EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOARG00000015076 (Gene tree)
Gene ID: 101117944
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Minus strand
Length: 203474 bases
Position: chr11:22702822-22906295
Accession: 101117944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000016188	EST1	PF10374.9	2.3e-15	1	1
ENSOARP00000016185	EST1	PF10374.9	2.4e-15	1	1
ENSOARP00000016188	EST1_DNA_bind	PF10373.9	5.6e-61	1	1
ENSOARP00000016185	EST1_DNA_bind	PF10373.9	5.9e-61	1	1
ENSOARP00000016188	PIN_4	PF13638.6	1.1e-21	1	1
ENSOARP00000016185	PIN_4	PF13638.6	1.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000016422	SMG6-202	7586	XM_004012551	ENSOARP00000016188	1380 (aa)	XP_004012600	W5Q0F2
ENSOART00000016419	SMG6-201	7632	-	ENSOARP00000016185	1415 (aa)	-	W5Q0E9

Gene Model

Click here to download ENSOARG00000015076's gene model file

Pathways

Pathway ID	Pathway Name	Source
oas03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000015076's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000015076	SMG6	100	92.058	ENSG00000070366	SMG6	100	97.065	Homo_sapiens
ENSOARG00000015076	SMG6	85	55.344	ENSAPOG00000019448	smg6	74	55.521	Acanthochromis_polyacanthus
ENSOARG00000015076	SMG6	100	94.645	ENSAMEG00000007632	SMG6	100	93.155	Ailuropoda_melanoleuca
ENSOARG00000015076	SMG6	74	60.906	ENSACIG00000012997	smg6	71	61.183	Amphilophus_citrinellus
ENSOARG00000015076	SMG6	88	54.288	ENSAPEG00000019101	smg6	74	55.391	Amphiprion_percula
ENSOARG00000015076	SMG6	83	55.521	ENSATEG00000006483	smg6	73	55.547	Anabas_testudineus
ENSOARG00000015076	SMG6	87	57.899	ENSACAG00000011783	SMG6	97	59.205	Anolis_carolinensis
ENSOARG00000015076	SMG6	100	92.419	ENSANAG00000035760	SMG6	100	90.845	Aotus_nancymaae
ENSOARG00000015076	SMG6	73	59.631	ENSACLG00000005288	smg6	80	55.783	Astatotilapia_calliptera
ENSOARG00000015076	SMG6	70	63.370	ENSAMXG00000017326	smg6	98	51.119	Astyanax_mexicanus
ENSOARG00000015076	SMG6	100	98.696	ENSBTAG00000000267	SMG6	100	97.032	Bos_taurus
ENSOARG00000015076	SMG6	100	92.347	ENSCJAG00000001820	SMG6	100	90.775	Callithrix_jacchus
ENSOARG00000015076	SMG6	100	93.922	ENSCAFG00000019260	SMG6	100	92.449	Canis_familiaris
ENSOARG00000015076	SMG6	100	93.922	ENSCAFG00020009770	SMG6	100	92.449	Canis_lupus_dingo
ENSOARG00000015076	SMG6	100	99.493	ENSCHIG00000021998	SMG6	100	97.880	Capra_hircus
ENSOARG00000015076	SMG6	100	92.058	ENSTSYG00000003406	SMG6	100	97.260	Carlito_syrichta
ENSOARG00000015076	SMG6	100	76.136	ENSCAPG00000016197	SMG6	99	82.436	Cavia_aperea
