EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000001047 (Gene tree)
Gene ID: 100345455
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 99656 bases
Position: chrX:103841982-103941637
Accession: 100345455
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000000907	ResIII	PF04851.15	3.8e-12	1	1
ENSOCUP00000000907	DEAD	PF00270.29	7.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000001047	SMARCA1-201	4332	XM_002720280	ENSOCUP00000000907	1057 (aa)	XP_002720326	G1SEM2

Gene Model

Click here to download ENSOCUG00000001047's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000001047's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000001047	SMARCA1	60	40.242	ENSOCUG00000001628	-	64	40.242
ENSOCUG00000001047	SMARCA1	92	85.479	ENSOCUG00000013042	SMARCA5	99	85.479
ENSOCUG00000001047	SMARCA1	51	48.207	ENSOCUG00000026731	HELLS	64	48.207
ENSOCUG00000001047	SMARCA1	54	43.509	ENSOCUG00000009336	CHD1L	60	43.509

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000001047	SMARCA1	100	96.692	ENSG00000102038	SMARCA1	100	96.692	Homo_sapiens
ENSOCUG00000001047	SMARCA1	92	83.811	ENSAPOG00000016035	smarca5	99	83.696	Acanthochromis_polyacanthus
ENSOCUG00000001047	SMARCA1	100	93.458	ENSAMEG00000015218	SMARCA1	100	93.832	Ailuropoda_melanoleuca
ENSOCUG00000001047	SMARCA1	85	83.942	ENSACIG00000016982	smarca5	99	84.040	Amphilophus_citrinellus
ENSOCUG00000001047	SMARCA1	92	83.811	ENSAOCG00000015578	smarca5	95	83.080	Amphiprion_ocellaris
ENSOCUG00000001047	SMARCA1	92	83.811	ENSAPEG00000011117	smarca5	99	84.198	Amphiprion_percula
ENSOCUG00000001047	SMARCA1	93	83.401	ENSATEG00000012894	smarca5	95	83.080	Anabas_testudineus
ENSOCUG00000001047	SMARCA1	93	92.261	ENSAPLG00000013149	SMARCA1	100	92.261	Anas_platyrhynchos
ENSOCUG00000001047	SMARCA1	97	89.736	ENSACAG00000011376	SMARCA1	95	91.291	Anolis_carolinensis
ENSOCUG00000001047	SMARCA1	98	90.173	ENSANAG00000023098	SMARCA1	98	90.490	Aotus_nancymaae
ENSOCUG00000001047	SMARCA1	96	81.354	ENSACLG00000025356	smarca5	95	83.384	Astatotilapia_calliptera
ENSOCUG00000001047	SMARCA1	98	80.580	ENSAMXG00000005709	smarca5	94	83.897	Astyanax_mexicanus
ENSOCUG00000001047	SMARCA1	88	88.602	ENSAMXG00000011227	smarca1	99	90.061	Astyanax_mexicanus
ENSOCUG00000001047	SMARCA1	99	94.429	ENSBTAG00000002292	SMARCA1	99	93.619	Bos_taurus
ENSOCUG00000001047	SMARCA1	93	63.131	WBGene00002169	isw-1	97	63.131	Caenorhabditis_elegans
ENSOCUG00000001047	SMARCA1	100	96.692	ENSCJAG00000002868	SMARCA1	100	96.692	Callithrix_jacchus
ENSOCUG00000001047	SMARCA1	100	85.209	ENSCAFG00000018673	SMARCA1	99	87.647	Canis_familiaris
ENSOCUG00000001047	SMARCA1	100	96.314	ENSCAFG00020001751	SMARCA1	100	96.314	Canis_lupus_dingo
ENSOCUG00000001047	SMARCA1	100	94.628	ENSCHIG00000009837	SMARCA1	100	94.816	Capra_hircus
