EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000000322 (Gene tree)
Gene ID: 100351489
Gene Symbol: PARN
Alias: -
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 174113 bases
Position: chr6:7493345-7667457
Accession: 100351489
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000000287	R3H	PF01424.22	2.2e-05	1	1
ENSOCUP00000000287	RNA_bind	PF08675.11	2.4e-33	1	1
ENSOCUP00000000287	CAF1	PF04857.20	3.4e-87	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000000324	PARN-201	1905	XM_002711762	ENSOCUP00000000287	635 (aa)	XP_002711808	G1SD24

Gene Model

Click here to download ENSOCUG00000000322's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000000322's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000000322	PARN	100	91.667	ENSG00000140694	PARN	100	91.696	Homo_sapiens
ENSOCUG00000000322	PARN	100	90.566	ENSAMEG00000011208	PARN	99	90.566	Ailuropoda_melanoleuca
ENSOCUG00000000322	PARN	91	67.857	ENSACIG00000000619	parn	96	67.695	Amphilophus_citrinellus
ENSOCUG00000000322	PARN	91	73.196	ENSAOCG00000003465	parn	83	73.196	Amphiprion_ocellaris
ENSOCUG00000000322	PARN	76	76.434	ENSAPEG00000010661	parn	93	76.434	Amphiprion_percula
ENSOCUG00000000322	PARN	91	74.742	ENSATEG00000004661	parn	83	74.742	Anabas_testudineus
ENSOCUG00000000322	PARN	99	83.886	ENSAPLG00000013914	PARN	99	83.886	Anas_platyrhynchos
ENSOCUG00000000322	PARN	99	77.519	ENSACAG00000004973	PARN	99	77.469	Anolis_carolinensis
ENSOCUG00000000322	PARN	100	90.409	ENSANAG00000031516	PARN	99	91.071	Aotus_nancymaae
ENSOCUG00000000322	PARN	91	74.913	ENSACLG00000004742	parn	83	74.655	Astatotilapia_calliptera
ENSOCUG00000000322	PARN	83	77.905	ENSAMXG00000012390	parn	86	75.429	Astyanax_mexicanus
ENSOCUG00000000322	PARN	100	88.031	ENSBTAG00000018097	PARN	100	90.815	Bos_taurus
ENSOCUG00000000322	PARN	100	91.038	ENSCJAG00000015866	PARN	99	91.071	Callithrix_jacchus
ENSOCUG00000000322	PARN	100	90.236	ENSCAFG00000018795	PARN	99	90.236	Canis_familiaris
ENSOCUG00000000322	PARN	100	90.551	ENSCAFG00020024126	PARN	99	90.551	Canis_lupus_dingo
ENSOCUG00000000322	PARN	100	91.024	ENSCHIG00000018143	PARN	99	91.024	Capra_hircus
ENSOCUG00000000322	PARN	74	62.578	ENSCAPG00000007984	PARN	78	62.578	Cavia_aperea
ENSOCUG00000000322	PARN	99	89.873	ENSCPOG00000002263	PARN	99	89.873	Cavia_porcellus
ENSOCUG00000000322	PARN	100	91.038	ENSCCAG00000030367	PARN	99	91.071	Cebus_capucinus
ENSOCUG00000000322	PARN	90	95.714	ENSCATG00000041368	PARN	99	96.935	Cercocebus_atys
ENSOCUG00000000322	PARN	99	90.032	ENSCLAG00000015406	PARN	99	90.032	Chinchilla_lanigera