ENSOARG00000015076	SMG6	100	89.827	ENSCPOG00000014878	SMG6	97	92.982	Cavia_porcellus
ENSOARG00000015076	SMG6	100	92.852	ENSCCAG00000035801	SMG6	100	91.268	Cebus_capucinus
ENSOARG00000015076	SMG6	100	92.635	ENSCATG00000031956	SMG6	100	91.056	Cercocebus_atys
ENSOARG00000015076	SMG6	100	91.697	ENSCLAG00000006748	SMG6	100	91.499	Chinchilla_lanigera
ENSOARG00000015076	SMG6	100	93.069	ENSCSAG00000013800	SMG6	100	91.479	Chlorocebus_sabaeus
ENSOARG00000015076	SMG6	53	98.507	ENSCHOG00000005024	-	66	98.507	Choloepus_hoffmanni
ENSOARG00000015076	SMG6	100	72.701	ENSCPBG00000020369	SMG6	99	71.947	Chrysemys_picta_bellii
ENSOARG00000015076	SMG6	100	92.491	ENSCANG00000031764	SMG6	100	97.065	Colobus_angolensis_palliatus
ENSOARG00000015076	SMG6	54	86.364	ENSCGRG00001019595	Smg6	100	83.780	Cricetulus_griseus_chok1gshd
ENSOARG00000015076	SMG6	100	84.910	ENSCGRG00000007782	Smg6	100	84.870	Cricetulus_griseus_crigri
ENSOARG00000015076	SMG6	88	52.893	ENSCSEG00000012757	smg6	94	49.098	Cynoglossus_semilaevis
ENSOARG00000015076	SMG6	87	53.058	ENSCVAG00000012789	smg6	76	54.011	Cyprinodon_variegatus
ENSOARG00000015076	SMG6	99	50.775	ENSDARG00000100481	smg6	91	51.423	Danio_rerio
ENSOARG00000015076	SMG6	100	92.274	ENSDNOG00000048283	SMG6	100	90.775	Dasypus_novemcinctus
ENSOARG00000015076	SMG6	100	88.497	ENSDORG00000016614	Smg6	94	98.649	Dipodomys_ordii
ENSOARG00000015076	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSOARG00000015076	SMG6	70	50.345	ENSEBUG00000005059	smg6	68	49.020	Eptatretus_burgeri
ENSOARG00000015076	SMG6	99	94.348	ENSEASG00005009318	SMG6	99	92.862	Equus_asinus_asinus
ENSOARG00000015076	SMG6	99	94.058	ENSECAG00000006519	SMG6	99	92.580	Equus_caballus
ENSOARG00000015076	SMG6	100	82.464	ENSEEUG00000003493	SMG6	100	81.201	Erinaceus_europaeus
ENSOARG00000015076	SMG6	73	60.648	ENSELUG00000005934	smg6	67	56.727	Esox_lucius
ENSOARG00000015076	SMG6	100	94.790	ENSFCAG00000028817	SMG6	100	93.296	Felis_catus
ENSOARG00000015076	SMG6	100	72.630	ENSFALG00000006538	SMG6	100	72.546	Ficedula_albicollis
ENSOARG00000015076	SMG6	100	91.480	ENSFDAG00000015106	SMG6	100	89.930	Fukomys_damarensis
ENSOARG00000015076	SMG6	85	53.468	ENSFHEG00000013282	smg6	75	54.092	Fundulus_heteroclitus
ENSOARG00000015076	SMG6	54	69.626	ENSGMOG00000019077	smg6	68	69.626	Gadus_morhua
ENSOARG00000015076	SMG6	100	72.108	ENSGALG00000003108	SMG6	98	71.091	Gallus_gallus
ENSOARG00000015076	SMG6	85	54.239	ENSGAFG00000000379	smg6	74	54.702	Gambusia_affinis
ENSOARG00000015076	SMG6	93	54.195	ENSGACG00000020521	smg6	99	54.213	Gasterosteus_aculeatus