ENSOCUG00000001047	SMARCA1	95	96.800	ENSTSYG00000004240	SMARCA1	98	96.232	Carlito_syrichta
ENSOCUG00000001047	SMARCA1	97	95.813	ENSCPOG00000013601	SMARCA1	95	96.119	Cavia_porcellus
ENSOCUG00000001047	SMARCA1	98	92.100	ENSCCAG00000030817	SMARCA1	98	92.411	Cebus_capucinus
ENSOCUG00000001047	SMARCA1	100	95.607	ENSCATG00000015921	SMARCA1	99	96.715	Cercocebus_atys
ENSOCUG00000001047	SMARCA1	98	94.701	ENSCLAG00000002171	SMARCA1	98	95.005	Chinchilla_lanigera
ENSOCUG00000001047	SMARCA1	100	96.786	ENSCSAG00000008460	SMARCA1	100	96.786	Chlorocebus_sabaeus
ENSOCUG00000001047	SMARCA1	97	90.439	ENSCPBG00000001146	SMARCA1	94	92.192	Chrysemys_picta_bellii
ENSOCUG00000001047	SMARCA1	93	73.286	ENSCING00000004110	swi/snf	98	73.286	Ciona_intestinalis
ENSOCUG00000001047	SMARCA1	92	73.544	ENSCSAVG00000004620	-	100	74.388	Ciona_savignyi
ENSOCUG00000001047	SMARCA1	100	96.597	ENSCANG00000007183	SMARCA1	100	96.597	Colobus_angolensis_palliatus
ENSOCUG00000001047	SMARCA1	100	93.201	ENSCGRG00001010776	Smarca1	98	94.524	Cricetulus_griseus_chok1gshd
ENSOCUG00000001047	SMARCA1	93	94.130	ENSCGRG00000015301	Smarca1	98	94.597	Cricetulus_griseus_crigri
ENSOCUG00000001047	SMARCA1	92	83.811	ENSCSEG00000000328	smarca5	95	83.181	Cynoglossus_semilaevis
ENSOCUG00000001047	SMARCA1	93	83.198	ENSCVAG00000008668	smarca5	99	83.746	Cyprinodon_variegatus
ENSOCUG00000001047	SMARCA1	94	84.896	ENSDARG00000012776	smarca1	98	84.896	Danio_rerio
ENSOCUG00000001047	SMARCA1	93	83.046	ENSDARG00000052348	smarca5	94	83.692	Danio_rerio
ENSOCUG00000001047	SMARCA1	98	94.396	ENSDNOG00000004315	SMARCA1	99	94.203	Dasypus_novemcinctus
ENSOCUG00000001047	SMARCA1	98	95.362	ENSDORG00000009270	Smarca1	98	94.690	Dipodomys_ordii
ENSOCUG00000001047	SMARCA1	92	72.410	FBgn0011604	Iswi	98	72.206	Drosophila_melanogaster
ENSOCUG00000001047	SMARCA1	77	93.750	ENSETEG00000017426	SMARCA1	85	93.750	Echinops_telfairi
ENSOCUG00000001047	SMARCA1	93	80.797	ENSEBUG00000001239	smarca5	96	80.797	Eptatretus_burgeri
ENSOCUG00000001047	SMARCA1	94	92.377	ENSEASG00005008218	SMARCA1	100	92.525	Equus_asinus_asinus
ENSOCUG00000001047	SMARCA1	100	96.607	ENSECAG00000012106	SMARCA1	100	96.607	Equus_caballus
ENSOCUG00000001047	SMARCA1	75	96.358	ENSEEUG00000014927	SMARCA1	82	96.358	Erinaceus_europaeus
ENSOCUG00000001047	SMARCA1	96	85.728	ENSELUG00000010515	smarca1	98	86.927	Esox_lucius
ENSOCUG00000001047	SMARCA1	100	96.503	ENSFCAG00000018496	SMARCA1	100	96.503	Felis_catus
ENSOCUG00000001047	SMARCA1	86	92.881	ENSFALG00000000209	SMARCA1	98	92.982	Ficedula_albicollis
ENSOCUG00000001047	SMARCA1	93	95.863	ENSFDAG00000009818	SMARCA1	97	95.863	Fukomys_damarensis
ENSOCUG00000001047	SMARCA1	93	83.503	ENSFHEG00000007687	smarca5	94	83.181	Fundulus_heteroclitus
ENSOCUG00000001047	SMARCA1	94	90.020	ENSGALG00000008431	SMARCA1	96	92.094	Gallus_gallus
