EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000012553 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Plus strand
Length: 27927 bases
Position: chr5:4629890-4657816
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000013454	LSM	PF01423.22	7.5e-17	1	1
ENSOARP00000013453	LSM	PF01423.22	7.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000013651	LSM4-201	2087	-	ENSOARP00000013453	127 (aa)	-	W5PSM4
ENSOART00000013652	LSM4-202	713	-	ENSOARP00000013454	145 (aa)	-	W5PSM5

Gene Model

Click here to download ENSOARG00000012553's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000012553's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000012553	LSM4	50	34.722	ENSOARG00000013984	SNRPD3	56	34.722
ENSOARG00000012553	LSM4	65	32.558	ENSOARG00000004575	LSM2	79	34.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000012553	LSM4	94	100.000	ENSG00000130520	LSM4	95	100.000	Homo_sapiens
ENSOARG00000012553	LSM4	96	72.059	ENSAPOG00000005643	lsm4	87	70.229	Acanthochromis_polyacanthus
ENSOARG00000012553	LSM4	94	100.000	ENSAMEG00000011162	LSM4	82	100.000	Ailuropoda_melanoleuca
ENSOARG00000012553	LSM4	96	76.562	ENSAOCG00000006414	lsm4	86	74.219	Amphiprion_ocellaris
ENSOARG00000012553	LSM4	96	73.643	ENSAPEG00000006238	lsm4	87	73.643	Amphiprion_percula
ENSOARG00000012553	LSM4	68	96.939	ENSATEG00000016559	lsm4	57	98.851	Anabas_testudineus
ENSOARG00000012553	LSM4	94	100.000	ENSANAG00000034659	LSM4	95	100.000	Aotus_nancymaae
ENSOARG00000012553	LSM4	95	71.111	ENSACLG00000022738	lsm4	59	98.851	Astatotilapia_calliptera
ENSOARG00000012553	LSM4	94	83.212	ENSAMXG00000016932	lsm4	85	83.471	Astyanax_mexicanus
ENSOARG00000012553	LSM4	94	100.000	ENSBTAG00000008578	LSM4	86	100.000	Bos_taurus
ENSOARG00000012553	LSM4	57	76.829	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSOARG00000012553	LSM4	94	100.000	ENSCJAG00000014171	LSM4	95	100.000	Callithrix_jacchus
ENSOARG00000012553	LSM4	94	100.000	ENSCAFG00000014900	LSM4	78	100.000	Canis_familiaris
ENSOARG00000012553	LSM4	94	100.000	ENSCAFG00020012137	LSM4	86	100.000	Canis_lupus_dingo
ENSOARG00000012553	LSM4	94	100.000	ENSCHIG00000010928	LSM4	79	100.000	Capra_hircus
ENSOARG00000012553	LSM4	94	99.160	ENSTSYG00000030906	LSM4	95	99.160	Carlito_syrichta
ENSOARG00000012553	LSM4	94	98.319	ENSCAPG00000014140	LSM4	95	96.970	Cavia_aperea
ENSOARG00000012553	LSM4	94	98.319	ENSCPOG00000024117	LSM4	95	96.970	Cavia_porcellus
ENSOARG00000012553	LSM4	94	100.000	ENSCCAG00000036308	LSM4	95	100.000	Cebus_capucinus
ENSOARG00000012553	LSM4	94	100.000	ENSCATG00000029311	LSM4	95	100.000	Cercocebus_atys
ENSOARG00000012553	LSM4	94	95.798	ENSCLAG00000010828	LSM4	86	95.798	Chinchilla_lanigera
ENSOARG00000012553	LSM4	94	100.000	ENSCSAG00000005370	LSM4	86	100.000	Chlorocebus_sabaeus
ENSOARG00000012553	LSM4	94	80.672	ENSCPBG00000012925	LSM4	63	98.851	Chrysemys_picta_bellii
