EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000001620 (Gene tree)
Gene ID: 100340569
Gene Symbol: SND1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 413018 bases
Position: chr7:16235653-16648670
Accession: 100340569
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000001391	TUDOR	PF00567.24	2.2e-28	1	1
ENSOCUP00000001391	SNase	PF00565.17	2.7e-69	1	5
ENSOCUP00000001391	SNase	PF00565.17	2.7e-69	2	5
ENSOCUP00000001391	SNase	PF00565.17	2.7e-69	3	5
ENSOCUP00000001391	SNase	PF00565.17	2.7e-69	4	5
ENSOCUP00000001391	SNase	PF00565.17	2.7e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000001622	SND1-201	4589	XM_002712078	ENSOCUP00000001391	910 (aa)	XP_002712124	G1SFS8

Gene Model

Click here to download ENSOCUG00000001620's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000001620's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000001620	SND1	100	97.363	ENSG00000197157	SND1	100	97.363	Homo_sapiens
ENSOCUG00000001620	SND1	100	83.114	ENSAPOG00000017599	snd1	100	83.114	Acanthochromis_polyacanthus
ENSOCUG00000001620	SND1	100	97.149	ENSAMEG00000004664	SND1	94	97.149	Ailuropoda_melanoleuca
ENSOCUG00000001620	SND1	98	81.411	ENSACIG00000003551	snd1	100	80.461	Amphilophus_citrinellus
ENSOCUG00000001620	SND1	100	82.895	ENSAOCG00000014166	snd1	100	82.895	Amphiprion_ocellaris
ENSOCUG00000001620	SND1	100	82.895	ENSAPEG00000007067	snd1	100	82.895	Amphiprion_percula
ENSOCUG00000001620	SND1	98	82.235	ENSATEG00000018475	snd1	89	82.235	Anabas_testudineus
ENSOCUG00000001620	SND1	100	97.802	ENSANAG00000034463	SND1	100	97.802	Aotus_nancymaae
ENSOCUG00000001620	SND1	99	82.747	ENSACLG00000022897	snd1	99	82.747	Astatotilapia_calliptera
ENSOCUG00000001620	SND1	99	83.718	ENSAMXG00000016318	snd1	99	83.718	Astyanax_mexicanus
ENSOCUG00000001620	SND1	100	97.363	ENSBTAG00000010692	SND1	100	97.363	Bos_taurus
ENSOCUG00000001620	SND1	98	46.565	WBGene00006626	tsn-1	98	47.162	Caenorhabditis_elegans
ENSOCUG00000001620	SND1	100	97.582	ENSCJAG00000017668	SND1	100	97.582	Callithrix_jacchus
ENSOCUG00000001620	SND1	100	97.582	ENSCAFG00000001700	SND1	100	97.582	Canis_familiaris
ENSOCUG00000001620	SND1	100	97.582	ENSCAFG00020021639	SND1	100	97.582	Canis_lupus_dingo
ENSOCUG00000001620	SND1	100	97.692	ENSCHIG00000023390	SND1	100	97.692	Capra_hircus
ENSOCUG00000001620	SND1	73	97.535	ENSTSYG00000004979	SND1	96	97.535	Carlito_syrichta
ENSOCUG00000001620	SND1	99	84.444	ENSCAPG00000010677	SND1	98	84.444	Cavia_aperea
ENSOCUG00000001620	SND1	100	97.363	ENSCPOG00000006251	SND1	100	97.363	Cavia_porcellus
ENSOCUG00000001620	SND1	100	97.692	ENSCCAG00000036847	SND1	100	97.692	Cebus_capucinus
ENSOCUG00000001620	SND1	100	97.582	ENSCATG00000035214	SND1	100	97.582	Cercocebus_atys
ENSOCUG00000001620	SND1	100	97.473	ENSCLAG00000011796	SND1	100	97.473	Chinchilla_lanigera
ENSOCUG00000001620	SND1	100	97.582	ENSCSAG00000010182	SND1	100	97.582	Chlorocebus_sabaeus
ENSOCUG00000001620	SND1	77	86.275	ENSCHOG00000002218	SND1	86	86.275	Choloepus_hoffmanni
ENSOCUG00000001620	SND1	100	91.319	ENSCPBG00000018094	SND1	100	91.319	Chrysemys_picta_bellii
ENSOCUG00000001620	SND1	98	57.254	ENSCING00000000524	-	98	57.254	Ciona_intestinalis