ENSOCUG00000000322	PARN	100	91.667	ENSCSAG00000008142	PARN	99	91.667	Chlorocebus_sabaeus
ENSOCUG00000000322	PARN	99	75.277	ENSCHOG00000007014	PARN	100	75.277	Choloepus_hoffmanni
ENSOCUG00000000322	PARN	88	84.848	ENSCPBG00000006609	PARN	97	84.916	Chrysemys_picta_bellii
ENSOCUG00000000322	PARN	80	44.129	ENSCING00000010142	-	99	44.129	Ciona_intestinalis
ENSOCUG00000000322	PARN	100	79.389	ENSCANG00000028849	-	99	91.071	Colobus_angolensis_palliatus
ENSOCUG00000000322	PARN	100	85.063	ENSCGRG00001012096	Parn	99	85.063	Cricetulus_griseus_chok1gshd
ENSOCUG00000000322	PARN	100	85.063	ENSCGRG00000004939	Parn	99	85.063	Cricetulus_griseus_crigri
ENSOCUG00000000322	PARN	91	71.355	ENSCSEG00000002064	parn	97	63.256	Cynoglossus_semilaevis
ENSOCUG00000000322	PARN	91	72.931	ENSCVAG00000014848	parn	82	72.931	Cyprinodon_variegatus
ENSOCUG00000000322	PARN	99	63.623	ENSDARG00000102634	parn	86	70.599	Danio_rerio
ENSOCUG00000000322	PARN	100	92.283	ENSDNOG00000000833	PARN	97	94.909	Dasypus_novemcinctus
ENSOCUG00000000322	PARN	74	90.000	ENSETEG00000014828	-	77	90.000	Echinops_telfairi
ENSOCUG00000000322	PARN	55	53.371	ENSEBUG00000007052	PARN	70	71.111	Eptatretus_burgeri
ENSOCUG00000000322	PARN	100	90.236	ENSEASG00005011400	PARN	99	90.236	Equus_asinus_asinus
ENSOCUG00000000322	PARN	100	90.079	ENSECAG00000017792	PARN	99	90.079	Equus_caballus
ENSOCUG00000000322	PARN	85	82.464	ENSEEUG00000010370	PARN	85	82.464	Erinaceus_europaeus
ENSOCUG00000000322	PARN	83	76.316	ENSELUG00000013139	parn	70	76.316	Esox_lucius
ENSOCUG00000000322	PARN	100	91.654	ENSFCAG00000044961	PARN	99	91.654	Felis_catus
ENSOCUG00000000322	PARN	99	82.567	ENSFALG00000003911	PARN	98	82.567	Ficedula_albicollis
ENSOCUG00000000322	PARN	99	89.873	ENSFDAG00000009234	PARN	99	89.873	Fukomys_damarensis
ENSOCUG00000000322	PARN	92	66.610	ENSFHEG00000013738	parn	83	77.358	Fundulus_heteroclitus
ENSOCUG00000000322	PARN	85	74.679	ENSGMOG00000003231	parn	99	74.679	Gadus_morhua
ENSOCUG00000000322	PARN	100	82.047	ENSGALG00000003091	PARN	99	82.047	Gallus_gallus
ENSOCUG00000000322	PARN	90	72.790	ENSGAFG00000011061	parn	83	72.232	Gambusia_affinis
ENSOCUG00000000322	PARN	83	76.981	ENSGACG00000019501	parn	99	68.446	Gasterosteus_aculeatus
ENSOCUG00000000322	PARN	51	79.755	ENSGAGG00000023281	PARN	83	79.755	Gopherus_agassizii
ENSOCUG00000000322	PARN	97	91.748	ENSGGOG00000025224	PARN	99	91.748	Gorilla_gorilla
ENSOCUG00000000322	PARN	91	75.087	ENSHBUG00000017906	parn	93	74.910	Haplochromis_burtoni
ENSOCUG00000000322	PARN	99	89.873	ENSHGLG00000010886	PARN	99	89.873	Heterocephalus_glaber_female
