EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000016051 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Plus strand
Length: 15348 bases
Position: chrX:109013924-109029271
Accession: 101101868
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000017240	Smg4_UPF3	PF03467.15	3.4e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000017482	-	1461	XM_004022388	ENSOARP00000017240	486 (aa)	XP_004022437	W5Q3F1

Gene Model

Click here to download ENSOARG00000016051's gene model file

Pathways

Pathway ID	Pathway Name	Source
oas03013	RNA transport	KEGG
oas03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000016051's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000016051	-	90	47.020	ENSOARG00000009004	UPF3A	83	44.286
ENSOARG00000016051	-	90	70.159	ENSOARG00000007869	-	99	65.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000016051	-	89	47.204	ENSG00000169062	UPF3A	86	47.204	Homo_sapiens
ENSOARG00000016051	-	100	95.267	ENSG00000125351	UPF3B	100	95.267	Homo_sapiens
ENSOARG00000016051	-	96	55.833	ENSAPOG00000012775	upf3b	96	56.042	Acanthochromis_polyacanthus
ENSOARG00000016051	-	90	43.400	ENSAMEG00000004259	UPF3A	92	42.404	Ailuropoda_melanoleuca
ENSOARG00000016051	-	100	96.502	ENSAMEG00000000163	UPF3B	100	96.502	Ailuropoda_melanoleuca
ENSOARG00000016051	-	94	51.489	ENSACIG00000013582	upf3b	94	54.545	Amphilophus_citrinellus
ENSOARG00000016051	-	96	54.393	ENSAOCG00000000706	upf3b	96	55.000	Amphiprion_ocellaris
ENSOARG00000016051	-	96	53.430	ENSAPEG00000005545	upf3b	96	56.250	Amphiprion_percula
ENSOARG00000016051	-	94	56.531	ENSATEG00000018742	upf3b	96	56.224	Anabas_testudineus
ENSOARG00000016051	-	91	67.627	ENSACAG00000003625	UPF3B	99	64.575	Anolis_carolinensis
ENSOARG00000016051	-	56	70.221	ENSANAG00000033169	-	93	69.485	Aotus_nancymaae
ENSOARG00000016051	-	100	87.243	ENSANAG00000025598	-	100	94.690	Aotus_nancymaae
ENSOARG00000016051	-	100	95.473	ENSANAG00000021894	-	100	96.691	Aotus_nancymaae
ENSOARG00000016051	-	96	55.042	ENSACLG00000001649	upf3b	97	56.159	Astatotilapia_calliptera
ENSOARG00000016051	-	57	59.441	ENSAMXG00000000199	upf3b	88	59.649	Astyanax_mexicanus
ENSOARG00000016051	-	67	98.897	ENSBTAG00000035615	UPF3B	100	98.897	Bos_taurus
ENSOARG00000016051	-	100	95.473	ENSCJAG00000004975	UPF3B	100	97.059	Callithrix_jacchus
ENSOARG00000016051	-	100	95.679	ENSCAFG00000018426	UPF3B	100	95.679	Canis_familiaris
ENSOARG00000016051	-	100	90.741	ENSCAFG00020004074	UPF3B	100	97.436	Canis_lupus_dingo
ENSOARG00000016051	-	100	99.383	ENSCHIG00000000247	-	100	99.383	Capra_hircus
ENSOARG00000016051	-	91	64.626	ENSCHIG00000011454	-	92	62.812	Capra_hircus
ENSOARG00000016051	-	98	98.737	ENSCHIG00000018011	-	100	98.737	Capra_hircus
ENSOARG00000016051	-	100	92.181	ENSTSYG00000014690	UPF3B	100	94.737	Carlito_syrichta
ENSOARG00000016051	-	99	57.025	ENSCCAG00000029813	-	97	69.597	Cebus_capucinus
ENSOARG00000016051	-	85	47.877	ENSCCAG00000018406	UPF3A	82	43.571	Cebus_capucinus
ENSOARG00000016051	-	70	73.239	ENSCCAG00000021964	-	100	73.239	Cebus_capucinus
