EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOCUG00000000562 (Gene tree)
Gene ID
100340846
Gene Symbol
PABPC4
Alias
-
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Oryctolagus_cuniculus
Status
putative
Strand
Plus strand
Length
13706 bases
Position
chr13:126928666-126942371
Accession
100340846
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOCUP00000000485PABPPF00658.187.1e-2811
ENSOCUP00000000485RRM_5PF13893.68.1e-0911
ENSOCUP00000000485RRM_1PF00076.221.3e-9214
ENSOCUP00000000485RRM_1PF00076.221.3e-9224
ENSOCUP00000000485RRM_1PF00076.221.3e-9234
ENSOCUP00000000485RRM_1PF00076.221.3e-9244
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOCUT00000000561PABPC4-2012200XM_002715194ENSOCUP00000000485715 (aa)XP_002715240G1SDJ7
Gene Model
Click here to download ENSOCUG00000000562's gene model file
Pathways
Pathway IDPathway NameSource
ocu03013RNA transportKEGG
ocu03015mRNA surveillance pathwayKEGG
ocu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000000562's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOCUG00000000562PABPC45138.158ENSOCUG00000004961CELF25538.158
ENSOCUG00000000562PABPC45230.625ENSOCUG00000016262ELAVL48430.818
ENSOCUG00000000562PABPC48875.428ENSOCUG00000004354-9575.274
ENSOCUG00000000562PABPC45234.940ENSOCUG00000005891ELAVL28334.940
ENSOCUG00000000562PABPC45176.650ENSOCUG00000002565-9976.650
ENSOCUG00000000562PABPC45267.135ENSOCUG00000010919PABPC59566.942
ENSOCUG00000000562PABPC48864.420ENSOCUG00000003005PABPC1L9864.844
ENSOCUG00000000562PABPC48875.272ENSOCUG00000023935-9575.117
ENSOCUG00000000562PABPC45130.526ENSOCUG00000015871ELAVL17430.526
ENSOCUG00000000562PABPC45031.250ENSOCUG00000003783TIAL17730.682
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOCUG00000000562PABPC48899.209ENSG00000090621PABPC4100100.000Homo_sapiens
ENSOCUG00000000562PABPC48879.435ENSAPOG00000001161pabpc49580.691Acanthochromis_polyacanthus
ENSOCUG00000000562PABPC48898.734ENSAMEG00000011535-9698.734Ailuropoda_melanoleuca
ENSOCUG00000000562PABPC48754.720ENSAMEG00000015083-9454.400Ailuropoda_melanoleuca
ENSOCUG00000000562PABPC48880.848ENSACIG00000023343pabpc49581.476Amphilophus_citrinellus
ENSOCUG00000000562PABPC48879.906ENSAOCG00000021529pabpc48693.421Amphiprion_ocellaris
ENSOCUG00000000562PABPC48879.906ENSAPEG00000019196pabpc49580.220Amphiprion_percula
ENSOCUG00000000562PABPC48878.560ENSATEG00000007402pabpc49579.624Anabas_testudineus
ENSOCUG00000000562PABPC48887.342ENSAPLG00000009729-9687.342Anas_platyrhynchos
ENSOCUG00000000562PABPC48885.561ENSACAG00000002544PABPC49585.561Anolis_carolinensis
ENSOCUG00000000562PABPC48899.051ENSANAG00000025079PABPC49699.051Aotus_nancymaae
ENSOCUG00000000562PABPC48879.906ENSACLG00000019558pabpc49580.534Astatotilapia_calliptera
ENSOCUG00000000562PABPC48875.786ENSAMXG00000018779pabpc49575.629Astyanax_mexicanus
ENSOCUG00000000562PABPC45186.826ENSBTAG00000048536-9886.826Bos_taurus
ENSOCUG00000000562PABPC48896.367ENSBTAG00000017125PABPC49696.367Bos_taurus
ENSOCUG00000000562PABPC48898.892ENSCJAG00000002512-9698.892Callithrix_jacchus