ENSOCUG00000000322	PARN	99	89.873	ENSHGLG00100014659	PARN	99	89.873	Heterocephalus_glaber_male
ENSOCUG00000000322	PARN	83	74.102	ENSHCOG00000008683	parn	91	74.102	Hippocampus_comes
ENSOCUG00000000322	PARN	99	57.055	ENSIPUG00000012401	parn	99	57.055	Ictalurus_punctatus
ENSOCUG00000000322	PARN	100	90.079	ENSSTOG00000007519	PARN	99	90.079	Ictidomys_tridecemlineatus
ENSOCUG00000000322	PARN	100	87.874	ENSJJAG00000023049	Parn	99	87.874	Jaculus_jaculus
ENSOCUG00000000322	PARN	92	73.299	ENSKMAG00000009462	parn	83	73.299	Kryptolebias_marmoratus
ENSOCUG00000000322	PARN	91	73.368	ENSLBEG00000009167	parn	89	73.368	Labrus_bergylta
ENSOCUG00000000322	PARN	79	79.010	ENSLACG00000004207	PARN	99	78.230	Latimeria_chalumnae
ENSOCUG00000000322	PARN	92	75.773	ENSLOCG00000000715	parn	84	75.430	Lepisosteus_oculatus
ENSOCUG00000000322	PARN	100	90.551	ENSLAFG00000015036	PARN	99	90.551	Loxodonta_africana
ENSOCUG00000000322	PARN	100	86.656	ENSMFAG00000044852	PARN	100	91.522	Macaca_fascicularis
ENSOCUG00000000322	PARN	100	91.509	ENSMMUG00000018849	PARN	99	91.509	Macaca_mulatta
ENSOCUG00000000322	PARN	100	91.667	ENSMNEG00000045108	PARN	99	91.667	Macaca_nemestrina
ENSOCUG00000000322	PARN	100	91.509	ENSMLEG00000031743	PARN	100	91.522	Mandrillus_leucophaeus
ENSOCUG00000000322	PARN	90	73.621	ENSMAMG00000006939	parn	82	73.621	Mastacembelus_armatus
ENSOCUG00000000322	PARN	91	75.087	ENSMZEG00005013590	parn	92	75.641	Maylandia_zebra
ENSOCUG00000000322	PARN	96	82.895	ENSMGAG00000001004	PARN	95	82.895	Meleagris_gallopavo
ENSOCUG00000000322	PARN	100	78.882	ENSMAUG00000008025	Parn	99	78.882	Mesocricetus_auratus
ENSOCUG00000000322	PARN	100	92.126	ENSMICG00000016053	PARN	99	92.857	Microcebus_murinus
ENSOCUG00000000322	PARN	77	90.631	ENSMOCG00000022211	Parn	99	90.631	Microtus_ochrogaster
ENSOCUG00000000322	PARN	83	76.371	ENSMMOG00000011333	parn	86	76.371	Mola_mola
ENSOCUG00000000322	PARN	77	92.292	ENSMODG00000004915	PARN	99	92.292	Monodelphis_domestica
ENSOCUG00000000322	PARN	83	79.057	ENSMALG00000019426	parn	90	79.057	Monopterus_albus
ENSOCUG00000000322	PARN	100	84.882	MGP_CAROLIEiJ_G0020466	Parn	99	84.882	Mus_caroli
ENSOCUG00000000322	PARN	50	30.982	ENSMUSG00000073460	Pnldc1	95	30.982	Mus_musculus
ENSOCUG00000000322	PARN	100	84.882	ENSMUSG00000022685	Parn	96	89.873	Mus_musculus
ENSOCUG00000000322	PARN	100	85.039	MGP_PahariEiJ_G0016172	Parn	99	85.039	Mus_pahari
ENSOCUG00000000322	PARN	100	84.882	MGP_SPRETEiJ_G0021361	Parn	99	84.882	Mus_spretus
ENSOCUG00000000322	PARN	100	90.866	ENSMPUG00000014464	PARN	99	90.866	Mustela_putorius_furo