ENSOARG00000016051	-	100	95.267	ENSCATG00000017506	UPF3B	100	97.059	Cercocebus_atys
ENSOARG00000016051	-	100	89.918	ENSCLAG00000003260	UPF3B	100	89.918	Chinchilla_lanigera
ENSOARG00000016051	-	100	95.267	ENSCSAG00000018348	UPF3B	100	95.267	Chlorocebus_sabaeus
ENSOARG00000016051	-	99	63.765	ENSCPBG00000020685	UPF3B	93	65.929	Chrysemys_picta_bellii
ENSOARG00000016051	-	70	97.059	ENSCANG00000029220	UPF3B	100	97.059	Colobus_angolensis_palliatus
ENSOARG00000016051	-	100	79.713	ENSCGRG00001006858	-	100	79.918	Cricetulus_griseus_chok1gshd
ENSOARG00000016051	-	76	78.747	ENSCGRG00001013643	-	94	76.033	Cricetulus_griseus_chok1gshd
ENSOARG00000016051	-	89	80.963	ENSCGRG00000007627	Upf3b	100	81.193	Cricetulus_griseus_crigri
ENSOARG00000016051	-	93	55.844	ENSCSEG00000002046	upf3b	90	56.897	Cynoglossus_semilaevis
ENSOARG00000016051	-	96	51.633	ENSCVAG00000005030	upf3b	99	50.398	Cyprinodon_variegatus
ENSOARG00000016051	-	93	57.143	ENSDARG00000000489	upf3b	97	56.237	Danio_rerio
ENSOARG00000016051	-	100	94.033	ENSDNOG00000008665	UPF3B	100	94.033	Dasypus_novemcinctus
ENSOARG00000016051	-	100	84.774	ENSDORG00000006077	Upf3b	100	84.774	Dipodomys_ordii
ENSOARG00000016051	-	90	48.667	ENSEASG00005021884	UPF3A	84	44.235	Equus_asinus_asinus
ENSOARG00000016051	-	99	91.546	ENSEASG00005012919	UPF3B	100	98.230	Equus_asinus_asinus
ENSOARG00000016051	-	99	91.546	ENSECAG00000016947	UPF3B	100	94.853	Equus_caballus
ENSOARG00000016051	-	90	48.889	ENSECAG00000017141	UPF3A	84	44.471	Equus_caballus
ENSOARG00000016051	-	92	51.967	ENSELUG00000020389	upf3b	100	49.806	Esox_lucius
ENSOARG00000016051	-	89	46.943	ENSFCAG00000014602	UPF3A	87	43.567	Felis_catus
ENSOARG00000016051	-	100	94.877	ENSFCAG00000004388	UPF3B	100	95.287	Felis_catus
ENSOARG00000016051	-	99	66.075	ENSFALG00000001569	UPF3B	99	65.613	Ficedula_albicollis
ENSOARG00000016051	-	100	90.329	ENSFDAG00000018869	UPF3B	100	90.329	Fukomys_damarensis
ENSOARG00000016051	-	93	51.948	ENSFHEG00000017895	upf3b	96	51.050	Fundulus_heteroclitus
ENSOARG00000016051	-	93	54.176	ENSGMOG00000001621	upf3b	93	54.604	Gadus_morhua
ENSOARG00000016051	-	91	67.406	ENSGALG00000008618	UPF3B	99	66.667	Gallus_gallus
ENSOARG00000016051	-	96	52.766	ENSGAFG00000000829	upf3b	96	53.911	Gambusia_affinis
ENSOARG00000016051	-	92	54.902	ENSGACG00000017435	upf3b	94	56.009	Gasterosteus_aculeatus
ENSOARG00000016051	-	99	65.720	ENSGAGG00000001219	UPF3B	99	65.323	Gopherus_agassizii
ENSOARG00000016051	-	89	46.980	ENSGGOG00000015428	UPF3A	86	46.980	Gorilla_gorilla
ENSOARG00000016051	-	100	95.267	ENSGGOG00000023995	UPF3B	100	97.059	Gorilla_gorilla
ENSOARG00000016051	-	88	39.408	ENSGGOG00000041219	-	90	36.239	Gorilla_gorilla
ENSOARG00000016051	-	88	39.408	ENSGGOG00000043074	-	85	36.239	Gorilla_gorilla
ENSOARG00000016051	-	96	55.042	ENSHBUG00000017393	upf3b	97	56.159	Haplochromis_burtoni
ENSOARG00000016051	-	100	90.329	ENSHGLG00000019582	-	100	90.329	Heterocephalus_glaber_female
ENSOARG00000016051	-	86	81.971	ENSHGLG00000011189	-	95	81.971	Heterocephalus_glaber_female