ENSOCUG00000001620	SND1	99	58.040	ENSCSAVG00000008807	-	99	58.040	Ciona_savignyi
ENSOCUG00000001620	SND1	100	97.582	ENSCANG00000035119	SND1	100	97.582	Colobus_angolensis_palliatus
ENSOCUG00000001620	SND1	99	96.210	ENSCGRG00001022514	Snd1	100	96.044	Cricetulus_griseus_chok1gshd
ENSOCUG00000001620	SND1	97	96.154	ENSCGRG00000012277	Snd1	99	96.154	Cricetulus_griseus_crigri
ENSOCUG00000001620	SND1	98	83.669	ENSCSEG00000008661	snd1	98	83.669	Cynoglossus_semilaevis
ENSOCUG00000001620	SND1	100	83.333	ENSCVAG00000010316	snd1	100	82.989	Cyprinodon_variegatus
ENSOCUG00000001620	SND1	100	83.352	ENSDARG00000006766	snd1	99	85.088	Danio_rerio
ENSOCUG00000001620	SND1	97	94.589	ENSDNOG00000006795	SND1	100	94.589	Dasypus_novemcinctus
ENSOCUG00000001620	SND1	100	97.473	ENSDORG00000000336	Snd1	100	97.473	Dipodomys_ordii
ENSOCUG00000001620	SND1	98	51.135	FBgn0035121	Tudor-SN	99	50.637	Drosophila_melanogaster
ENSOCUG00000001620	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSOCUG00000001620	SND1	57	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSOCUG00000001620	SND1	100	95.896	ENSEASG00005008513	SND1	100	95.896	Equus_asinus_asinus
ENSOCUG00000001620	SND1	100	97.473	ENSECAG00000011451	SND1	100	97.473	Equus_caballus
ENSOCUG00000001620	SND1	99	85.953	ENSEEUG00000014737	SND1	100	85.934	Erinaceus_europaeus
ENSOCUG00000001620	SND1	99	81.579	ENSELUG00000001805	snd1	96	81.579	Esox_lucius
ENSOCUG00000001620	SND1	100	97.582	ENSFCAG00000008289	SND1	100	97.582	Felis_catus
ENSOCUG00000001620	SND1	100	97.473	ENSFDAG00000015881	SND1	100	97.473	Fukomys_damarensis
ENSOCUG00000001620	SND1	99	81.505	ENSFHEG00000004093	snd1	99	83.181	Fundulus_heteroclitus
ENSOCUG00000001620	SND1	64	74.294	ENSGMOG00000018932	snd1	66	74.294	Gadus_morhua
ENSOCUG00000001620	SND1	99	83.626	ENSGAFG00000008421	snd1	99	84.442	Gambusia_affinis
ENSOCUG00000001620	SND1	100	53.312	ENSGACG00000019793	snd1	100	53.312	Gasterosteus_aculeatus
ENSOCUG00000001620	SND1	100	97.582	ENSGGOG00000009614	SND1	100	97.582	Gorilla_gorilla
ENSOCUG00000001620	SND1	99	82.930	ENSHBUG00000019135	snd1	99	82.930	Haplochromis_burtoni
ENSOCUG00000001620	SND1	100	97.253	ENSHGLG00000003618	SND1	100	97.253	Heterocephalus_glaber_female
ENSOCUG00000001620	SND1	99	96.796	ENSHGLG00100012449	SND1	100	96.796	Heterocephalus_glaber_male
ENSOCUG00000001620	SND1	99	82.527	ENSHCOG00000005266	snd1	99	82.527	Hippocampus_comes
ENSOCUG00000001620	SND1	100	82.604	ENSIPUG00000013279	snd1	100	82.604	Ictalurus_punctatus
ENSOCUG00000001620	SND1	100	97.363	ENSSTOG00000002140	SND1	100	97.363	Ictidomys_tridecemlineatus
ENSOCUG00000001620	SND1	100	97.582	ENSJJAG00000009561	Snd1	100	97.582	Jaculus_jaculus
ENSOCUG00000001620	SND1	100	83.333	ENSKMAG00000016997	snd1	100	83.333	Kryptolebias_marmoratus
ENSOCUG00000001620	SND1	100	84.396	ENSLBEG00000013563	snd1	100	82.018	Labrus_bergylta
ENSOCUG00000001620	SND1	99	84.675	ENSLOCG00000015537	snd1	100	83.931	Lepisosteus_oculatus
ENSOCUG00000001620	SND1	100	96.703	ENSLAFG00000009696	SND1	100	96.703	Loxodonta_africana
ENSOCUG00000001620	SND1	100	97.582	ENSMFAG00000038114	SND1	100	97.582	Macaca_fascicularis
ENSOCUG00000001620	SND1	100	97.582	ENSMMUG00000015432	SND1	100	97.582	Macaca_mulatta