ENSOARG00000015076	SMG6	100	72.559	ENSGAGG00000025617	SMG6	100	72.740	Gopherus_agassizii
ENSOARG00000015076	SMG6	100	92.780	ENSGGOG00000017156	SMG6	100	91.197	Gorilla_gorilla
ENSOARG00000015076	SMG6	85	55.363	ENSHBUG00000021311	smg6	74	55.940	Haplochromis_burtoni
ENSOARG00000015076	SMG6	100	91.348	ENSHGLG00000012882	SMG6	100	89.803	Heterocephalus_glaber_female
ENSOARG00000015076	SMG6	100	91.420	ENSHGLG00100017815	SMG6	100	89.873	Heterocephalus_glaber_male
ENSOARG00000015076	SMG6	79	56.526	ENSHCOG00000008761	smg6	97	54.228	Hippocampus_comes
ENSOARG00000015076	SMG6	85	56.135	ENSIPUG00000012493	smg6	75	55.276	Ictalurus_punctatus
ENSOARG00000015076	SMG6	100	92.708	ENSSTOG00000028127	SMG6	97	95.197	Ictidomys_tridecemlineatus
ENSOARG00000015076	SMG6	78	87.845	ENSJJAG00000015367	Smg6	95	84.142	Jaculus_jaculus
ENSOARG00000015076	SMG6	86	52.817	ENSKMAG00000000279	smg6	78	53.123	Kryptolebias_marmoratus
ENSOARG00000015076	SMG6	87	53.481	ENSLBEG00000002184	smg6	75	53.893	Labrus_bergylta
ENSOARG00000015076	SMG6	56	58.467	ENSLACG00000000806	-	99	59.146	Latimeria_chalumnae
ENSOARG00000015076	SMG6	75	65.482	ENSLOCG00000006448	smg6	99	55.571	Lepisosteus_oculatus
ENSOARG00000015076	SMG6	100	91.769	ENSLAFG00000001261	SMG6	100	90.211	Loxodonta_africana
ENSOARG00000015076	SMG6	100	93.213	ENSMFAG00000003394	SMG6	100	91.620	Macaca_fascicularis
ENSOARG00000015076	SMG6	100	93.141	ENSMMUG00000023161	SMG6	100	91.549	Macaca_mulatta
ENSOARG00000015076	SMG6	100	88.193	ENSMNEG00000044592	SMG6	100	86.728	Macaca_nemestrina
ENSOARG00000015076	SMG6	95	97.180	ENSMLEG00000029353	SMG6	100	97.180	Mandrillus_leucophaeus
ENSOARG00000015076	SMG6	87	55.350	ENSMAMG00000020119	smg6	80	55.427	Mastacembelus_armatus
ENSOARG00000015076	SMG6	73	59.816	ENSMZEG00005024736	smg6	74	55.827	Maylandia_zebra
ENSOARG00000015076	SMG6	73	67.054	ENSMGAG00000005401	-	98	66.731	Meleagris_gallopavo
ENSOARG00000015076	SMG6	100	93.718	ENSMICG00000012913	SMG6	100	92.113	Microcebus_murinus
ENSOARG00000015076	SMG6	89	53.469	ENSMMOG00000010883	smg6	99	48.032	Mola_mola
ENSOARG00000015076	SMG6	100	86.023	ENSMODG00000010622	SMG6	100	84.610	Monodelphis_domestica
ENSOARG00000015076	SMG6	87	54.531	ENSMALG00000001106	smg6	74	55.111	Monopterus_albus
ENSOARG00000015076	SMG6	100	91.191	MGP_CAROLIEiJ_G0016729	Smg6	98	95.677	Mus_caroli
ENSOARG00000015076	SMG6	100	91.047	ENSMUSG00000038290	Smg6	97	95.652	Mus_musculus
ENSOARG00000015076	SMG6	100	90.751	MGP_PahariEiJ_G0017866	Smg6	98	94.813	Mus_pahari
ENSOARG00000015076	SMG6	100	91.047	MGP_SPRETEiJ_G0017572	Smg6	97	95.942	Mus_spretus