ENSOARG00000016051	-	100	87.243	ENSHGLG00100002042	-	100	87.654	Heterocephalus_glaber_male
ENSOARG00000016051	-	86	81.971	ENSHGLG00100001889	-	95	81.250	Heterocephalus_glaber_male
ENSOARG00000016051	-	93	55.556	ENSHCOG00000017004	upf3b	93	53.533	Hippocampus_comes
ENSOARG00000016051	-	97	55.072	ENSIPUG00000019249	upf3b	98	55.694	Ictalurus_punctatus
ENSOARG00000016051	-	100	89.918	ENSSTOG00000001101	UPF3B	100	89.918	Ictidomys_tridecemlineatus
ENSOARG00000016051	-	100	86.066	ENSJJAG00000000053	Upf3b	100	86.270	Jaculus_jaculus
ENSOARG00000016051	-	96	53.700	ENSKMAG00000020300	upf3b	96	51.767	Kryptolebias_marmoratus
ENSOARG00000016051	-	62	62.046	ENSLBEG00000028689	upf3b	59	62.046	Labrus_bergylta
ENSOARG00000016051	-	90	59.382	ENSLACG00000008691	UPF3B	100	58.167	Latimeria_chalumnae
ENSOARG00000016051	-	53	70.543	ENSLOCG00000015238	upf3b	93	58.581	Lepisosteus_oculatus
ENSOARG00000016051	-	90	51.322	ENSLOCG00000002665	upf3a	91	46.507	Lepisosteus_oculatus
ENSOARG00000016051	-	100	90.741	ENSLAFG00000001267	UPF3B	100	90.741	Loxodonta_africana
ENSOARG00000016051	-	89	42.563	ENSLAFG00000023358	UPF3A	99	42.202	Loxodonta_africana
ENSOARG00000016051	-	100	95.062	ENSMFAG00000045414	UPF3B	100	97.059	Macaca_fascicularis
ENSOARG00000016051	-	100	95.062	ENSMMUG00000020222	UPF3B	100	97.059	Macaca_mulatta
ENSOARG00000016051	-	100	95.062	ENSMNEG00000039794	UPF3B	100	97.059	Macaca_nemestrina
ENSOARG00000016051	-	100	95.267	ENSMLEG00000010999	UPF3B	100	97.059	Mandrillus_leucophaeus
ENSOARG00000016051	-	96	54.717	ENSMZEG00005007871	upf3b	97	55.833	Maylandia_zebra
ENSOARG00000016051	-	86	49.539	ENSMGAG00000014837	UPF3A	99	43.750	Meleagris_gallopavo
ENSOARG00000016051	-	81	66.089	ENSMGAG00000007728	UPF3B	99	67.327	Meleagris_gallopavo
ENSOARG00000016051	-	100	82.582	ENSMAUG00000008705	Upf3b	100	82.787	Mesocricetus_auratus
ENSOARG00000016051	-	70	97.070	ENSMICG00000001743	UPF3B	100	97.070	Microcebus_murinus
ENSOARG00000016051	-	100	85.656	ENSMOCG00000017893	Upf3b	100	84.631	Microtus_ochrogaster
ENSOARG00000016051	-	96	52.929	ENSMMOG00000004183	upf3b	96	53.653	Mola_mola
ENSOARG00000016051	-	88	50.787	ENSMODG00000003159	UPF3A	96	49.556	Monodelphis_domestica
ENSOARG00000016051	-	89	72.109	ENSMODG00000010232	UPF3B	99	71.882	Monodelphis_domestica
ENSOARG00000016051	-	61	64.430	ENSMALG00000008042	upf3b	96	54.357	Monopterus_albus
ENSOARG00000016051	-	100	80.738	MGP_CAROLIEiJ_G0032999	Upf3b	100	80.943	Mus_caroli
ENSOARG00000016051	-	100	80.943	ENSMUSG00000036572	Upf3b	100	81.148	Mus_musculus
ENSOARG00000016051	-	100	79.918	MGP_PahariEiJ_G0031543	Upf3b	100	80.123	Mus_pahari
ENSOARG00000016051	-	100	80.943	MGP_SPRETEiJ_G0034152	Upf3b	100	81.148	Mus_spretus
ENSOARG00000016051	-	98	92.842	ENSMPUG00000001531	UPF3B	100	92.842	Mustela_putorius_furo
ENSOARG00000016051	-	100	92.593	ENSMLUG00000010821	UPF3B	100	92.593	Myotis_lucifugus
ENSOARG00000016051	-	100	80.533	ENSNGAG00000008231	Upf3b	100	81.762	Nannospalax_galili
ENSOARG00000016051	-	85	47.765	ENSNLEG00000007563	UPF3A	82	43.855	Nomascus_leucogenys
ENSOARG00000016051	-	97	95.349	ENSNLEG00000014897	UPF3B	100	95.267	Nomascus_leucogenys
