EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000010260 (Gene tree)
Gene ID: 101113468
Gene Symbol: PABPC5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Minus strand
Length: 1149 bases
Position: chrX:135115101-135116249
Accession: 101113468
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000011002	RRM_5	PF13893.6	1.7e-11	1	2
ENSOARP00000011002	RRM_5	PF13893.6	1.7e-11	2	2
ENSOARP00000011002	RRM_1	PF00076.22	2e-78	1	4
ENSOARP00000011002	RRM_1	PF00076.22	2e-78	2	4
ENSOARP00000011002	RRM_1	PF00076.22	2e-78	3	4
ENSOARP00000011002	RRM_1	PF00076.22	2e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000011162	PABPC5-201	1149	XM_004022513	ENSOARP00000011002	382 (aa)	XP_004022562	W5PKM9

Gene Model

Click here to download ENSOARG00000010260's gene model file

Pathways

Pathway ID	Pathway Name	Source
oas03013	RNA transport	KEGG
oas03015	mRNA surveillance pathway	KEGG
oas03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000010260's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000010260	PABPC5	94	65.033	ENSOARG00000000095	PABPC1	55	65.033
ENSOARG00000010260	PABPC5	95	66.942	ENSOARG00000020060	PABPC4	56	67.135
ENSOARG00000010260	PABPC5	96	60.331	ENSOARG00000004578	PABPC1L	60	60.393
ENSOARG00000010260	PABPC5	93	58.163	ENSOARG00000005943	-	98	57.812
ENSOARG00000010260	PABPC5	70	34.483	ENSOARG00000018919	-	50	34.524
ENSOARG00000010260	PABPC5	94	35.802	ENSOARG00000014465	ELAVL2	86	35.802