ENSOCUG00000001047	SMARCA1	93	83.503	ENSGAFG00000017731	smarca5	95	83.181	Gambusia_affinis
ENSOCUG00000001047	SMARCA1	92	92.798	ENSGAGG00000023575	SMARCA1	100	92.798	Gopherus_agassizii
ENSOCUG00000001047	SMARCA1	69	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSOCUG00000001047	SMARCA1	100	94.045	ENSHGLG00000003080	SMARCA1	100	94.423	Heterocephalus_glaber_female
ENSOCUG00000001047	SMARCA1	94	95.405	ENSHGLG00100001102	SMARCA1	100	95.405	Heterocephalus_glaber_male
ENSOCUG00000001047	SMARCA1	92	83.742	ENSHCOG00000005458	smarca5	95	83.283	Hippocampus_comes
ENSOCUG00000001047	SMARCA1	95	84.950	ENSIPUG00000016905	Smarca1	99	86.721	Ictalurus_punctatus
ENSOCUG00000001047	SMARCA1	97	80.509	ENSIPUG00000005229	SMARCA5	97	82.556	Ictalurus_punctatus
ENSOCUG00000001047	SMARCA1	100	96.503	ENSSTOG00000014524	SMARCA1	100	96.503	Ictidomys_tridecemlineatus
ENSOCUG00000001047	SMARCA1	100	94.073	ENSJJAG00000002593	Smarca1	100	93.503	Jaculus_jaculus
ENSOCUG00000001047	SMARCA1	92	83.640	ENSKMAG00000003777	smarca5	95	83.181	Kryptolebias_marmoratus
ENSOCUG00000001047	SMARCA1	94	82.779	ENSLBEG00000018112	smarca5	96	82.779	Labrus_bergylta
ENSOCUG00000001047	SMARCA1	88	84.047	ENSLBEG00000013295	SMARCA1	100	85.082	Labrus_bergylta
ENSOCUG00000001047	SMARCA1	96	88.955	ENSLACG00000016697	SMARCA1	98	89.790	Latimeria_chalumnae
ENSOCUG00000001047	SMARCA1	94	88.967	ENSLOCG00000014591	smarca1	97	88.967	Lepisosteus_oculatus
ENSOCUG00000001047	SMARCA1	95	95.527	ENSLAFG00000000896	SMARCA1	99	95.713	Loxodonta_africana
ENSOCUG00000001047	SMARCA1	100	96.692	ENSMFAG00000002117	SMARCA1	99	96.715	Macaca_fascicularis
ENSOCUG00000001047	SMARCA1	100	95.607	ENSMMUG00000008818	SMARCA1	99	97.487	Macaca_mulatta
ENSOCUG00000001047	SMARCA1	100	95.607	ENSMNEG00000041768	SMARCA1	99	96.715	Macaca_nemestrina
ENSOCUG00000001047	SMARCA1	100	96.692	ENSMLEG00000043198	SMARCA1	100	96.692	Mandrillus_leucophaeus
ENSOCUG00000001047	SMARCA1	93	83.707	ENSMAMG00000014294	smarca5	95	83.384	Mastacembelus_armatus
ENSOCUG00000001047	SMARCA1	96	81.354	ENSMZEG00005009369	smarca5	95	83.384	Maylandia_zebra
ENSOCUG00000001047	SMARCA1	95	90.345	ENSMGAG00000007042	SMARCA1	99	90.504	Meleagris_gallopavo
ENSOCUG00000001047	SMARCA1	98	92.788	ENSMAUG00000008133	Smarca1	99	94.135	Mesocricetus_auratus
ENSOCUG00000001047	SMARCA1	100	95.936	ENSMICG00000015768	SMARCA1	100	95.936	Microcebus_murinus
ENSOCUG00000001047	SMARCA1	100	94.262	ENSMOCG00000009464	Smarca1	100	94.167	Microtus_ochrogaster
ENSOCUG00000001047	SMARCA1	93	81.459	ENSMMOG00000005547	smarca5	99	81.459	Mola_mola
ENSOCUG00000001047	SMARCA1	98	89.535	ENSMODG00000013187	-	96	91.291	Monodelphis_domestica
ENSOCUG00000001047	SMARCA1	92	83.538	ENSMALG00000002081	smarca5	97	83.385	Monopterus_albus
ENSOCUG00000001047	SMARCA1	100	93.791	MGP_CAROLIEiJ_G0033034	Smarca1	100	93.503	Mus_caroli