ENSOCUG00000001620	SND1	100	97.582	ENSMNEG00000039808	SND1	100	97.627	Macaca_nemestrina
ENSOCUG00000001620	SND1	100	97.473	ENSMLEG00000029040	SND1	100	97.514	Mandrillus_leucophaeus
ENSOCUG00000001620	SND1	98	83.929	ENSMAMG00000011739	snd1	98	83.929	Mastacembelus_armatus
ENSOCUG00000001620	SND1	99	82.747	ENSMZEG00005005681	snd1	99	82.747	Maylandia_zebra
ENSOCUG00000001620	SND1	100	97.582	ENSMICG00000000097	SND1	100	97.582	Microcebus_murinus
ENSOCUG00000001620	SND1	100	96.703	ENSMOCG00000005040	Snd1	100	96.703	Microtus_ochrogaster
ENSOCUG00000001620	SND1	100	82.675	ENSMMOG00000001795	snd1	100	82.675	Mola_mola
ENSOCUG00000001620	SND1	99	94.649	ENSMODG00000015182	SND1	100	94.615	Monodelphis_domestica
ENSOCUG00000001620	SND1	100	82.785	ENSMALG00000012071	snd1	100	82.785	Monopterus_albus
ENSOCUG00000001620	SND1	100	96.593	MGP_CAROLIEiJ_G0028159	Snd1	100	96.593	Mus_caroli
ENSOCUG00000001620	SND1	100	96.374	ENSMUSG00000001424	Snd1	100	96.374	Mus_musculus
ENSOCUG00000001620	SND1	100	96.593	MGP_PahariEiJ_G0021917	Snd1	100	96.796	Mus_pahari
ENSOCUG00000001620	SND1	100	96.593	MGP_SPRETEiJ_G0029159	Snd1	100	96.593	Mus_spretus
ENSOCUG00000001620	SND1	100	97.033	ENSMPUG00000006545	SND1	100	97.033	Mustela_putorius_furo
ENSOCUG00000001620	SND1	97	95.642	ENSMLUG00000017130	SND1	99	95.642	Myotis_lucifugus
ENSOCUG00000001620	SND1	100	96.923	ENSNGAG00000011186	Snd1	100	96.923	Nannospalax_galili
ENSOCUG00000001620	SND1	99	82.637	ENSNBRG00000006681	snd1	99	82.637	Neolamprologus_brichardi
ENSOCUG00000001620	SND1	100	97.473	ENSNLEG00000012263	SND1	100	97.627	Nomascus_leucogenys
ENSOCUG00000001620	SND1	93	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSOCUG00000001620	SND1	100	97.582	ENSODEG00000011502	SND1	100	97.582	Octodon_degus
ENSOCUG00000001620	SND1	99	82.637	ENSONIG00000011481	snd1	97	82.637	Oreochromis_niloticus
ENSOCUG00000001620	SND1	98	93.919	ENSOANG00000000817	SND1	99	92.731	Ornithorhynchus_anatinus
ENSOCUG00000001620	SND1	98	83.240	ENSORLG00000015201	snd1	100	82.237	Oryzias_latipes
ENSOCUG00000001620	SND1	98	83.352	ENSORLG00020013991	snd1	100	82.346	Oryzias_latipes_hni
ENSOCUG00000001620	SND1	98	83.352	ENSORLG00015012436	snd1	100	82.346	Oryzias_latipes_hsok
ENSOCUG00000001620	SND1	100	82.456	ENSOMEG00000006406	snd1	99	82.456	Oryzias_melastigma
ENSOCUG00000001620	SND1	100	97.039	ENSOGAG00000013356	SND1	94	97.039	Otolemur_garnettii
ENSOCUG00000001620	SND1	97	94.915	ENSOARG00000002149	SND1	100	94.915	Ovis_aries
ENSOCUG00000001620	SND1	100	97.473	ENSPPAG00000042947	SND1	100	97.473	Pan_paniscus
ENSOCUG00000001620	SND1	100	97.582	ENSPPRG00000004494	SND1	100	97.582	Panthera_pardus
ENSOCUG00000001620	SND1	100	97.473	ENSPTIG00000014214	SND1	100	97.473	Panthera_tigris_altaica
ENSOCUG00000001620	SND1	100	97.473	ENSPTRG00000023911	SND1	100	97.473	Pan_troglodytes
ENSOCUG00000001620	SND1	97	97.624	ENSPANG00000011997	SND1	99	97.624	Papio_anubis
ENSOCUG00000001620	SND1	99	80.926	ENSPKIG00000023494	snd1	100	80.196	Paramormyrops_kingsleyae
ENSOCUG00000001620	SND1	92	82.754	ENSPMGG00000003629	snd1	100	82.754	Periophthalmus_magnuspinnatus
ENSOCUG00000001620	SND1	100	96.813	ENSPEMG00000010240	Snd1	100	96.813	Peromyscus_maniculatus_bairdii
ENSOCUG00000001620	SND1	97	73.107	ENSPMAG00000007915	-	99	73.107	Petromyzon_marinus
