_latipes_hni
ENSOARG00000008509	-	88	95.652	ENSORLG00015016903	lsm6	86	95.652	Oryzias_latipes_hsok
ENSOARG00000008509	-	88	97.101	ENSOMEG00000000074	lsm6	86	97.101	Oryzias_melastigma
ENSOARG00000008509	-	88	100.000	ENSOGAG00000033153	-	86	100.000	Otolemur_garnettii
ENSOARG00000008509	-	88	100.000	ENSOGAG00000026665	-	86	100.000	Otolemur_garnettii
ENSOARG00000008509	-	88	100.000	ENSPPAG00000037929	LSM6	86	100.000	Pan_paniscus
ENSOARG00000008509	-	88	100.000	ENSPPRG00000012806	LSM6	86	100.000	Panthera_pardus
ENSOARG00000008509	-	88	100.000	ENSPTIG00000019769	LSM6	86	100.000	Panthera_tigris_altaica
ENSOARG00000008509	-	88	100.000	ENSPTRG00000016488	LSM6	86	100.000	Pan_troglodytes
ENSOARG00000008509	-	88	100.000	ENSPANG00000006552	LSM6	86	100.000	Papio_anubis
ENSOARG00000008509	-	88	97.101	ENSPKIG00000016176	lsm6	86	97.101	Paramormyrops_kingsleyae
ENSOARG00000008509	-	88	100.000	ENSPSIG00000016942	LSM6	86	100.000	Pelodiscus_sinensis
ENSOARG00000008509	-	88	97.101	ENSPMGG00000018004	lsm6	86	97.101	Periophthalmus_magnuspinnatus
ENSOARG00000008509	-	88	100.000	ENSPEMG00000012410	Lsm6	86	100.000	Peromyscus_maniculatus_bairdii
ENSOARG00000008509	-	88	100.000	ENSPMAG00000006949	lsm6	86	100.000	Petromyzon_marinus
ENSOARG00000008509	-	91	100.000	ENSPCIG00000023469	LSM6	83	100.000	Phascolarctos_cinereus
ENSOARG00000008509	-	88	97.101	ENSPFOG00000008881	lsm6	86	97.101	Poecilia_formosa
ENSOARG00000008509	-	88	97.101	ENSPLAG00000003202	lsm6	86	97.101	Poecilia_latipinna
ENSOARG00000008509	-	88	97.101	ENSPMEG00000004000	lsm6	86	97.101	Poecilia_mexicana
ENSOARG00000008509	-	88	97.101	ENSPREG00000023235	lsm6	86	97.101	Poecilia_reticulata
ENSOARG00000008509	-	88	100.000	ENSPPYG00000015105	LSM6	86	100.000	Pongo_abelii
ENSOARG00000008509	-	88	100.000	ENSPCOG00000013899	LSM6	86	100.000	Propithecus_coquereli
ENSOARG00000008509	-	90	97.143	ENSPNYG00000012614	lsm6	86	97.143	Pundamilia_nyererei
ENSOARG00000008509	-	88	97.101	ENSPNAG00000018779	lsm6	86	97.101	Pygocentrus_nattereri
ENSOARG00000008509	-	88	100.000	ENSRNOG00000049370	LOC100360750	86	100.000	Rattus_norvegicus
ENSOARG00000008509	-	88	100.000	ENSRNOG00000030374	Lsm6	86	100.000	Rattus_norvegicus
ENSOARG00000008509	-	88	100.000	ENSRBIG00000027878	LSM6	86	100.000	Rhinopithecus_bieti
ENSOARG00000008509	-	88	100.000	ENSRROG00000024868	LSM6	86	100.000	Rhinopithecus_roxellana
ENSOARG00000008509	-	86	40.845	YDR378C	-	81	42.857	Saccharomyces_cerevisiae
ENSOARG00000008509	-	88	100.000	ENSSBOG00000021229	-	86	100.000	Saimiri_boliviensis_boliviensis
ENSOARG00000008509	-	88	71.014	ENSSBOG00000028103	-	84	71.014	Saimiri_boliviensis_boliviensis
ENSOARG00000008509	-	88	97.101	ENSSFOG00015016480	lsm6	86	97.101	Scleropages_formosus
ENSOARG00000008509	-	88	97.101	ENSSMAG00000004550	lsm6	90	97.101	Scophthalmus_maximus
ENSOARG00000008509	-	90	97.143	ENSSLDG00000004136	-	60	97.143	Seriola_lalandi_dorsalis
ENSOARG00000008509	-	88	97.101	ENSSLDG00000020533	lsm6	72	97.101	Seriola_lalandi_dorsalis
ENSOARG00000008509	-	88	100.000	ENSSPUG00000008657	LSM6	86	100.000	Sphenodon_punctatus
ENSOARG00000008509	-	88	97.101	ENSSPAG00000003246	lsm6	86	97.101	Stegastes_partitus
ENSOARG00000008509	-	88	100.000	ENSSSCG00000035973	LSM6	86	100.000	Sus_scrofa
ENSOARG00000008509	-	88	100.000	ENSTGUG00000002663	LSM6	86	100.000	Taeniopygia_guttata
ENSOARG00000008509	-	88	97.101	ENSTRUG00000023398	lsm6	86	97.101	Takifugu_rubripes
ENSOARG00000008509	-	88	97.101	ENSTNIG00000017725	lsm6	86	97.101	Tetraodon_nigroviridis
ENSOARG00000008509	-	88	100.000	ENSTTRG00000004609	LSM6	86	100.000	Tursiops_truncatus
ENSOARG00000008509	-	99	96.104	ENSUAMG00000014213	LSM6	63	96.104	Ursus_americanus
ENSOARG00000008509	-	99	96.104	ENSUMAG00000015727	LSM6	63	96.104	Ursus_maritimus
ENSOARG00000008509	-	88	100.000	ENSVPAG00000006922	LSM6	86	100.000	Vicugna_pacos
ENSOARG00000008509	-	88	100.000	ENSVVUG00000009254	LSM6	59	100.000	Vulpes_vulpes
ENSOARG00000008509	-	88	100.000	ENSXETG00000023683	lsm6	86	100.000	Xenopus_tropicalis
ENSOARG00000008509	-	90	97.143	ENSXMAG00000009606	lsm6	91	97.143	Xiphophorus_maculatus