ENSOCUG00000001047	SMARCA1	100	93.691	ENSMUSG00000031099	Smarca1	100	93.691	Mus_musculus
ENSOCUG00000001047	SMARCA1	100	93.409	MGP_PahariEiJ_G0031579	Smarca1	100	93.409	Mus_pahari
ENSOCUG00000001047	SMARCA1	100	93.597	MGP_SPRETEiJ_G0034192	Smarca1	100	93.597	Mus_spretus
ENSOCUG00000001047	SMARCA1	100	93.645	ENSMPUG00000017423	SMARCA1	95	94.019	Mustela_putorius_furo
ENSOCUG00000001047	SMARCA1	98	92.395	ENSMLUG00000029614	SMARCA1	98	92.220	Myotis_lucifugus
ENSOCUG00000001047	SMARCA1	98	95.192	ENSNGAG00000006492	Smarca1	99	95.192	Nannospalax_galili
ENSOCUG00000001047	SMARCA1	93	83.809	ENSNBRG00000004463	smarca5	99	83.485	Neolamprologus_brichardi
ENSOCUG00000001047	SMARCA1	98	93.619	ENSNLEG00000015179	SMARCA1	98	96.429	Nomascus_leucogenys
ENSOCUG00000001047	SMARCA1	89	81.618	ENSMEUG00000008819	SMARCA1	99	81.598	Notamacropus_eugenii
ENSOCUG00000001047	SMARCA1	96	94.645	ENSODEG00000012163	SMARCA1	98	93.586	Octodon_degus
ENSOCUG00000001047	SMARCA1	96	81.452	ENSONIG00000009993	smarca5	95	83.485	Oreochromis_niloticus
ENSOCUG00000001047	SMARCA1	92	93.313	ENSOANG00000002862	SMARCA1	100	93.313	Ornithorhynchus_anatinus
ENSOCUG00000001047	SMARCA1	92	83.742	ENSORLG00000021998	smarca5	95	83.283	Oryzias_latipes
ENSOCUG00000001047	SMARCA1	92	83.845	ENSORLG00020017679	smarca5	96	82.482	Oryzias_latipes_hni
ENSOCUG00000001047	SMARCA1	92	83.742	ENSORLG00015017210	smarca5	95	83.181	Oryzias_latipes_hsok
ENSOCUG00000001047	SMARCA1	92	83.742	ENSOMEG00000000086	smarca5	95	83.181	Oryzias_melastigma
ENSOCUG00000001047	SMARCA1	98	95.320	ENSOGAG00000004399	SMARCA1	99	95.320	Otolemur_garnettii
ENSOCUG00000001047	SMARCA1	95	95.755	ENSOARG00000014638	SMARCA1	100	97.347	Ovis_aries
ENSOCUG00000001047	SMARCA1	100	96.692	ENSPPAG00000034647	SMARCA1	100	96.692	Pan_paniscus
ENSOCUG00000001047	SMARCA1	100	96.503	ENSPPRG00000008929	SMARCA1	100	96.503	Panthera_pardus
ENSOCUG00000001047	SMARCA1	95	95.182	ENSPTIG00000000915	SMARCA1	98	95.182	Panthera_tigris_altaica
ENSOCUG00000001047	SMARCA1	100	96.692	ENSPTRG00000049876	SMARCA1	99	96.715	Pan_troglodytes
ENSOCUG00000001047	SMARCA1	100	96.692	ENSPANG00000003871	SMARCA1	100	96.692	Papio_anubis
ENSOCUG00000001047	SMARCA1	89	87.012	ENSPKIG00000013411	smarca1	98	86.826	Paramormyrops_kingsleyae
ENSOCUG00000001047	SMARCA1	95	90.819	ENSPSIG00000010101	SMARCA1	100	92.490	Pelodiscus_sinensis
ENSOCUG00000001047	SMARCA1	98	93.654	ENSPEMG00000017503	Smarca1	99	93.654	Peromyscus_maniculatus_bairdii
ENSOCUG00000001047	SMARCA1	95	91.708	ENSPCIG00000015460	SMARCA1	98	91.792	Phascolarctos_cinereus
ENSOCUG00000001047	SMARCA1	92	83.742	ENSPFOG00000007649	smarca5	95	83.181	Poecilia_formosa
ENSOCUG00000001047	SMARCA1	92	83.742	ENSPLAG00000003363	smarca5	95	83.181	Poecilia_latipinna
ENSOCUG00000001047	SMARCA1	92	83.640	ENSPMEG00000019849	smarca5	95	83.080	Poecilia_mexicana