ENSOCUG00000000322	PARN	77	92.261	ENSMLUG00000005414	PARN	99	92.261	Myotis_lucifugus
ENSOCUG00000000322	PARN	85	75.368	ENSNBRG00000006805	parn	92	75.368	Neolamprologus_brichardi
ENSOCUG00000000322	PARN	100	91.038	ENSNLEG00000010241	PARN	99	91.071	Nomascus_leucogenys
ENSOCUG00000000322	PARN	99	61.490	ENSMEUG00000008178	-	100	61.490	Notamacropus_eugenii
ENSOCUG00000000322	PARN	99	89.223	ENSOPRG00000012187	PARN	100	89.223	Ochotona_princeps
ENSOCUG00000000322	PARN	99	81.890	ENSODEG00000001617	PARN	99	81.890	Octodon_degus
ENSOCUG00000000322	PARN	91	75.260	ENSONIG00000000151	parn	99	69.290	Oreochromis_niloticus
ENSOCUG00000000322	PARN	60	81.842	ENSOANG00000020155	-	97	82.368	Ornithorhynchus_anatinus
ENSOCUG00000000322	PARN	94	70.413	ENSORLG00020010313	parn	88	70.413	Oryzias_latipes_hni
ENSOCUG00000000322	PARN	94	70.248	ENSORLG00015000300	parn	88	70.248	Oryzias_latipes_hsok
ENSOCUG00000000322	PARN	91	72.137	ENSOMEG00000019555	parn	95	65.741	Oryzias_melastigma
ENSOCUG00000000322	PARN	77	92.480	ENSOGAG00000014626	PARN	99	92.480	Otolemur_garnettii
ENSOCUG00000000322	PARN	77	95.316	ENSOARG00000007574	PARN	99	95.316	Ovis_aries
ENSOCUG00000000322	PARN	100	91.352	ENSPPAG00000031438	PARN	99	91.352	Pan_paniscus
ENSOCUG00000000322	PARN	100	91.496	ENSPPRG00000018583	PARN	99	91.496	Panthera_pardus
ENSOCUG00000000322	PARN	100	91.496	ENSPTIG00000012135	PARN	99	91.496	Panthera_tigris_altaica
ENSOCUG00000000322	PARN	100	91.352	ENSPTRG00000007792	PARN	99	91.352	Pan_troglodytes
ENSOCUG00000000322	PARN	100	88.365	ENSPANG00000020099	PARN	99	91.071	Papio_anubis
ENSOCUG00000000322	PARN	91	73.391	ENSPKIG00000022807	parn	89	68.954	Paramormyrops_kingsleyae
ENSOCUG00000000322	PARN	98	83.280	ENSPSIG00000014804	PARN	100	82.842	Pelodiscus_sinensis
ENSOCUG00000000322	PARN	80	77.407	ENSPMGG00000014431	parn	76	73.953	Periophthalmus_magnuspinnatus
ENSOCUG00000000322	PARN	100	82.992	ENSPEMG00000018439	Parn	99	82.992	Peromyscus_maniculatus_bairdii
ENSOCUG00000000322	PARN	81	67.379	ENSPMAG00000003956	parn	98	67.379	Petromyzon_marinus
ENSOCUG00000000322	PARN	66	85.203	ENSPCIG00000001259	PARN	91	84.762	Phascolarctos_cinereus
ENSOCUG00000000322	PARN	90	73.043	ENSPFOG00000012823	parn	83	72.308	Poecilia_formosa
ENSOCUG00000000322	PARN	90	73.217	ENSPLAG00000006395	parn	83	72.479	Poecilia_latipinna
ENSOCUG00000000322	PARN	90	73.217	ENSPMEG00000007711	parn	83	72.650	Poecilia_mexicana
ENSOCUG00000000322	PARN	90	72.870	ENSPREG00000000147	parn	83	72.308	Poecilia_reticulata
ENSOCUG00000000322	PARN	100	91.066	ENSPPYG00000007123	PARN	99	91.066	Pongo_abelii