ENSOARG00000012553	LSM4	59	91.765	ENSCING00000007519	-	69	91.954	Ciona_intestinalis
ENSOARG00000012553	LSM4	59	92.941	ENSCSAVG00000008596	-	70	93.103	Ciona_savignyi
ENSOARG00000012553	LSM4	94	100.000	ENSCANG00000043686	LSM4	95	100.000	Colobus_angolensis_palliatus
ENSOARG00000012553	LSM4	60	96.552	ENSCGRG00001014436	Lsm4	62	96.552	Cricetulus_griseus_chok1gshd
ENSOARG00000012553	LSM4	60	96.552	ENSCGRG00000009398	Lsm4	63	96.552	Cricetulus_griseus_crigri
ENSOARG00000012553	LSM4	95	76.033	ENSCSEG00000016127	lsm4	85	76.033	Cynoglossus_semilaevis
ENSOARG00000012553	LSM4	94	76.033	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSOARG00000012553	LSM4	95	76.230	ENSCVAG00000010601	lsm4	61	97.701	Cyprinodon_variegatus
ENSOARG00000012553	LSM4	92	78.261	ENSDARG00000023852	lsm4	61	98.851	Danio_rerio
ENSOARG00000012553	LSM4	94	97.479	ENSDORG00000024225	Lsm4	86	97.479	Dipodomys_ordii
ENSOARG00000012553	LSM4	66	81.250	FBgn0032240	CG17768	56	88.506	Drosophila_melanogaster
ENSOARG00000012553	LSM4	93	98.305	ENSETEG00000007762	-	95	98.305	Echinops_telfairi
ENSOARG00000012553	LSM4	72	70.476	ENSEBUG00000003639	-	64	70.476	Eptatretus_burgeri
ENSOARG00000012553	LSM4	94	82.645	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSOARG00000012553	LSM4	94	100.000	ENSFCAG00000040580	LSM4	95	100.000	Felis_catus
ENSOARG00000012553	LSM4	94	79.832	ENSFALG00000009478	LSM4	63	98.851	Ficedula_albicollis
ENSOARG00000012553	LSM4	94	96.639	ENSFDAG00000010124	LSM4	86	96.639	Fukomys_damarensis
ENSOARG00000012553	LSM4	66	96.875	ENSGMOG00000007729	lsm4	59	98.851	Gadus_morhua
ENSOARG00000012553	LSM4	94	79.832	ENSGALG00000003385	LSM4	63	98.851	Gallus_gallus
ENSOARG00000012553	LSM4	75	82.927	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSOARG00000012553	LSM4	65	97.872	ENSGACG00000008140	lsm4	58	98.851	Gasterosteus_aculeatus
ENSOARG00000012553	LSM4	94	80.672	ENSGAGG00000017812	LSM4	63	98.851	Gopherus_agassizii
ENSOARG00000012553	LSM4	94	100.000	ENSGGOG00000012914	-	95	100.000	Gorilla_gorilla
ENSOARG00000012553	LSM4	94	96.639	ENSHGLG00000006568	LSM4	86	96.639	Heterocephalus_glaber_female
ENSOARG00000012553	LSM4	63	100.000	ENSHGLG00100007894	LSM4	99	100.000	Heterocephalus_glaber_male
ENSOARG00000012553	LSM4	95	76.033	ENSHCOG00000008819	lsm4	61	98.851	Hippocampus_comes
ENSOARG00000012553	LSM4	95	79.508	ENSIPUG00000005368	Lsm4	61	98.851	Ictalurus_punctatus
ENSOARG00000012553	LSM4	94	100.000	ENSSTOG00000016494	LSM4	86	100.000	Ictidomys_tridecemlineatus
ENSOARG00000012553	LSM4	94	96.639	ENSJJAG00000017420	Lsm4	86	96.639	Jaculus_jaculus
ENSOARG00000012553	LSM4	59	97.647	ENSKMAG00000005073	lsm4	60	97.701	Kryptolebias_marmoratus
ENSOARG00000012553	LSM4	68	96.939	ENSLBEG00000027930	lsm4	58	98.851	Labrus_bergylta
ENSOARG00000012553	LSM4	94	81.667	ENSLACG00000015861	LSM4	62	98.851	Latimeria_chalumnae
ENSOARG00000012553	LSM4	91	81.739	ENSLOCG00000002025	lsm4	86	84.426	Lepisosteus_oculatus
