EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000013874 (Gene tree)
Gene ID: 100144762
Gene Symbol: -
Alias: -
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Plus strand
Length: 19680 bases
Position: chr11:26783749-26803428
Accession: 100144762
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000014884	RNA_pol_Rpb1_5	PF04998.17	5.4e-101	1	1
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	1	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	2	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	3	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	4	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	5	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	6	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	7	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	8	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	9	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	10	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	11	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	12	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	13	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	14	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	15	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	16	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	17	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	18	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	19	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	20	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	21	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	22	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	23	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	24	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	25	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	26	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	27	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	28	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	29	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	30	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	31	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	32	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	33	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	34	35
ENSOARP00000014884	RNA_pol_Rpb1_R	PF05001.13	1.5e-18	35	35
ENSOARP00000014884	RNA_pol_Rpb1_4	PF05000.17	3.1e-38	1	1
ENSOARP00000014884	RNA_pol_Rpb1_2	PF00623.20	9.8e-75	1	1
ENSOARP00000014884	RNA_pol_Rpb1_3	PF04983.18	7.3e-50	1	1
ENSOARP00000014884	RNA_pol_Rpb1_1	PF04997.12	4.7e-109	1	1
ENSOARP00000014884	RNA_pol_Rpb1_7	PF04990.12	1.8e-54	1	1
ENSOARP00000014884	RNA_pol_Rpb1_6	PF04992.14	1.2e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000015104	-	5670	XM_004013289	ENSOARP00000014884	1890 (aa)	XP_004013338	W5PWQ1

Gene Model

Click here to download ENSOARG00000013874's gene model file

Pathways

Pathway ID	Pathway Name	Source
oas03020	RNA polymerase	KEGG
oas05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000013874's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000013874	-	68	30.769	ENSOARG00000020601	POLR1A	83	30.769
ENSOARG00000013874	-	77	33.869	ENSOARG00000009656	POLR3A	98	33.668

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000013874	-	85	94.482	ENSAPOG00000006552	polr2a	82	94.475	Acanthochromis_polyacanthus
ENSOARG00000013874	-	100	99.472	ENSAMEG00000016265	-	98	99.472	Ailuropoda_melanoleuca
ENSOARG00000013874	-	90	91.878	ENSACIG00000015982	polr2a	84	92.489	Amphilophus_citrinellus