ENSOCUG00000000322	PARN	95	80.826	ENSPCAG00000001741	PARN	100	80.826	Procavia_capensis
ENSOCUG00000000322	PARN	100	89.134	ENSPCOG00000019292	PARN	99	92.857	Propithecus_coquereli
ENSOCUG00000000322	PARN	99	88.273	ENSPVAG00000002547	PARN	100	88.273	Pteropus_vampyrus
ENSOCUG00000000322	PARN	91	75.087	ENSPNYG00000006835	parn	92	72.943	Pundamilia_nyererei
ENSOCUG00000000322	PARN	93	65.528	ENSPNAG00000018905	parn	86	72.575	Pygocentrus_nattereri
ENSOCUG00000000322	PARN	100	82.083	ENSRNOG00000002912	Parn	97	88.776	Rattus_norvegicus
ENSOCUG00000000322	PARN	52	88.589	ENSRBIG00000018726	PARN	100	88.589	Rhinopithecus_bieti
ENSOCUG00000000322	PARN	52	88.589	ENSRROG00000011162	-	100	88.589	Rhinopithecus_roxellana
ENSOCUG00000000322	PARN	100	89.623	ENSSBOG00000034726	PARN	99	91.071	Saimiri_boliviensis_boliviensis
ENSOCUG00000000322	PARN	66	92.601	ENSSHAG00000008493	PARN	94	92.601	Sarcophilus_harrisii
ENSOCUG00000000322	PARN	91	73.966	ENSSFOG00015014165	parn	87	77.524	Scleropages_formosus
ENSOCUG00000000322	PARN	91	71.111	ENSSMAG00000000685	parn	86	71.455	Scophthalmus_maximus
ENSOCUG00000000322	PARN	99	68.487	ENSSDUG00000014555	parn	83	73.630	Seriola_dumerili
ENSOCUG00000000322	PARN	91	78.929	ENSSARG00000014339	PARN	100	78.929	Sorex_araneus
ENSOCUG00000000322	PARN	99	83.861	ENSSPUG00000007719	PARN	99	83.465	Sphenodon_punctatus
ENSOCUG00000000322	PARN	99	68.541	ENSSPAG00000007095	parn	94	68.037	Stegastes_partitus
ENSOCUG00000000322	PARN	100	90.236	ENSSSCG00000007878	PARN	89	90.236	Sus_scrofa
ENSOCUG00000000322	PARN	55	31.285	ENSTGUG00000011418	PNLDC1	68	31.285	Taeniopygia_guttata
ENSOCUG00000000322	PARN	100	82.835	ENSTGUG00000004971	PARN	99	82.835	Taeniopygia_guttata
ENSOCUG00000000322	PARN	99	68.594	ENSTNIG00000008252	parn	99	68.906	Tetraodon_nigroviridis
ENSOCUG00000000322	PARN	91	78.066	ENSTBEG00000010407	PARN	100	78.066	Tupaia_belangeri
ENSOCUG00000000322	PARN	99	87.480	ENSTTRG00000002843	PARN	100	87.480	Tursiops_truncatus
ENSOCUG00000000322	PARN	69	83.908	ENSUAMG00000008283	PARN	90	83.908	Ursus_americanus
ENSOCUG00000000322	PARN	100	91.181	ENSUMAG00000004527	PARN	99	91.181	Ursus_maritimus
ENSOCUG00000000322	PARN	97	88.925	ENSVPAG00000008968	PARN	100	88.925	Vicugna_pacos
ENSOCUG00000000322	PARN	100	90.866	ENSVVUG00000019509	PARN	99	90.866	Vulpes_vulpes
ENSOCUG00000000322	PARN	99	75.000	ENSXETG00000010994	parn	99	81.958	Xenopus_tropicalis
ENSOCUG00000000322	PARN	90	68.870	ENSXCOG00000015990	parn	95	68.376	Xiphophorus_couchianus
ENSOCUG00000000322	PARN	91	72.355	ENSXMAG00000014783	parn	83	72.355	Xiphophorus_maculatus