ENSOCUG00000000562PABPC47282.784ENSCJAG00000045953-9282.721Callithrix_jacchus
ENSOCUG00000000562PABPC48898.768ENSCAFG00000003081PABPC49694.462Canis_familiaris
ENSOCUG00000000562PABPC48898.892ENSCAFG00020004161PABPC49698.892Canis_lupus_dingo
ENSOCUG00000000562PABPC48898.892ENSCHIG00000019398-9698.892Capra_hircus
ENSOCUG00000000562PABPC48777.083ENSCHIG00000023385-9577.083Capra_hircus
ENSOCUG00000000562PABPC48899.209ENSTSYG00000006532PABPC49699.209Carlito_syrichta
ENSOCUG00000000562PABPC48898.889ENSCAPG00000015984PABPC49698.889Cavia_aperea
ENSOCUG00000000562PABPC48899.051ENSCPOG00000009552PABPC49699.051Cavia_porcellus
ENSOCUG00000000562PABPC48899.051ENSCCAG00000037306PABPC49699.051Cebus_capucinus
ENSOCUG00000000562PABPC48899.367ENSCATG00000042164PABPC49699.367Cercocebus_atys
ENSOCUG00000000562PABPC48899.051ENSCLAG00000011899PABPC49699.051Chinchilla_lanigera
ENSOCUG00000000562PABPC48899.367ENSCSAG00000001135PABPC49699.367Chlorocebus_sabaeus
ENSOCUG00000000562PABPC47297.361ENSCHOG00000005327PABPC47697.361Choloepus_hoffmanni
ENSOCUG00000000562PABPC48887.658ENSCPBG00000001038PABPC49687.658Chrysemys_picta_bellii
ENSOCUG00000000562PABPC48899.197ENSCANG00000034177PABPC49699.197Colobus_angolensis_palliatus
ENSOCUG00000000562PABPC48897.627ENSCGRG00001018166Pabpc49597.627Cricetulus_griseus_chok1gshd
ENSOCUG00000000562PABPC48895.024ENSCGRG00000009777Pabpc49595.024Cricetulus_griseus_crigri
ENSOCUG00000000562PABPC48879.435ENSCSEG00000000130pabpc49579.906Cynoglossus_semilaevis
ENSOCUG00000000562PABPC48880.096ENSCVAG00000019246pabpc49581.051Cyprinodon_variegatus
ENSOCUG00000000562PABPC48881.348ENSDARG00000059259pabpc410081.162Danio_rerio
ENSOCUG00000000562PABPC48899.287ENSDNOG00000018444-9699.287Dasypus_novemcinctus
ENSOCUG00000000562PABPC48896.519ENSDORG00000011581Pabpc49696.519Dipodomys_ordii
ENSOCUG00000000562PABPC488100.000ENSETEG00000018453-80100.000Echinops_telfairi
ENSOCUG00000000562PABPC47761.749ENSETEG00000009172-9561.749Echinops_telfairi
ENSOCUG00000000562PABPC48872.884ENSEBUG00000013782pabpc49672.100Eptatretus_burgeri
ENSOCUG00000000562PABPC48873.041ENSEBUG00000000992pabpc49680.346Eptatretus_burgeri
ENSOCUG00000000562PABPC48899.367ENSEASG00005014119PABPC49699.367Equus_asinus_asinus
ENSOCUG00000000562PABPC48899.367ENSECAG00000009396PABPC49699.367Equus_caballus
ENSOCUG00000000562PABPC48896.361ENSEEUG00000002962PABPC49696.361Erinaceus_europaeus
ENSOCUG00000000562PABPC48880.031ENSELUG00000003195pabpc49580.818Esox_lucius
ENSOCUG00000000562PABPC48899.051ENSFCAG00000015254-9699.051Felis_catus
ENSOCUG00000000562PABPC48886.867ENSFALG00000000543PABPC49686.867Ficedula_albicollis
ENSOCUG00000000562PABPC48899.209ENSFDAG00000020016-9699.209Fukomys_damarensis
ENSOCUG00000000562PABPC47967.841ENSFDAG00000010581-9563.233Fukomys_damarensis
ENSOCUG00000000562PABPC48880.063ENSFHEG00000007548pabpc48893.421Fundulus_heteroclitus
ENSOCUG00000000562PABPC48879.624ENSGMOG00000019025pabpc49580.251Gadus_morhua
ENSOCUG00000000562PABPC48887.658ENSGALG00000003800PABPC49687.658Gallus_gallus