ENSOARG00000013874	-	91	92.436	ENSAOCG00000004255	polr2a	92	92.427	Amphiprion_ocellaris
ENSOARG00000013874	-	90	91.816	ENSAPEG00000012623	polr2a	91	94.538	Amphiprion_percula
ENSOARG00000013874	-	90	91.692	ENSATEG00000019644	polr2a	91	94.413	Anabas_testudineus
ENSOARG00000013874	-	100	98.148	ENSACAG00000014561	POLR2A	98	98.148	Anolis_carolinensis
ENSOARG00000013874	-	100	99.788	ENSANAG00000020093	-	98	99.788	Aotus_nancymaae
ENSOARG00000013874	-	90	91.569	ENSACLG00000006735	polr2a	89	94.227	Astatotilapia_calliptera
ENSOARG00000013874	-	90	91.940	ENSAMXG00000020046	polr2a	91	94.786	Astyanax_mexicanus
ENSOARG00000013874	-	100	99.788	ENSBTAG00000046765	POLR2A	98	99.788	Bos_taurus
ENSOARG00000013874	-	100	99.312	ENSCAFG00000016532	POLR2A	100	99.721	Canis_familiaris
ENSOARG00000013874	-	100	98.784	ENSCAFG00020007929	-	98	98.784	Canis_lupus_dingo
ENSOARG00000013874	-	100	99.788	ENSCHIG00000027173	-	98	99.788	Capra_hircus
ENSOARG00000013874	-	100	95.549	ENSTSYG00000012803	-	98	97.725	Carlito_syrichta
ENSOARG00000013874	-	97	95.609	ENSCAPG00000001882	-	87	98.543	Cavia_aperea
ENSOARG00000013874	-	99	95.683	ENSCPOG00000014812	-	90	98.571	Cavia_porcellus
ENSOARG00000013874	-	100	99.788	ENSCCAG00000020938	-	98	99.788	Cebus_capucinus
ENSOARG00000013874	-	100	99.735	ENSCATG00000013680	-	98	99.735	Cercocebus_atys
ENSOARG00000013874	-	100	99.630	ENSCLAG00000012196	-	98	99.630	Chinchilla_lanigera
ENSOARG00000013874	-	99	90.746	ENSCSAG00000011644	-	90	90.746	Chlorocebus_sabaeus
ENSOARG00000013874	-	100	95.291	ENSCPBG00000012697	POLR2A	97	95.291	Chrysemys_picta_bellii
ENSOARG00000013874	-	98	76.428	ENSCING00000007884	-	90	76.689	Ciona_intestinalis
ENSOARG00000013874	-	92	83.333	ENSCSAVG00000008334	-	99	80.556	Ciona_savignyi
ENSOARG00000013874	-	100	99.048	ENSCANG00000010622	-	98	99.048	Colobus_angolensis_palliatus
ENSOARG00000013874	-	97	93.423	ENSCGRG00001003538	Polr2a	98	94.229	Cricetulus_griseus_chok1gshd
ENSOARG00000013874	-	100	95.652	ENSCGRG00000012105	Polr2a	99	95.914	Cricetulus_griseus_crigri
ENSOARG00000013874	-	90	91.073	ENSCSEG00000002635	polr2a	91	93.793	Cynoglossus_semilaevis
ENSOARG00000013874	-	100	94.668	ENSCVAG00000005156	polr2a	91	94.662	Cyprinodon_variegatus
ENSOARG00000013874	-	99	94.486	ENSDARG00000099966	polr2a	91	94.479	Danio_rerio
ENSOARG00000013874	-	100	96.667	ENSDNOG00000016482	-	98	96.667	Dasypus_novemcinctus
ENSOARG00000013874	-	100	99.788	ENSDORG00000008667	Polr2a	98	99.788	Dipodomys_ordii
ENSOARG00000013874	-	94	88.304	ENSETEG00000002540	-	93	88.304	Echinops_telfairi
ENSOARG00000013874	-	85	88.022	ENSEBUG00000013967	polr2a	83	87.607	Eptatretus_burgeri
ENSOARG00000013874	-	100	97.989	ENSEASG00005019114	-	99	97.989	Equus_asinus_asinus
ENSOARG00000013874	-	100	99.735	ENSECAG00000018485	POLR2A	98	99.735	Equus_caballus
ENSOARG00000013874	-	90	99.800	ENSEEUG00000001154	-	95	99.800	Erinaceus_europaeus
ENSOARG00000013874	-	94	90.018	ENSELUG00000014284	polr2a	86	90.685	Esox_lucius
ENSOARG00000013874	-	100	99.735	ENSFDAG00000008287	-	98	99.735	Fukomys_damarensis
ENSOARG00000013874	-	85	94.668	ENSFHEG00000001768	polr2a	89	94.662	Fundulus_heteroclitus
ENSOARG00000013874	-	99	90.361	ENSGMOG00000007725	polr2a	99	90.418	Gadus_morhua
ENSOARG00000013874	-	100	89.934	ENSGAFG00000005389	polr2a	99	92.427	Gambusia_affinis
ENSOARG00000013874	-	99	90.750	ENSGACG00000019366	polr2a	99	88.249	Gasterosteus_aculeatus
ENSOARG00000013874	-	100	97.888	ENSGGOG00000014800	-	98	97.888	Gorilla_gorilla
ENSOARG00000013874	-	85	94.234	ENSHBUG00000018937	polr2a	92	94.227	Haplochromis_burtoni