ENSOARG00000015076	SMG6	100	94.211	ENSMPUG00000013046	SMG6	100	92.731	Mustela_putorius_furo
ENSOARG00000015076	SMG6	100	93.488	ENSMLUG00000005739	SMG6	100	91.743	Myotis_lucifugus
ENSOARG00000015076	SMG6	100	90.173	ENSNGAG00000007287	Smg6	100	89.914	Nannospalax_galili
ENSOARG00000015076	SMG6	85	54.452	ENSNBRG00000009511	smg6	81	55.197	Neolamprologus_brichardi
ENSOARG00000015076	SMG6	100	92.780	ENSNLEG00000017171	SMG6	100	97.260	Nomascus_leucogenys
ENSOARG00000015076	SMG6	100	82.637	ENSMEUG00000015804	SMG6	100	82.399	Notamacropus_eugenii
ENSOARG00000015076	SMG6	64	90.498	ENSOPRG00000000579	SMG6	85	96.316	Ochotona_princeps
ENSOARG00000015076	SMG6	100	84.715	ENSODEG00000008038	SMG6	100	83.333	Octodon_degus
ENSOARG00000015076	SMG6	99	51.722	ENSONIG00000005594	smg6	99	51.509	Oreochromis_niloticus
ENSOARG00000015076	SMG6	100	91.997	ENSOCUG00000013018	SMG6	100	90.436	Oryctolagus_cuniculus
ENSOARG00000015076	SMG6	86	54.510	ENSORLG00000003317	smg6	75	54.773	Oryzias_latipes
ENSOARG00000015076	SMG6	86	54.481	ENSORLG00020015343	smg6	74	54.503	Oryzias_latipes_hni
ENSOARG00000015076	SMG6	86	54.353	ENSORLG00015020454	smg6	75	54.695	Oryzias_latipes_hsok
ENSOARG00000015076	SMG6	85	53.470	ENSOMEG00000010838	smg6	75	53.949	Oryzias_melastigma
ENSOARG00000015076	SMG6	100	93.074	ENSOGAG00000004483	SMG6	100	91.485	Otolemur_garnettii
ENSOARG00000015076	SMG6	100	92.852	ENSPPAG00000043296	SMG6	100	91.268	Pan_paniscus
ENSOARG00000015076	SMG6	100	94.863	ENSPPRG00000014581	SMG6	100	93.366	Panthera_pardus
ENSOARG00000015076	SMG6	100	94.863	ENSPTIG00000008925	SMG6	100	98.239	Panthera_tigris_altaica
ENSOARG00000015076	SMG6	100	92.780	ENSPTRG00000008544	SMG6	100	97.065	Pan_troglodytes
ENSOARG00000015076	SMG6	100	92.924	ENSPANG00000024588	SMG6	100	91.338	Papio_anubis
ENSOARG00000015076	SMG6	90	70.810	ENSPSIG00000006660	SMG6	96	70.787	Pelodiscus_sinensis
ENSOARG00000015076	SMG6	99	49.966	ENSPMGG00000000844	smg6	99	60.742	Periophthalmus_magnuspinnatus
ENSOARG00000015076	SMG6	100	91.913	ENSPEMG00000020707	Smg6	97	94.248	Peromyscus_maniculatus_bairdii
ENSOARG00000015076	SMG6	99	51.778	ENSPFOG00000012035	smg6	99	51.710	Poecilia_formosa
ENSOARG00000015076	SMG6	85	53.864	ENSPLAG00000017660	smg6	74	54.517	Poecilia_latipinna
ENSOARG00000015076	SMG6	85	53.894	ENSPMEG00000000258	smg6	74	54.753	Poecilia_mexicana
ENSOARG00000015076	SMG6	85	54.360	ENSPREG00000010066	smg6	74	54.524	Poecilia_reticulata
ENSOARG00000015076	SMG6	100	87.320	ENSPPYG00000007790	SMG6	100	85.875	Pongo_abelii