ENSOARG00000012553	LSM4	94	98.319	ENSLAFG00000017459	LSM4	86	98.319	Loxodonta_africana
ENSOARG00000012553	LSM4	94	100.000	ENSMFAG00000031194	LSM4	95	100.000	Macaca_fascicularis
ENSOARG00000012553	LSM4	94	100.000	ENSMMUG00000004405	LSM4	95	100.000	Macaca_mulatta
ENSOARG00000012553	LSM4	94	100.000	ENSMNEG00000042899	LSM4	95	100.000	Macaca_nemestrina
ENSOARG00000012553	LSM4	94	100.000	ENSMLEG00000027948	LSM4	95	100.000	Mandrillus_leucophaeus
ENSOARG00000012553	LSM4	95	78.689	ENSMAMG00000006190	lsm4	85	76.033	Mastacembelus_armatus
ENSOARG00000012553	LSM4	95	71.111	ENSMZEG00005016420	lsm4	60	98.851	Maylandia_zebra
ENSOARG00000012553	LSM4	94	81.667	ENSMGAG00000004976	LSM4	63	98.851	Meleagris_gallopavo
ENSOARG00000012553	LSM4	94	99.160	ENSMICG00000000222	LSM4	95	99.160	Microcebus_murinus
ENSOARG00000012553	LSM4	94	95.798	ENSMOCG00000020861	Lsm4	86	95.798	Microtus_ochrogaster
ENSOARG00000012553	LSM4	57	98.630	ENSMODG00000015044	-	59	98.630	Monodelphis_domestica
ENSOARG00000012553	LSM4	95	75.806	ENSMALG00000018159	lsm4	61	97.701	Monopterus_albus
ENSOARG00000012553	LSM4	94	95.798	MGP_CAROLIEiJ_G0031158	Lsm4	86	95.798	Mus_caroli
ENSOARG00000012553	LSM4	94	95.798	ENSMUSG00000031848	Lsm4	99	90.196	Mus_musculus
ENSOARG00000012553	LSM4	94	95.798	MGP_PahariEiJ_G0021623	Lsm4	86	95.798	Mus_pahari
ENSOARG00000012553	LSM4	94	95.798	MGP_SPRETEiJ_G0032276	Lsm4	86	95.798	Mus_spretus
ENSOARG00000012553	LSM4	94	100.000	ENSMPUG00000015589	LSM4	86	100.000	Mustela_putorius_furo
ENSOARG00000012553	LSM4	94	100.000	ENSMLUG00000004010	LSM4	86	100.000	Myotis_lucifugus
ENSOARG00000012553	LSM4	94	95.798	ENSNGAG00000008644	Lsm4	89	95.798	Nannospalax_galili
ENSOARG00000012553	LSM4	68	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSOARG00000012553	LSM4	93	92.373	ENSMEUG00000013229	LSM4	59	95.890	Notamacropus_eugenii
ENSOARG00000012553	LSM4	93	93.220	ENSOPRG00000005575	LSM4	61	98.630	Ochotona_princeps
ENSOARG00000012553	LSM4	94	96.639	ENSODEG00000020549	-	86	96.639	Octodon_degus
ENSOARG00000012553	LSM4	94	68.908	ENSODEG00000011712	-	93	70.455	Octodon_degus
ENSOARG00000012553	LSM4	94	85.714	ENSODEG00000004519	-	63	89.655	Octodon_degus
ENSOARG00000012553	LSM4	95	71.111	ENSONIG00000012724	lsm4	59	98.851	Oreochromis_niloticus
ENSOARG00000012553	LSM4	57	98.630	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSOARG00000012553	LSM4	96	82.787	ENSORLG00000008391	lsm4	60	97.701	Oryzias_latipes
ENSOARG00000012553	LSM4	75	82.927	ENSORLG00020014829	lsm4	60	97.701	Oryzias_latipes_hni
ENSOARG00000012553	LSM4	75	82.114	ENSORLG00015010205	lsm4	60	97.701	Oryzias_latipes_hsok
ENSOARG00000012553	LSM4	75	82.927	ENSOMEG00000003606	lsm4	60	97.701	Oryzias_melastigma
ENSOARG00000012553	LSM4	99	93.007	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSOARG00000012553	LSM4	94	100.000	ENSPPAG00000044045	-	95	100.000	Pan_paniscus