ENSOARG00000016051	-	64	82.911	ENSMEUG00000015615	UPF3B	81	83.019	Notamacropus_eugenii
ENSOARG00000016051	-	100	84.156	ENSODEG00000002186	-	100	83.951	Octodon_degus
ENSOARG00000016051	-	100	55.221	ENSONIG00000002536	upf3b	100	56.713	Oreochromis_niloticus
ENSOARG00000016051	-	89	63.801	ENSOANG00000002594	-	99	63.801	Ornithorhynchus_anatinus
ENSOARG00000016051	-	100	94.033	ENSOCUG00000010213	UPF3B	100	94.033	Oryctolagus_cuniculus
ENSOARG00000016051	-	85	51.054	ENSORLG00000010911	upf3a	82	45.540	Oryzias_latipes
ENSOARG00000016051	-	94	55.224	ENSORLG00000001026	upf3b	94	55.224	Oryzias_latipes
ENSOARG00000016051	-	94	54.565	ENSORLG00020003758	upf3b	94	54.777	Oryzias_latipes_hni
ENSOARG00000016051	-	87	43.875	ENSORLG00020014317	upf3a	82	50.000	Oryzias_latipes_hni
ENSOARG00000016051	-	94	54.584	ENSORLG00015012954	upf3b	94	54.584	Oryzias_latipes_hsok
ENSOARG00000016051	-	87	53.759	ENSOMEG00000014736	upf3b	98	53.988	Oryzias_melastigma
ENSOARG00000016051	-	98	77.941	ENSOGAG00000033003	-	100	78.361	Otolemur_garnettii
ENSOARG00000016051	-	100	91.152	ENSOGAG00000004643	-	100	91.152	Otolemur_garnettii
ENSOARG00000016051	-	100	95.267	ENSPPAG00000040390	UPF3B	100	97.059	Pan_paniscus
ENSOARG00000016051	-	89	46.756	ENSPPAG00000042267	UPF3A	86	46.756	Pan_paniscus
ENSOARG00000016051	-	91	46.552	ENSPPRG00000025062	UPF3A	87	44.018	Panthera_pardus
ENSOARG00000016051	-	100	95.679	ENSPPRG00000023536	UPF3B	100	95.679	Panthera_pardus
ENSOARG00000016051	-	100	91.600	ENSPTIG00000015264	UPF3B	100	92.800	Panthera_tigris_altaica
ENSOARG00000016051	-	89	46.756	ENSPTRG00000006073	UPF3A	86	46.018	Pan_troglodytes
ENSOARG00000016051	-	100	95.267	ENSPTRG00000022228	UPF3B	100	97.059	Pan_troglodytes
ENSOARG00000016051	-	100	95.267	ENSPANG00000000900	UPF3B	100	97.059	Papio_anubis
ENSOARG00000016051	-	93	54.701	ENSPKIG00000019226	upf3b	75	77.586	Paramormyrops_kingsleyae
ENSOARG00000016051	-	56	70.863	ENSPSIG00000005833	UPF3B	92	70.909	Pelodiscus_sinensis
ENSOARG00000016051	-	85	52.273	ENSPSIG00000007468	UPF3A	98	50.909	Pelodiscus_sinensis
ENSOARG00000016051	-	56	66.547	ENSPMGG00000016067	upf3b	94	66.308	Periophthalmus_magnuspinnatus
ENSOARG00000016051	-	100	85.481	ENSPEMG00000012352	Upf3b	100	85.685	Peromyscus_maniculatus_bairdii
ENSOARG00000016051	-	93	68.192	ENSPCIG00000028914	UPF3B	92	67.401	Phascolarctos_cinereus
ENSOARG00000016051	-	85	49.338	ENSPCIG00000019590	-	66	69.935	Phascolarctos_cinereus
ENSOARG00000016051	-	96	54.255	ENSPLAG00000005105	upf3b	96	55.115	Poecilia_latipinna
ENSOARG00000016051	-	96	54.255	ENSPLAG00000019922	upf3b	96	55.115	Poecilia_latipinna
ENSOARG00000016051	-	50	67.081	ENSPLAG00000011960	upf3a	83	49.533	Poecilia_latipinna
ENSOARG00000016051	-	96	54.468	ENSPMEG00000023532	upf3b	96	55.603	Poecilia_mexicana
ENSOARG00000016051	-	69	97.193	ENSPPYG00000020675	-	100	97.193	Pongo_abelii
ENSOARG00000016051	-	89	46.756	ENSPPYG00000005536	UPF3A	86	46.756	Pongo_abelii
ENSOARG00000016051	-	100	92.387	ENSPCAG00000009464	UPF3B	100	92.387	Procavia_capensis