ENSOCUG00000001047	SMARCA1	92	83.640	ENSPREG00000023250	smarca5	95	83.080	Poecilia_reticulata
ENSOCUG00000001047	SMARCA1	98	92.582	ENSPPYG00000020703	SMARCA1	98	92.891	Pongo_abelii
ENSOCUG00000001047	SMARCA1	76	89.189	ENSPCOG00000020722	SMARCA1	94	91.630	Propithecus_coquereli
ENSOCUG00000001047	SMARCA1	90	94.981	ENSPVAG00000003805	SMARCA1	92	94.981	Pteropus_vampyrus
ENSOCUG00000001047	SMARCA1	56	84.384	ENSPNYG00000012299	smarca5	91	83.514	Pundamilia_nyererei
ENSOCUG00000001047	SMARCA1	100	93.851	ENSRNOG00000003762	Smarca1	100	93.851	Rattus_norvegicus
ENSOCUG00000001047	SMARCA1	100	96.597	ENSRROG00000034167	SMARCA1	100	96.597	Rhinopithecus_roxellana
ENSOCUG00000001047	SMARCA1	93	97.857	ENSSBOG00000020641	SMARCA1	100	97.857	Saimiri_boliviensis_boliviensis
ENSOCUG00000001047	SMARCA1	92	86.228	ENSSHAG00000013518	SMARCA1	99	86.228	Sarcophilus_harrisii
ENSOCUG00000001047	SMARCA1	96	86.404	ENSSFOG00015009043	smarca1	98	87.387	Scleropages_formosus
ENSOCUG00000001047	SMARCA1	94	82.359	ENSSFOG00015016794	smarca5	100	83.299	Scleropages_formosus
ENSOCUG00000001047	SMARCA1	93	82.472	ENSSMAG00000004801	smarca5	95	82.472	Scophthalmus_maximus
ENSOCUG00000001047	SMARCA1	93	83.198	ENSSDUG00000020690	smarca5	95	82.877	Seriola_dumerili
ENSOCUG00000001047	SMARCA1	93	83.198	ENSSLDG00000025190	smarca5	95	82.877	Seriola_lalandi_dorsalis
ENSOCUG00000001047	SMARCA1	85	87.156	ENSSARG00000000842	SMARCA1	91	87.156	Sorex_araneus
ENSOCUG00000001047	SMARCA1	95	90.348	ENSSPUG00000000590	SMARCA1	94	91.897	Sphenodon_punctatus
ENSOCUG00000001047	SMARCA1	93	83.401	ENSSPAG00000002894	smarca5	97	84.044	Stegastes_partitus
ENSOCUG00000001047	SMARCA1	98	96.243	ENSSSCG00000012649	SMARCA1	99	96.243	Sus_scrofa
ENSOCUG00000001047	SMARCA1	93	92.159	ENSTGUG00000003899	-	100	92.159	Taeniopygia_guttata
ENSOCUG00000001047	SMARCA1	93	83.503	ENSTRUG00000014094	smarca5	95	83.181	Takifugu_rubripes
ENSOCUG00000001047	SMARCA1	92	82.787	ENSTNIG00000017717	smarca5	94	82.168	Tetraodon_nigroviridis
ENSOCUG00000001047	SMARCA1	92	88.979	ENSTBEG00000014973	SMARCA1	99	88.979	Tupaia_belangeri
ENSOCUG00000001047	SMARCA1	92	92.777	ENSTTRG00000006168	SMARCA1	99	92.777	Tursiops_truncatus
ENSOCUG00000001047	SMARCA1	100	94.707	ENSUAMG00000020201	SMARCA1	100	95.085	Ursus_americanus
ENSOCUG00000001047	SMARCA1	95	91.502	ENSUMAG00000004073	SMARCA1	97	97.567	Ursus_maritimus
ENSOCUG00000001047	SMARCA1	73	98.377	ENSVPAG00000010492	-	80	98.377	Vicugna_pacos
ENSOCUG00000001047	SMARCA1	95	97.100	ENSVVUG00000008878	SMARCA1	99	97.597	Vulpes_vulpes
ENSOCUG00000001047	SMARCA1	94	89.257	ENSXETG00000001526	smarca1	99	89.257	Xenopus_tropicalis
ENSOCUG00000001047	SMARCA1	93	83.401	ENSXCOG00000011170	smarca5	98	83.080	Xiphophorus_couchianus
ENSOCUG00000001047	SMARCA1	93	83.401	ENSXMAG00000009678	smarca5	97	84.868	Xiphophorus_maculatus