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000010260	PABPC5	99	97.113	ENSG00000174740	PABPC5	99	97.113	Homo_sapiens
ENSOARG00000010260	PABPC5	99	97.113	ENSAMEG00000020114	PABPC5	100	97.113	Ailuropoda_melanoleuca
ENSOARG00000010260	PABPC5	99	97.113	ENSANAG00000005063	PABPC5	99	97.113	Aotus_nancymaae
ENSOARG00000010260	PABPC5	100	98.691	ENSBTAG00000019942	PABPC5	100	98.691	Bos_taurus
ENSOARG00000010260	PABPC5	99	96.588	ENSCJAG00000003665	PABPC5	99	96.588	Callithrix_jacchus
ENSOARG00000010260	PABPC5	100	96.597	ENSCAFG00000017452	PABPC5	100	96.597	Canis_familiaris
ENSOARG00000010260	PABPC5	100	99.738	ENSCHIG00000019004	PABPC5	100	99.738	Capra_hircus
ENSOARG00000010260	PABPC5	100	96.597	ENSTSYG00000036351	PABPC5	100	96.597	Carlito_syrichta
ENSOARG00000010260	PABPC5	99	87.435	ENSCAPG00000010714	PABPC5	100	87.435	Cavia_aperea
ENSOARG00000010260	PABPC5	100	93.455	ENSCPOG00000002555	PABPC5	100	93.455	Cavia_porcellus
ENSOARG00000010260	PABPC5	99	97.113	ENSCCAG00000032154	PABPC5	99	97.113	Cebus_capucinus
ENSOARG00000010260	PABPC5	99	96.850	ENSCATG00000043083	PABPC5	99	96.850	Cercocebus_atys
ENSOARG00000010260	PABPC5	100	94.764	ENSCLAG00000000647	PABPC5	100	94.764	Chinchilla_lanigera
ENSOARG00000010260	PABPC5	99	96.850	ENSCSAG00000000065	PABPC5	99	96.850	Chlorocebus_sabaeus
ENSOARG00000010260	PABPC5	99	96.850	ENSCANG00000011473	PABPC5	99	96.850	Colobus_angolensis_palliatus
ENSOARG00000010260	PABPC5	100	93.455	ENSCGRG00000018699	Pabpc5	100	93.455	Cricetulus_griseus_crigri
ENSOARG00000010260	PABPC5	100	78.329	ENSETEG00000011832	PABPC5	100	78.329	Echinops_telfairi
ENSOARG00000010260	PABPC5	100	97.382	ENSEASG00005014396	PABPC5	100	97.382	Equus_asinus_asinus
ENSOARG00000010260	PABPC5	100	97.382	ENSECAG00000003452	PABPC5	100	97.382	Equus_caballus
ENSOARG00000010260	PABPC5	100	96.859	ENSFCAG00000004998	PABPC5	100	96.859	Felis_catus
ENSOARG00000010260	PABPC5	100	95.812	ENSFDAG00000000126	PABPC5	100	95.812	Fukomys_damarensis
ENSOARG00000010260	PABPC5	99	97.113	ENSGGOG00000007622	PABPC5	99	97.113	Gorilla_gorilla
ENSOARG00000010260	PABPC5	95	96.330	ENSJJAG00000011960	Pabpc5	100	96.330	Jaculus_jaculus
ENSOARG00000010260	PABPC5	99	96.850	ENSMFAG00000024561	PABPC5	99	96.850	Macaca_fascicularis
ENSOARG00000010260	PABPC5	99	96.850	ENSMMUG00000011562	PABPC5	99	96.850	Macaca_mulatta
ENSOARG00000010260	PABPC5	99	96.850	ENSMNEG00000037604	PABPC5	99	96.850	Macaca_nemestrina
ENSOARG00000010260	PABPC5	99	96.850	ENSMLEG00000028318	PABPC5	99	96.850	Mandrillus_leucophaeus
ENSOARG00000010260	PABPC5	100	95.812	ENSMICG00000041706	PABPC5	100	95.812	Microcebus_murinus
ENSOARG00000010260	PABPC5	100	95.550	ENSMOCG00000001554	Pabpc5	100	95.550	Microtus_ochrogaster
ENSOARG00000010260	PABPC5	99	93.421	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.421	Mus_caroli
ENSOARG00000010260	PABPC5	99	93.947	ENSMUSG00000034732	Pabpc5	99	93.947	Mus_musculus
ENSOARG00000010260	PABPC5	100	94.241	MGP_PahariEiJ_G0031908	Pabpc5	100	94.241	Mus_pahari
ENSOARG00000010260	PABPC5	99	93.947	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.947	Mus_spretus
ENSOARG00000010260	PABPC5	100	96.073	ENSMPUG00000018465	PABPC5	100	96.073	Mustela_putorius_furo
ENSOARG00000010260	PABPC5	100	95.550	ENSMLUG00000008244	PABPC5	100	95.550	Myotis_lucifugus
ENSOARG00000010260	PABPC5	95	95.413	ENSNGAG00000004371	Pabpc5	100	95.413	Nannospalax_galili
ENSOARG00000010260	PABPC5	99	97.113	ENSNLEG00000035086	PABPC5	99	97.113	Nomascus_leucogenys
ENSOARG00000010260	PABPC5	99	97.738	ENSOPRG00000000856	PABPC5	100	97.738	Ochotona_princeps
ENSOARG00000010260	PABPC5	100	96.859	ENSOCUG00000010919	PABPC5	100	96.859	Oryctolagus_cuniculus
ENSOARG00000010260	PABPC5	100	95.812	ENSOGAG00000006882	PABPC5	100	95.812	Otolemur_garnettii
ENSOARG00000010260	PABPC5	99	96.850	ENSPPAG00000007378	PABPC5	99	96.850	Pan_paniscus
ENSOARG00000010260	PABPC5	100	96.859	ENSPPRG00000010742	PABPC5	100	96.859	Panthera_pardus
ENSOARG00000010260	PABPC5	100	96.859	ENSPTIG00000001480	PABPC5	100	96.859	Panthera_tigris_altaica
ENSOARG00000010260	PABPC5	99	97.113	ENSPTRG00000022078	PABPC5	99	97.113	Pan_troglodytes
ENSOARG00000010260	PABPC5	99	96.850	ENSPANG00000018282	PABPC5	99	96.850	Papio_anubis
ENSOARG00000010260	PABPC5	100	94.241	ENSPEMG00000000171	Pabpc5	100	94.241	Peromyscus_maniculatus_bairdii
ENSOARG00000010260	PABPC5	99	97.113	ENSPPYG00000020526	PABPC5	99	97.113	Pongo_abelii
ENSOARG00000010260	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSOARG00000010260	PABPC5	100	96.597	ENSPCOG00000000676	PABPC5	100	96.597	Propithecus_coquereli
ENSOARG00000010260	PABPC5	100	97.120	ENSPVAG00000006465	PABPC5	100	97.120	Pteropus_vampyrus
ENSOARG00000010260	PABPC5	100	94.241	ENSRNOG00000003354	Pabpc5	100	94.241	Rattus_norvegicus
ENSOARG00000010260	PABPC5	99	96.850	ENSRBIG00000011760	PABPC5	99	96.850	Rhinopithecus_bieti
ENSOARG00000010260	PABPC5	99	96.850	ENSRROG00000036708	PABPC5	99	96.850	Rhinopithecus_roxellana
ENSOARG00000010260	PABPC5	99	97.113	ENSSBOG00000008658	PABPC5	99	97.113	Saimiri_boliviensis_boliviensis
ENSOARG00000010260	PABPC5	100	94.241	ENSSARG00000014012	PABPC5	100	94.241	Sorex_araneus
ENSOARG00000010260	PABPC5	100	97.120	ENSSSCG00000040194	PABPC5	100	97.120	Sus_scrofa
ENSOARG00000010260	PABPC5	100	97.382	ENSTBEG00000016482	PABPC5	100	97.382	Tupaia_belangeri
ENSOARG00000010260	PABPC5	100	96.597	ENSUAMG00000013627	PABPC5	100	96.597	Ursus_americanus
ENSOARG00000010260	PABPC5	100	96.335	ENSUMAG00000023934	PABPC5	100	96.335	Ursus_maritimus
ENSOARG00000010260	PABPC5	100	97.382	ENSVPAG00000001063	PABPC5	100	97.382	Vicugna_pacos
ENSOARG00000010260	PABPC5	100	96.859	ENSVVUG00000013172	PABPC5	100	96.859	Vulpes_vulpes