ENSOARG00000016051	-	100	94.661	ENSPCOG00000021960	UPF3B	100	97.070	Propithecus_coquereli
ENSOARG00000016051	-	87	45.000	ENSPVAG00000005656	UPF3A	85	39.238	Pteropus_vampyrus
ENSOARG00000016051	-	100	81.893	ENSPVAG00000014075	UPF3B	100	81.893	Pteropus_vampyrus
ENSOARG00000016051	-	96	55.485	ENSPNYG00000009846	upf3b	96	56.604	Pundamilia_nyererei
ENSOARG00000016051	-	98	54.361	ENSPNAG00000021528	upf3b	99	54.970	Pygocentrus_nattereri
ENSOARG00000016051	-	100	84.221	ENSRNOG00000039994	Upf3b	100	84.426	Rattus_norvegicus
ENSOARG00000016051	-	82	92.500	ENSRBIG00000037219	UPF3B	100	92.500	Rhinopithecus_bieti
ENSOARG00000016051	-	100	95.267	ENSRROG00000041031	UPF3B	100	97.059	Rhinopithecus_roxellana
ENSOARG00000016051	-	76	45.692	ENSSBOG00000029989	UPF3A	80	40.897	Saimiri_boliviensis_boliviensis
ENSOARG00000016051	-	100	94.856	ENSSBOG00000019740	UPF3B	100	96.324	Saimiri_boliviensis_boliviensis
ENSOARG00000016051	-	88	50.000	ENSSHAG00000009895	UPF3A	98	48.775	Sarcophilus_harrisii
ENSOARG00000016051	-	88	71.889	ENSSHAG00000008634	UPF3B	99	67.418	Sarcophilus_harrisii
ENSOARG00000016051	-	100	56.653	ENSSFOG00015005614	upf3b	100	57.490	Scleropages_formosus
ENSOARG00000016051	-	93	53.945	ENSSMAG00000012913	upf3b	84	67.509	Scophthalmus_maximus
ENSOARG00000016051	-	61	69.880	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSOARG00000016051	-	96	50.209	ENSSDUG00000005682	upf3b	97	51.351	Seriola_dumerili
ENSOARG00000016051	-	96	53.112	ENSSLDG00000003130	upf3b	97	51.559	Seriola_lalandi_dorsalis
ENSOARG00000016051	-	89	85.812	ENSSARG00000004147	UPF3B	100	85.812	Sorex_araneus
ENSOARG00000016051	-	99	64.128	ENSSPUG00000013082	UPF3B	99	62.525	Sphenodon_punctatus
ENSOARG00000016051	-	96	54.088	ENSSPAG00000009989	upf3b	96	55.439	Stegastes_partitus
ENSOARG00000016051	-	100	93.827	ENSSSCG00000012617	UPF3B	100	93.827	Sus_scrofa
ENSOARG00000016051	-	89	68.397	ENSTGUG00000003413	UPF3B	99	68.623	Taeniopygia_guttata
ENSOARG00000016051	-	84	53.207	ENSTGUG00000009493	UPF3A	99	52.370	Taeniopygia_guttata
ENSOARG00000016051	-	87	55.452	ENSTRUG00000010645	upf3b	98	54.054	Takifugu_rubripes
ENSOARG00000016051	-	94	51.820	ENSTNIG00000015763	upf3b	93	51.126	Tetraodon_nigroviridis
ENSOARG00000016051	-	100	78.807	ENSTBEG00000003229	UPF3B	100	78.807	Tupaia_belangeri
ENSOARG00000016051	-	100	89.549	ENSUAMG00000024565	UPF3B	100	95.575	Ursus_americanus
ENSOARG00000016051	-	93	81.458	ENSUMAG00000002150	UPF3B	99	83.750	Ursus_maritimus
ENSOARG00000016051	-	85	96.368	ENSVPAG00000009971	UPF3B	100	96.368	Vicugna_pacos
ENSOARG00000016051	-	100	90.535	ENSVVUG00000011594	UPF3B	100	96.581	Vulpes_vulpes
ENSOARG00000016051	-	87	54.358	ENSXETG00000007440	upf3b	74	78.161	Xenopus_tropicalis
ENSOARG00000016051	-	84	44.869	ENSXETG00000002572	upf3a	90	44.869	Xenopus_tropicalis
ENSOARG00000016051	-	93	52.061	ENSXCOG00000016586	upf3b	97	65.278	Xiphophorus_couchianus
ENSOARG00000016051	-	60	66.875	ENSXMAG00000013452	upf3a	82	45.519	Xiphophorus_maculatus
ENSOARG00000016051	-	99	52.857	ENSXMAG00000013680	upf3b	98	53.049	Xiphophorus_maculatus