ENSOARG00000013874	-	100	99.735	ENSHGLG00000012381	POLR2A	98	99.735	Heterocephalus_glaber_female
ENSOARG00000013874	-	100	99.735	ENSHGLG00100014843	POLR2A	98	99.735	Heterocephalus_glaber_male
ENSOARG00000013874	-	100	93.924	ENSHCOG00000011874	polr2a	91	93.917	Hippocampus_comes
ENSOARG00000013874	-	90	91.321	ENSIPUG00000002613	Polr2a	91	94.165	Ictalurus_punctatus
ENSOARG00000013874	-	100	99.788	ENSSTOG00000001304	-	98	99.788	Ictidomys_tridecemlineatus
ENSOARG00000013874	-	100	99.683	ENSJJAG00000013049	Polr2a	98	99.683	Jaculus_jaculus
ENSOARG00000013874	-	84	85.355	ENSKMAG00000016343	polr2a	85	85.607	Kryptolebias_marmoratus
ENSOARG00000013874	-	90	91.445	ENSLBEG00000027652	polr2a	91	94.165	Labrus_bergylta
ENSOARG00000013874	-	98	87.097	ENSLACG00000012071	POLR2A	90	87.152	Latimeria_chalumnae
ENSOARG00000013874	-	94	93.951	ENSLOCG00000013863	polr2a	86	94.534	Lepisosteus_oculatus
ENSOARG00000013874	-	100	99.735	ENSLAFG00000008626	-	98	99.735	Loxodonta_africana
ENSOARG00000013874	-	52	98.366	ENSMFAG00000007042	-	99	98.366	Macaca_fascicularis
ENSOARG00000013874	-	100	99.735	ENSMMUG00000023620	-	98	99.735	Macaca_mulatta
ENSOARG00000013874	-	100	98.998	ENSMNEG00000040407	-	99	98.998	Macaca_nemestrina
ENSOARG00000013874	-	99	94.600	ENSMLEG00000030263	-	99	98.366	Mandrillus_leucophaeus
ENSOARG00000013874	-	85	94.296	ENSMAMG00000003351	polr2a	91	94.289	Mastacembelus_armatus
ENSOARG00000013874	-	90	90.639	ENSMZEG00005021429	polr2a	89	94.227	Maylandia_zebra
ENSOARG00000013874	-	52	100.000	ENSMAUG00000021055	-	99	100.000	Mesocricetus_auratus
ENSOARG00000013874	-	100	99.683	ENSMICG00000013372	-	98	99.683	Microcebus_murinus
ENSOARG00000013874	-	100	91.385	ENSMOCG00000018279	Polr2a	98	92.949	Microtus_ochrogaster
ENSOARG00000013874	-	85	93.800	ENSMMOG00000012515	polr2a	82	93.793	Mola_mola
ENSOARG00000013874	-	100	99.312	ENSMODG00000007009	-	98	99.312	Monodelphis_domestica
ENSOARG00000013874	-	94	91.708	ENSMALG00000008716	polr2a	86	94.475	Monopterus_albus
ENSOARG00000013874	-	100	99.735	MGP_CAROLIEiJ_G0016587	Polr2a	98	99.735	Mus_caroli
ENSOARG00000013874	-	100	99.735	ENSMUSG00000005198	Polr2a	98	99.735	Mus_musculus
ENSOARG00000013874	-	100	97.891	MGP_PahariEiJ_G0017718	Polr2a	98	97.891	Mus_pahari
ENSOARG00000013874	-	100	99.735	MGP_SPRETEiJ_G0017423	Polr2a	98	99.735	Mus_spretus
ENSOARG00000013874	-	100	99.683	ENSMPUG00000009648	-	98	99.683	Mustela_putorius_furo
ENSOARG00000013874	-	100	99.260	ENSMLUG00000009088	-	98	99.260	Myotis_lucifugus
ENSOARG00000013874	-	100	99.788	ENSNGAG00000002543	Polr2a	98	99.788	Nannospalax_galili
ENSOARG00000013874	-	90	91.631	ENSNBRG00000002005	polr2a	84	92.179	Neolamprologus_brichardi
ENSOARG00000013874	-	100	98.522	ENSNLEG00000009460	-	98	98.522	Nomascus_leucogenys
ENSOARG00000013874	-	93	99.455	ENSMEUG00000008611	-	92	99.455	Notamacropus_eugenii
ENSOARG00000013874	-	84	99.747	ENSOPRG00000015116	-	99	99.747	Ochotona_princeps
ENSOARG00000013874	-	89	99.800	ENSODEG00000017674	-	97	94.709	Octodon_degus
ENSOARG00000013874	-	85	94.420	ENSONIG00000009231	polr2a	89	94.413	Oreochromis_niloticus
ENSOARG00000013874	-	100	97.768	ENSOCUG00000017929	-	100	97.768	Oryctolagus_cuniculus
ENSOARG00000013874	-	100	94.296	ENSORLG00000006431	polr2a	91	94.289	Oryzias_latipes
ENSOARG00000013874	-	100	94.296	ENSORLG00020010235	polr2a	91	94.289	Oryzias_latipes_hni
ENSOARG00000013874	-	100	94.296	ENSORLG00015007075	polr2a	91	94.289	Oryzias_latipes_hsok
ENSOARG00000013874	-	98	94.406	ENSOMEG00000010713	polr2a	100	94.406	Oryzias_melastigma
ENSOARG00000013874	-	100	99.630	ENSOGAG00000033608	-	98	99.630	Otolemur_garnettii
