EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOARG00000019516 (Gene tree)
Gene ID: 101106505
Gene Symbol: PCBP1
Alias: -
Full Name: poly(rC) binding protein 1
Gene Type: protein_coding
Species: Ovis_aries
Status: putative
Strand: Minus strand
Length: 1071 bases
Position: chr3:38180016-38181086
Accession: 101106505
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOARP00000020962	KH_1	PF00013.29	1.2e-51	1	3
ENSOARP00000020962	KH_1	PF00013.29	1.2e-51	2	3
ENSOARP00000020962	KH_1	PF00013.29	1.2e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOART00000021254	PCBP1-201	1071	XM_004005809	ENSOARP00000020962	356 (aa)	XP_004005858	W5QE14

Gene Model

Click here to download ENSOARG00000019516's gene model file

Pathways

Pathway ID	Pathway Name	Source
oas03040	Spliceosome	KEGG
oas04216	Ferroptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOARG00000019516's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOARG00000019516	PCBP1	69	34.667	ENSOARG00000005881	KHSRP	82	34.667
ENSOARG00000019516	PCBP1	100	79.609	ENSOARG00000016466	PCBP2	100	79.609
ENSOARG00000019516	PCBP1	99	65.479	ENSOARG00000012704	PCBP3	91	65.479
ENSOARG00000019516	PCBP1	95	51.250	ENSOARG00000006603	PCBP4	81	51.250
ENSOARG00000019516	PCBP1	67	40.541	ENSOARG00000004870	NOVA1	59	40.541