ENSOCUG00000000562PABPC48880.157ENSGAFG00000018195pabpc49895.556Gambusia_affinis
ENSOCUG00000000562PABPC48878.179ENSGACG00000007179pabpc49578.964Gasterosteus_aculeatus
ENSOCUG00000000562PABPC48887.500ENSGAGG00000001888PABPC49687.500Gopherus_agassizii
ENSOCUG00000000562PABPC48899.209ENSGGOG00000004002PABPC49699.209Gorilla_gorilla
ENSOCUG00000000562PABPC48880.063ENSHBUG00000020206pabpc49580.691Haplochromis_burtoni
ENSOCUG00000000562PABPC48899.367ENSHGLG00000011162PABPC49699.367Heterocephalus_glaber_female
ENSOCUG00000000562PABPC48896.835ENSHGLG00100001580PABPC49696.835Heterocephalus_glaber_male
ENSOCUG00000000562PABPC48879.560ENSHCOG00000012694pabpc49580.189Hippocampus_comes
ENSOCUG00000000562PABPC48879.906ENSIPUG00000016620pabpc49581.034Ictalurus_punctatus
ENSOCUG00000000562PABPC48896.677ENSSTOG00000010416PABPC49696.677Ictidomys_tridecemlineatus
ENSOCUG00000000562PABPC48894.304ENSJJAG00000007781Pabpc49694.304Jaculus_jaculus
ENSOCUG00000000562PABPC48879.656ENSKMAG00000013597pabpc49579.937Kryptolebias_marmoratus
ENSOCUG00000000562PABPC48879.499ENSLBEG00000013654pabpc49580.251Labrus_bergylta
ENSOCUG00000000562PABPC48884.434ENSLACG00000011907PABPC49684.434Latimeria_chalumnae
ENSOCUG00000000562PABPC48882.520ENSLOCG00000001877pabpc49582.362Lepisosteus_oculatus
ENSOCUG00000000562PABPC48898.892ENSLAFG00000000151PABPC49698.892Loxodonta_africana
ENSOCUG00000000562PABPC48899.367ENSMFAG00000041481PABPC49699.367Macaca_fascicularis
ENSOCUG00000000562PABPC48899.367ENSMMUG00000007497PABPC49699.367Macaca_mulatta
ENSOCUG00000000562PABPC48899.209ENSMNEG00000043054PABPC49699.209Macaca_nemestrina
ENSOCUG00000000562PABPC48899.367ENSMLEG00000040716PABPC49699.367Mandrillus_leucophaeus
ENSOCUG00000000562PABPC48879.592ENSMAMG00000010025pabpc49880.315Mastacembelus_armatus
ENSOCUG00000000562PABPC48879.749ENSMZEG00005006141pabpc48795.946Maylandia_zebra
ENSOCUG00000000562PABPC48886.995ENSMGAG00000005408PABPC49586.995Meleagris_gallopavo
ENSOCUG00000000562PABPC45081.287ENSMAUG00000004089-9281.287Mesocricetus_auratus
ENSOCUG00000000562PABPC46388.462ENSMAUG00000001295-9788.462Mesocricetus_auratus
ENSOCUG00000000562PABPC464100.000ENSMAUG00000019763-78100.000Mesocricetus_auratus
ENSOCUG00000000562PABPC46799.142ENSMICG00000036729-7399.142Microcebus_murinus
ENSOCUG00000000562PABPC48295.093ENSMICG00000016633-9798.723Microcebus_murinus
ENSOCUG00000000562PABPC48898.101ENSMOCG00000006763Pabpc49598.101Microtus_ochrogaster
ENSOCUG00000000562PABPC48874.884ENSMMOG00000002363pabpc49575.969Mola_mola
ENSOCUG00000000562PABPC45173.729ENSMODG00000018051-9173.729Monodelphis_domestica
ENSOCUG00000000562PABPC45782.692ENSMODG00000019847-6882.692Monodelphis_domestica
ENSOCUG00000000562PABPC48888.942ENSMODG00000017657-9688.942Monodelphis_domestica
ENSOCUG00000000562PABPC48879.186ENSMALG00000011017pabpc49579.656Monopterus_albus
ENSOCUG00000000562PABPC48897.152MGP_CAROLIEiJ_G0026435-10099.291Mus_caroli
ENSOCUG00000000562PABPC48883.096MGP_CAROLIEiJ_G0024864-9583.096Mus_caroli
ENSOCUG00000000562PABPC48897.627ENSMUSG00000011257Pabpc410099.405Mus_musculus