ENSOARG00000013874	-	100	94.928	ENSPPAG00000043734	-	96	97.090	Pan_paniscus
ENSOARG00000013874	-	100	98.522	ENSPTRG00000008691	POLR2A	98	98.522	Pan_troglodytes
ENSOARG00000013874	-	100	99.048	ENSPANG00000024099	-	98	99.048	Papio_anubis
ENSOARG00000013874	-	81	92.793	ENSPKIG00000005727	polr2a	84	84.302	Paramormyrops_kingsleyae
ENSOARG00000013874	-	99	96.478	ENSPSIG00000014006	POLR2A	100	96.478	Pelodiscus_sinensis
ENSOARG00000013874	-	100	94.225	ENSPMGG00000019734	polr2a	99	94.662	Periophthalmus_magnuspinnatus
ENSOARG00000013874	-	100	99.788	ENSPEMG00000012521	Polr2a	98	99.788	Peromyscus_maniculatus_bairdii
ENSOARG00000013874	-	99	87.388	ENSPCIG00000028851	-	97	87.388	Phascolarctos_cinereus
ENSOARG00000013874	-	89	94.606	ENSPFOG00000007890	polr2a	89	94.600	Poecilia_formosa
ENSOARG00000013874	-	89	94.606	ENSPLAG00000007399	polr2a	89	94.600	Poecilia_latipinna
ENSOARG00000013874	-	89	94.606	ENSPMEG00000002071	polr2a	89	94.600	Poecilia_mexicana
ENSOARG00000013874	-	100	94.544	ENSPREG00000013122	polr2a	91	94.538	Poecilia_reticulata
ENSOARG00000013874	-	100	97.269	ENSPPYG00000007924	-	99	98.679	Pongo_abelii
ENSOARG00000013874	-	92	99.868	ENSPCAG00000006951	-	90	99.868	Procavia_capensis
ENSOARG00000013874	-	100	98.530	ENSPCOG00000025260	-	98	98.530	Propithecus_coquereli
ENSOARG00000013874	-	100	99.524	ENSPVAG00000005069	-	98	99.524	Pteropus_vampyrus
ENSOARG00000013874	-	98	94.499	ENSPNYG00000022340	polr2a	89	94.289	Pundamilia_nyererei
ENSOARG00000013874	-	85	94.606	ENSPNAG00000011237	polr2a	89	94.600	Pygocentrus_nattereri
ENSOARG00000013874	-	100	99.735	ENSRNOG00000028834	Polr2a	98	99.735	Rattus_norvegicus
ENSOARG00000013874	-	95	97.145	ENSRBIG00000002471	-	98	95.677	Rhinopithecus_bieti
ENSOARG00000013874	-	100	99.365	ENSRROG00000029583	-	99	99.365	Rhinopithecus_roxellana
ENSOARG00000013874	-	87	88.000	YDL140C	RPO21	98	82.781	Saccharomyces_cerevisiae
ENSOARG00000013874	-	100	99.788	ENSSBOG00000000808	-	98	99.788	Saimiri_boliviensis_boliviensis
ENSOARG00000013874	-	100	96.604	ENSSHAG00000002858	-	96	96.720	Sarcophilus_harrisii
ENSOARG00000013874	-	99	91.754	ENSSFOG00015023275	polr2a	94	94.538	Scleropages_formosus
ENSOARG00000013874	-	85	93.924	ENSSMAG00000009137	polr2a	95	93.917	Scophthalmus_maximus
ENSOARG00000013874	-	90	91.692	ENSSDUG00000020466	polr2a	91	94.413	Seriola_dumerili
ENSOARG00000013874	-	90	91.692	ENSSLDG00000020613	polr2a	91	94.413	Seriola_lalandi_dorsalis
ENSOARG00000013874	-	99	95.036	ENSSARG00000005875	-	99	95.036	Sorex_araneus
ENSOARG00000013874	-	100	94.482	ENSSPAG00000016741	polr2a	93	94.475	Stegastes_partitus
ENSOARG00000013874	-	100	98.995	ENSSSCG00000028278	-	98	98.995	Sus_scrofa
ENSOARG00000013874	-	99	88.600	ENSTRUG00000012320	polr2a	80	88.586	Takifugu_rubripes
ENSOARG00000013874	-	95	92.932	ENSTNIG00000010136	polr2a	97	92.924	Tetraodon_nigroviridis
ENSOARG00000013874	-	73	100.000	ENSTBEG00000013294	-	57	100.000	Tupaia_belangeri
ENSOARG00000013874	-	100	98.148	ENSTTRG00000014273	-	98	98.148	Tursiops_truncatus
ENSOARG00000013874	-	100	96.780	ENSUAMG00000014866	-	99	96.292	Ursus_americanus
ENSOARG00000013874	-	99	96.997	ENSUMAG00000015732	-	98	96.997	Ursus_maritimus
ENSOARG00000013874	-	64	100.000	ENSVPAG00000008842	-	76	100.000	Vicugna_pacos
ENSOARG00000013874	-	100	97.989	ENSVVUG00000027878	-	99	98.254	Vulpes_vulpes
ENSOARG00000013874	-	99	96.681	ENSXETG00000012465	polr2a	98	96.681	Xenopus_tropicalis
ENSOARG00000013874	-	85	92.374	ENSXCOG00000001804	polr2a	88	92.365	Xiphophorus_couchianus
ENSOARG00000013874	-	100	94.544	ENSXMAG00000015687	polr2a	91	94.538	Xiphophorus_maculatus