ENSOCUG00000001620	SND1	99	95.095	ENSPCIG00000011561	SND1	100	95.055	Phascolarctos_cinereus
ENSOCUG00000001620	SND1	99	83.077	ENSPFOG00000001557	snd1	99	83.077	Poecilia_formosa
ENSOCUG00000001620	SND1	99	83.077	ENSPLAG00000018459	snd1	97	83.077	Poecilia_latipinna
ENSOCUG00000001620	SND1	99	83.516	ENSPMEG00000006803	snd1	99	83.516	Poecilia_mexicana
ENSOCUG00000001620	SND1	99	83.407	ENSPREG00000002189	snd1	99	83.407	Poecilia_reticulata
ENSOCUG00000001620	SND1	92	97.226	ENSPPYG00000017972	SND1	100	97.146	Pongo_abelii
ENSOCUG00000001620	SND1	99	85.284	ENSPCAG00000011305	SND1	100	85.275	Procavia_capensis
ENSOCUG00000001620	SND1	100	97.363	ENSPCOG00000026791	SND1	100	97.401	Propithecus_coquereli
ENSOCUG00000001620	SND1	100	95.495	ENSPVAG00000013945	SND1	100	95.495	Pteropus_vampyrus
ENSOCUG00000001620	SND1	99	82.747	ENSPNYG00000000932	snd1	99	82.747	Pundamilia_nyererei
ENSOCUG00000001620	SND1	100	83.042	ENSPNAG00000001206	snd1	100	83.042	Pygocentrus_nattereri
ENSOCUG00000001620	SND1	99	96.366	ENSRNOG00000031173	Snd1	100	95.480	Rattus_norvegicus
ENSOCUG00000001620	SND1	73	97.556	ENSRBIG00000027782	-	93	97.719	Rhinopithecus_bieti
ENSOCUG00000001620	SND1	100	97.582	ENSRROG00000033020	SND1	100	97.582	Rhinopithecus_roxellana
ENSOCUG00000001620	SND1	100	97.582	ENSSBOG00000032461	SND1	100	97.582	Saimiri_boliviensis_boliviensis
ENSOCUG00000001620	SND1	98	92.342	ENSSHAG00000015359	SND1	100	92.342	Sarcophilus_harrisii
ENSOCUG00000001620	SND1	100	81.828	ENSSFOG00015001103	snd1	100	81.828	Scleropages_formosus
ENSOCUG00000001620	SND1	98	82.998	ENSSMAG00000001932	snd1	94	81.758	Scophthalmus_maximus
ENSOCUG00000001620	SND1	100	82.895	ENSSDUG00000002699	snd1	94	82.895	Seriola_dumerili
ENSOCUG00000001620	SND1	100	75.658	ENSSLDG00000001950	snd1	100	75.658	Seriola_lalandi_dorsalis
ENSOCUG00000001620	SND1	86	96.226	ENSSARG00000004877	SND1	92	96.226	Sorex_araneus
ENSOCUG00000001620	SND1	73	86.783	ENSSPUG00000017586	SND1	96	86.783	Sphenodon_punctatus
ENSOCUG00000001620	SND1	76	84.095	ENSSPAG00000021398	snd1	98	84.095	Stegastes_partitus
ENSOCUG00000001620	SND1	100	97.582	ENSSSCG00000016590	SND1	100	97.582	Sus_scrofa
ENSOCUG00000001620	SND1	100	82.237	ENSTRUG00000014067	snd1	100	82.237	Takifugu_rubripes
ENSOCUG00000001620	SND1	100	82.785	ENSTNIG00000011019	snd1	98	85.427	Tetraodon_nigroviridis
ENSOCUG00000001620	SND1	93	91.627	ENSTBEG00000003999	SND1	100	91.627	Tupaia_belangeri
ENSOCUG00000001620	SND1	100	93.187	ENSTTRG00000006059	SND1	100	93.187	Tursiops_truncatus
ENSOCUG00000001620	SND1	71	88.312	ENSUAMG00000002820	-	90	88.312	Ursus_americanus
ENSOCUG00000001620	SND1	91	98.289	ENSUAMG00000005604	-	93	98.289	Ursus_americanus
ENSOCUG00000001620	SND1	100	97.582	ENSUMAG00000005960	SND1	100	97.582	Ursus_maritimus
ENSOCUG00000001620	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSOCUG00000001620	SND1	100	97.363	ENSVVUG00000007226	SND1	100	97.363	Vulpes_vulpes
ENSOCUG00000001620	SND1	97	84.633	ENSXETG00000023043	snd1	100	84.554	Xenopus_tropicalis
ENSOCUG00000001620	SND1	92	80.879	ENSXCOG00000013629	snd1	99	80.879	Xiphophorus_couchianus
ENSOCUG00000001620	SND1	99	83.626	ENSXMAG00000011469	snd1	99	83.626	Xiphophorus_maculatus