ENSOCUG00000000562PABPC48897.592MGP_PahariEiJ_G0028765Pabpc4100100.000Mus_pahari
ENSOCUG00000000562PABPC48877.519MGP_SPRETEiJ_G0027415Pabpc410099.291Mus_spretus
ENSOCUG00000000562PABPC48899.051ENSMPUG00000014414-9699.051Mustela_putorius_furo
ENSOCUG00000000562PABPC48751.356ENSMPUG00000006836-9951.196Mustela_putorius_furo
ENSOCUG00000000562PABPC48891.930ENSMLUG00000012068PABPC49591.930Myotis_lucifugus
ENSOCUG00000000562PABPC48896.203ENSNGAG00000018292Pabpc49696.203Nannospalax_galili
ENSOCUG00000000562PABPC45292.308ENSNBRG00000009708pabpc49892.308Neolamprologus_brichardi
ENSOCUG00000000562PABPC45986.441ENSNBRG00000010047-7586.441Neolamprologus_brichardi
ENSOCUG00000000562PABPC48896.835ENSNLEG00000011928PABPC49696.835Nomascus_leucogenys
ENSOCUG00000000562PABPC47599.579ENSOPRG00000011984PABPC48799.579Ochotona_princeps
ENSOCUG00000000562PABPC48888.889ENSODEG00000017434-8994.937Octodon_degus
ENSOCUG00000000562PABPC48898.571ENSODEG00000006592-9698.571Octodon_degus
ENSOCUG00000000562PABPC48880.063ENSONIG00000008176pabpc49580.377Oreochromis_niloticus
ENSOCUG00000000562PABPC48887.342ENSOANG00000010001PABPC49687.342Ornithorhynchus_anatinus
ENSOCUG00000000562PABPC48890.741ENSORLG00000017479pabpc49490.741Oryzias_latipes
ENSOCUG00000000562PABPC48890.741ENSORLG00020018644pabpc49490.741Oryzias_latipes_hni
ENSOCUG00000000562PABPC48890.741ENSORLG00015015042pabpc49490.741Oryzias_latipes_hsok
ENSOCUG00000000562PABPC48880.063ENSOMEG00000014410pabpc49583.333Oryzias_melastigma
ENSOCUG00000000562PABPC48896.535ENSOGAG00000004067PABPC49696.535Otolemur_garnettii
ENSOCUG00000000562PABPC48898.892ENSOARG00000020060PABPC49698.892Ovis_aries
ENSOCUG00000000562PABPC48899.209ENSPPAG00000043625PABPC49699.209Pan_paniscus
ENSOCUG00000000562PABPC48899.051ENSPPRG00000024727PABPC49699.051Panthera_pardus
ENSOCUG00000000562PABPC48899.051ENSPTIG00000005829PABPC49699.051Panthera_tigris_altaica
ENSOCUG00000000562PABPC48899.209ENSPTRG00000000573PABPC49699.209Pan_troglodytes
ENSOCUG00000000562PABPC48899.209ENSPANG00000009484PABPC49699.209Papio_anubis
ENSOCUG00000000562PABPC48881.417ENSPKIG00000025356pabpc49882.047Paramormyrops_kingsleyae
ENSOCUG00000000562PABPC48887.658ENSPSIG00000016892PABPC49687.658Pelodiscus_sinensis
ENSOCUG00000000562PABPC48875.748ENSPMGG00000009073pabpc49577.603Periophthalmus_magnuspinnatus
ENSOCUG00000000562PABPC48890.981ENSPEMG00000024193-9590.981Peromyscus_maniculatus_bairdii
ENSOCUG00000000562PABPC48897.310ENSPEMG00000023569-9697.310Peromyscus_maniculatus_bairdii
ENSOCUG00000000562PABPC48269.802ENSPMAG00000002836pabpc410069.967Petromyzon_marinus
ENSOCUG00000000562PABPC48867.061ENSPMAG00000007885pabpc49566.208Petromyzon_marinus
ENSOCUG00000000562PABPC48888.291ENSPCIG00000020674PABPC49593.571Phascolarctos_cinereus
ENSOCUG00000000562PABPC48879.435ENSPFOG00000002682pabpc49580.220Poecilia_formosa
ENSOCUG00000000562PABPC48879.278ENSPLAG00000010112pabpc49580.691Poecilia_latipinna
ENSOCUG00000000562PABPC48879.435ENSPMEG00000019739pabpc49580.220Poecilia_mexicana