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOARG00000019516	PCBP1	100	100.000	ENSG00000169564	PCBP1	100	100.000	Homo_sapiens
ENSOARG00000019516	PCBP1	100	97.191	ENSAMEG00000016094	PCBP1	100	97.191	Ailuropoda_melanoleuca
ENSOARG00000019516	PCBP1	89	87.658	ENSANAG00000027108	-	100	87.658	Aotus_nancymaae
ENSOARG00000019516	PCBP1	100	88.202	ENSANAG00000026077	-	100	88.202	Aotus_nancymaae
ENSOARG00000019516	PCBP1	79	95.053	ENSANAG00000031745	-	100	95.053	Aotus_nancymaae
ENSOARG00000019516	PCBP1	79	95.053	ENSANAG00000019364	-	100	95.053	Aotus_nancymaae
ENSOARG00000019516	PCBP1	100	85.674	ENSANAG00000033377	-	100	85.674	Aotus_nancymaae
ENSOARG00000019516	PCBP1	97	96.243	ENSANAG00000026989	-	99	96.243	Aotus_nancymaae
ENSOARG00000019516	PCBP1	100	89.045	ENSANAG00000023938	-	100	89.045	Aotus_nancymaae
ENSOARG00000019516	PCBP1	79	91.873	ENSANAG00000022494	-	100	91.873	Aotus_nancymaae
ENSOARG00000019516	PCBP1	91	100.000	ENSBTAG00000008985	PCBP1	99	100.000	Bos_taurus
ENSOARG00000019516	PCBP1	100	94.382	ENSCJAG00000038388	-	95	94.382	Callithrix_jacchus
ENSOARG00000019516	PCBP1	100	99.719	ENSCAFG00000003326	PCBP1	100	99.719	Canis_familiaris
ENSOARG00000019516	PCBP1	100	100.000	ENSCHIG00000007923	PCBP1	100	100.000	Capra_hircus
ENSOARG00000019516	PCBP1	100	99.438	ENSTSYG00000027848	PCBP1	100	99.438	Carlito_syrichta
ENSOARG00000019516	PCBP1	100	100.000	ENSCPOG00000013511	PCBP1	100	100.000	Cavia_porcellus
ENSOARG00000019516	PCBP1	100	91.292	ENSCCAG00000029186	-	98	91.292	Cebus_capucinus
ENSOARG00000019516	PCBP1	100	100.000	ENSCCAG00000019842	-	100	100.000	Cebus_capucinus
ENSOARG00000019516	PCBP1	100	100.000	ENSCATG00000015029	PCBP1	100	100.000	Cercocebus_atys
ENSOARG00000019516	PCBP1	100	99.438	ENSCLAG00000017909	PCBP1	100	99.438	Chinchilla_lanigera
ENSOARG00000019516	PCBP1	100	100.000	ENSCSAG00000019441	PCBP1	100	100.000	Chlorocebus_sabaeus
ENSOARG00000019516	PCBP1	72	84.706	ENSCANG00000033810	-	87	84.706	Colobus_angolensis_palliatus
ENSOARG00000019516	PCBP1	100	100.000	ENSCANG00000018039	-	100	100.000	Colobus_angolensis_palliatus
ENSOARG00000019516	PCBP1	100	89.888	ENSCANG00000032470	-	94	89.888	Colobus_angolensis_palliatus
ENSOARG00000019516	PCBP1	100	100.000	ENSCGRG00001015078	Pcbp1	100	100.000	Cricetulus_griseus_chok1gshd
ENSOARG00000019516	PCBP1	100	100.000	ENSCGRG00000018899	Pcbp1	100	100.000	Cricetulus_griseus_crigri
ENSOARG00000019516	PCBP1	80	99.298	ENSDNOG00000036372	PCBP1	99	99.298	Dasypus_novemcinctus
ENSOARG00000019516	PCBP1	100	100.000	ENSDORG00000008216	Pcbp1	100	100.000	Dipodomys_ordii
ENSOARG00000019516	PCBP1	100	100.000	ENSFCAG00000022238	PCBP1	100	100.000	Felis_catus
ENSOARG00000019516	PCBP1	100	99.719	ENSFDAG00000019637	PCBP1	100	99.719	Fukomys_damarensis
ENSOARG00000019516	PCBP1	100	100.000	ENSGGOG00000028130	PCBP1	100	100.000	Gorilla_gorilla
ENSOARG00000019516	PCBP1	100	97.753	ENSHGLG00000020243	-	100	97.753	Heterocephalus_glaber_female
ENSOARG00000019516	PCBP1	100	99.719	ENSHGLG00000020345	Pcbp1	100	99.719	Heterocephalus_glaber_female
ENSOARG00000019516	PCBP1	100	99.438	ENSHGLG00100019620	-	100	99.438	Heterocephalus_glaber_male
ENSOARG00000019516	PCBP1	100	99.719	ENSHGLG00100019761	Pcbp1	100	99.719	Heterocephalus_glaber_male
ENSOARG00000019516	PCBP1	100	100.000	ENSSTOG00000026002	PCBP1	100	100.000	Ictidomys_tridecemlineatus
ENSOARG00000019516	PCBP1	100	100.000	ENSJJAG00000000737	Pcbp1	100	100.000	Jaculus_jaculus
ENSOARG00000019516	PCBP1	95	88.427	ENSMFAG00000003400	PCBP1	100	88.427	Macaca_fascicularis
ENSOARG00000019516	PCBP1	100	100.000	ENSMMUG00000038295	PCBP1	100	100.000	Macaca_mulatta
ENSOARG00000019516	PCBP1	100	100.000	ENSMNEG00000002934	PCBP1	100	100.000	Macaca_nemestrina
ENSOARG00000019516	PCBP1	100	100.000	ENSMLEG00000027389	PCBP1	100	100.000	Mandrillus_leucophaeus
ENSOARG00000019516	PCBP1	100	99.719	ENSMAUG00000009843	Pcbp1	100	99.719	Mesocricetus_auratus
ENSOARG00000019516	PCBP1	100	100.000	ENSMICG00000038221	PCBP1	100	100.000	Microcebus_murinus
ENSOARG00000019516	PCBP1	100	100.000	ENSMOCG00000008102	Pcbp1	100	100.000	Microtus_ochrogaster
ENSOARG00000019516	PCBP1	100	100.000	MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	Mus_caroli
ENSOARG00000019516	PCBP1	100	100.000	ENSMUSG00000051695	Pcbp1	100	100.000	Mus_musculus
ENSOARG00000019516	PCBP1	100	100.000	MGP_PahariEiJ_G0022335	Pcbp1	100	100.000	Mus_pahari
ENSOARG00000019516	PCBP1	100	100.000	MGP_SPRETEiJ_G0029609	Pcbp1	100	100.000	Mus_spretus
ENSOARG00000019516	PCBP1	100	97.191	ENSMPUG00000007175	PCBP1	100	97.191	Mustela_putorius_furo
ENSOARG00000019516	PCBP1	100	100.000	ENSMLUG00000014173	PCBP1	100	100.000	Myotis_lucifugus
ENSOARG00000019516	PCBP1	100	100.000	ENSNGAG00000014909	-	100	100.000	Nannospalax_galili
ENSOARG00000019516	PCBP1	100	100.000	ENSNGAG00000011957	-	100	100.000	Nannospalax_galili
ENSOARG00000019516	PCBP1	100	100.000	ENSNLEG00000018722	PCBP1	100	100.000	Nomascus_leucogenys
ENSOARG00000019516	PCBP1	100	83.427	ENSODEG00000000263	PCBP1	100	83.427	Octodon_degus
ENSOARG00000019516	PCBP1	100	100.000	ENSOCUG00000003634	PCBP1	100	100.000	Oryctolagus_cuniculus
ENSOARG00000019516	PCBP1	100	97.191	ENSOGAG00000028946	PCBP1	100	97.191	Otolemur_garnettii
ENSOARG00000019516	PCBP1	100	98.034	ENSPPAG00000036116	PCBP1	99	98.599	Pan_paniscus
ENSOARG00000019516	PCBP1	100	100.000	ENSPPRG00000020533	PCBP1	100	100.000	Panthera_pardus
ENSOARG00000019516	PCBP1	100	100.000	ENSPTIG00000007318	PCBP1	100	100.000	Panthera_tigris_altaica
ENSOARG00000019516	PCBP1	100	100.000	ENSPTRG00000012025	PCBP1	100	100.000	Pan_troglodytes
ENSOARG00000019516	PCBP1	100	100.000	ENSPANG00000011314	PCBP1	100	100.000	Papio_anubis
ENSOARG00000019516	PCBP1	100	100.000	ENSPPYG00000012328	PCBP1	100	100.000	Pongo_abelii
ENSOARG00000019516	PCBP1	100	100.000	ENSPCOG00000026934	PCBP1	100	100.000	Propithecus_coquereli
ENSOARG00000019516	PCBP1	93	98.795	ENSRROG00000012514	-	100	98.795	Rhinopithecus_roxellana
ENSOARG00000019516	PCBP1	100	99.157	ENSRROG00000009684	-	95	99.157	Rhinopithecus_roxellana
ENSOARG00000019516	PCBP1	100	83.427	ENSSBOG00000035309	-	94	83.427	Saimiri_boliviensis_boliviensis
ENSOARG00000019516	PCBP1	100	99.719	ENSSSCG00000027224	PCBP1	100	99.719	Sus_scrofa
ENSOARG00000019516	PCBP1	51	100.000	ENSTBEG00000015706	-	51	100.000	Tupaia_belangeri
ENSOARG00000019516	PCBP1	91	99.690	ENSVVUG00000028033	PCBP1	99	99.690	Vulpes_vulpes