ENSOARG00000012553	LSM4	94	100.000	ENSPPRG00000018264	LSM4	95	100.000	Panthera_pardus
ENSOARG00000012553	LSM4	94	100.000	ENSPTIG00000006306	LSM4	86	100.000	Panthera_tigris_altaica
ENSOARG00000012553	LSM4	94	100.000	ENSPTRG00000031470	LSM4	95	100.000	Pan_troglodytes
ENSOARG00000012553	LSM4	94	100.000	ENSPANG00000014399	LSM4	95	100.000	Papio_anubis
ENSOARG00000012553	LSM4	95	80.992	ENSPKIG00000006154	lsm4	62	98.851	Paramormyrops_kingsleyae
ENSOARG00000012553	LSM4	94	79.832	ENSPSIG00000012358	LSM4	64	98.851	Pelodiscus_sinensis
ENSOARG00000012553	LSM4	94	95.798	ENSPEMG00000001358	Lsm4	86	95.798	Peromyscus_maniculatus_bairdii
ENSOARG00000012553	LSM4	94	81.159	ENSPLAG00000016267	lsm4	61	98.851	Poecilia_latipinna
ENSOARG00000012553	LSM4	94	79.137	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSOARG00000012553	LSM4	94	100.000	ENSPPYG00000009736	LSM4	86	100.000	Pongo_abelii
ENSOARG00000012553	LSM4	93	98.305	ENSPCAG00000008513	LSM4	95	98.305	Procavia_capensis
ENSOARG00000012553	LSM4	94	99.160	ENSPCOG00000019837	LSM4	95	99.160	Propithecus_coquereli
ENSOARG00000012553	LSM4	94	100.000	ENSPVAG00000015383	LSM4	86	100.000	Pteropus_vampyrus
ENSOARG00000012553	LSM4	95	71.111	ENSPNYG00000016794	lsm4	60	98.851	Pundamilia_nyererei
ENSOARG00000012553	LSM4	95	81.967	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSOARG00000012553	LSM4	94	95.798	ENSRNOG00000019572	Lsm4	86	95.798	Rattus_norvegicus
ENSOARG00000012553	LSM4	94	100.000	ENSRBIG00000024717	LSM4	95	100.000	Rhinopithecus_bieti
ENSOARG00000012553	LSM4	94	100.000	ENSRROG00000045706	LSM4	95	100.000	Rhinopithecus_roxellana
ENSOARG00000012553	LSM4	94	100.000	ENSSBOG00000022455	LSM4	95	100.000	Saimiri_boliviensis_boliviensis
ENSOARG00000012553	LSM4	60	98.851	ENSSHAG00000011559	LSM4	63	98.851	Sarcophilus_harrisii
ENSOARG00000012553	LSM4	95	79.339	ENSSFOG00015021067	lsm4	62	98.851	Scleropages_formosus
ENSOARG00000012553	LSM4	68	95.918	ENSSMAG00000021020	lsm4	58	98.851	Scophthalmus_maximus
ENSOARG00000012553	LSM4	68	96.939	ENSSDUG00000009588	lsm4	52	98.851	Seriola_dumerili
ENSOARG00000012553	LSM4	68	96.939	ENSSLDG00000006827	lsm4	52	98.851	Seriola_lalandi_dorsalis
ENSOARG00000012553	LSM4	60	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSOARG00000012553	LSM4	96	72.059	ENSSPAG00000011615	lsm4	87	70.229	Stegastes_partitus
ENSOARG00000012553	LSM4	94	100.000	ENSSSCG00000034314	LSM4	86	100.000	Sus_scrofa
ENSOARG00000012553	LSM4	95	83.065	ENSTRUG00000021737	lsm4	61	96.552	Takifugu_rubripes
ENSOARG00000012553	LSM4	94	80.435	ENSTNIG00000010191	lsm4	60	97.701	Tetraodon_nigroviridis
ENSOARG00000012553	LSM4	94	100.000	ENSUAMG00000000665	LSM4	90	100.000	Ursus_americanus
ENSOARG00000012553	LSM4	94	100.000	ENSUMAG00000009013	LSM4	86	100.000	Ursus_maritimus
ENSOARG00000012553	LSM4	94	100.000	ENSVVUG00000008136	LSM4	61	100.000	Vulpes_vulpes
ENSOARG00000012553	LSM4	68	95.960	ENSXETG00000024933	lsm4	63	97.701	Xenopus_tropicalis