ENSOCUG00000000562PABPC48883.220ENSPREG00000001589pabpc49583.220Poecilia_reticulata
ENSOCUG00000000562PABPC48899.209ENSPPYG00000001506PABPC49699.209Pongo_abelii
ENSOCUG00000000562PABPC48894.146ENSPCAG00000003341PABPC49694.146Procavia_capensis
ENSOCUG00000000562PABPC48899.368ENSPCOG00000023725-9699.368Propithecus_coquereli
ENSOCUG00000000562PABPC48880.927ENSPCOG00000025882-9091.781Propithecus_coquereli
ENSOCUG00000000562PABPC48898.589ENSPVAG00000002187PABPC49598.589Pteropus_vampyrus
ENSOCUG00000000562PABPC48879.906ENSPNYG00000006134pabpc49580.534Pundamilia_nyererei
ENSOCUG00000000562PABPC48880.564ENSPNAG00000024355pabpc49580.721Pygocentrus_nattereri
ENSOCUG00000000562PABPC48895.253ENSRNOG00000015642Pabpc49695.253Rattus_norvegicus
ENSOCUG00000000562PABPC48893.038ENSRNOG00000028592AABR07035074.19693.038Rattus_norvegicus
ENSOCUG00000000562PABPC48899.367ENSRBIG00000039761PABPC49699.367Rhinopithecus_bieti
ENSOCUG00000000562PABPC48899.367ENSRROG00000033355PABPC49699.367Rhinopithecus_roxellana
ENSOCUG00000000562PABPC48898.892ENSSBOG00000026193PABPC49698.892Saimiri_boliviensis_boliviensis
ENSOCUG00000000562PABPC48888.133ENSSHAG00000018139PABPC49688.133Sarcophilus_harrisii
ENSOCUG00000000562PABPC48881.863ENSSFOG00015023514pabpc49581.759Scleropages_formosus
ENSOCUG00000000562PABPC48879.435ENSSMAG00000009007pabpc49579.435Scophthalmus_maximus
ENSOCUG00000000562PABPC48879.278ENSSDUG00000012683pabpc48891.566Seriola_dumerili
ENSOCUG00000000562PABPC48879.278ENSSLDG00000013025pabpc49191.566Seriola_lalandi_dorsalis
ENSOCUG00000000562PABPC48891.297ENSSARG00000000310PABPC49691.297Sorex_araneus
ENSOCUG00000000562PABPC48887.184ENSSPUG00000003204PABPC49687.184Sphenodon_punctatus
ENSOCUG00000000562PABPC48890.135ENSSPAG00000009252pabpc49579.627Stegastes_partitus
ENSOCUG00000000562PABPC48898.892ENSSSCG00000003660-9698.892Sus_scrofa
ENSOCUG00000000562PABPC47449.907ENSSSCG00000036170-8754.000Sus_scrofa
ENSOCUG00000000562PABPC48887.539ENSTGUG00000001266PABPC49687.539Taeniopygia_guttata
ENSOCUG00000000562PABPC48879.219ENSTRUG00000005907pabpc49579.781Takifugu_rubripes
ENSOCUG00000000562PABPC48876.063ENSTNIG00000016902pabpc48290.385Tetraodon_nigroviridis
ENSOCUG00000000562PABPC48887.654ENSTBEG00000009035PABPC49587.654Tupaia_belangeri
ENSOCUG00000000562PABPC48882.389ENSTTRG00000014340PABPC49586.067Tursiops_truncatus
ENSOCUG00000000562PABPC48898.734ENSUAMG00000000303PABPC49698.734Ursus_americanus
ENSOCUG00000000562PABPC48898.734ENSUMAG00000019585PABPC49998.399Ursus_maritimus
ENSOCUG00000000562PABPC47397.163ENSVPAG00000010041PABPC47397.163Vicugna_pacos
ENSOCUG00000000562PABPC48898.892ENSVVUG00000005215PABPC49698.892Vulpes_vulpes
ENSOCUG00000000562PABPC45497.024ENSXETG00000027221-10097.024Xenopus_tropicalis
ENSOCUG00000000562PABPC48879.589ENSXETG00000010946pabpc49679.589Xenopus_tropicalis
ENSOCUG00000000562PABPC47295.833ENSXCOG00000013190pabpc49689.623Xiphophorus_couchianus
ENSOCUG00000000562PABPC48879.592ENSXMAG00000019007pabpc49580.534Xiphophorus_maculatus

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