ENSOARG00000015076	SMG6	100	87.942	ENSPCAG00000000552	SMG6	100	86.479	Procavia_capensis
ENSOARG00000015076	SMG6	100	93.357	ENSPCOG00000020925	SMG6	100	91.761	Propithecus_coquereli
ENSOARG00000015076	SMG6	86	90.564	ENSPVAG00000002159	SMG6	84	90.564	Pteropus_vampyrus
ENSOARG00000015076	SMG6	85	55.916	ENSPNYG00000024151	smg6	79	57.805	Pundamilia_nyererei
ENSOARG00000015076	SMG6	89	51.366	ENSPNAG00000015480	smg6	87	63.196	Pygocentrus_nattereri
ENSOARG00000015076	SMG6	100	91.264	ENSRNOG00000003041	Smg6	97	96.254	Rattus_norvegicus
ENSOARG00000015076	SMG6	100	92.347	ENSRBIG00000024746	SMG6	100	90.775	Rhinopithecus_bieti
ENSOARG00000015076	SMG6	100	92.419	ENSRROG00000030423	SMG6	100	96.673	Rhinopithecus_roxellana
ENSOARG00000015076	SMG6	100	92.563	ENSSBOG00000022518	SMG6	100	89.296	Saimiri_boliviensis_boliviensis
ENSOARG00000015076	SMG6	100	85.591	ENSSHAG00000010045	SMG6	98	85.591	Sarcophilus_harrisii
ENSOARG00000015076	SMG6	74	62.605	ENSSFOG00015005436	smg6	70	57.680	Scleropages_formosus
ENSOARG00000015076	SMG6	85	55.616	ENSSMAG00000019777	smg6	73	55.504	Scophthalmus_maximus
ENSOARG00000015076	SMG6	91	53.109	ENSSDUG00000016412	smg6	79	52.830	Seriola_dumerili
ENSOARG00000015076	SMG6	88	52.233	ENSSLDG00000020747	smg6	83	51.877	Seriola_lalandi_dorsalis
ENSOARG00000015076	SMG6	99	70.613	ENSSPUG00000007152	SMG6	99	69.520	Sphenodon_punctatus
ENSOARG00000015076	SMG6	85	54.524	ENSSPAG00000015633	smg6	74	54.945	Stegastes_partitus
ENSOARG00000015076	SMG6	100	95.076	ENSSSCG00000017826	SMG6	99	94.813	Sus_scrofa
ENSOARG00000015076	SMG6	100	72.989	ENSTGUG00000005836	SMG6	100	71.689	Taeniopygia_guttata
ENSOARG00000015076	SMG6	85	55.211	ENSTRUG00000000358	smg6	81	55.751	Takifugu_rubripes
ENSOARG00000015076	SMG6	99	51.085	ENSTNIG00000016164	smg6	99	50.232	Tetraodon_nigroviridis
ENSOARG00000015076	SMG6	100	88.087	ENSTBEG00000011424	SMG6	100	86.408	Tupaia_belangeri
ENSOARG00000015076	SMG6	91	93.030	ENSTTRG00000001175	SMG6	91	93.030	Tursiops_truncatus
ENSOARG00000015076	SMG6	100	94.440	ENSUAMG00000025152	SMG6	100	94.368	Ursus_americanus
ENSOARG00000015076	SMG6	100	94.718	ENSUMAG00000009306	SMG6	100	94.718	Ursus_maritimus
ENSOARG00000015076	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSOARG00000015076	SMG6	100	93.632	ENSVVUG00000021727	SMG6	100	92.167	Vulpes_vulpes
ENSOARG00000015076	SMG6	100	59.517	ENSXETG00000023799	SMG6	99	59.362	Xenopus_tropicalis
ENSOARG00000015076	SMG6	85	55.164	ENSXCOG00000009867	smg6	74	55.351	Xiphophorus_couchianus
ENSOARG00000015076	SMG6	85	54.624	ENSXMAG00000010321	smg6	74	54.930	Xiphophorus_maculatus