EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000001861 (Gene tree)
Gene ID: 100351589
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 123781 bases
Position: chr14:35724624-35848404
Accession: 100351589
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000001608	XRN_N	PF03159.18	1.4e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000001868	XRN1-201	10385	XM_002716565	ENSOCUP00000001608	1740 (aa)	XP_002716611	G1SGA9

Gene Model

Click here to download ENSOCUG00000001861's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03008	Ribosome biogenesis in eukaryotes	KEGG
ocu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000001861's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000001861	XRN1	100	90.029	ENSG00000114127	XRN1	100	99.394	Homo_sapiens
ENSOCUG00000001861	XRN1	93	73.491	ENSAPOG00000000622	xrn1	100	70.634	Acanthochromis_polyacanthus
ENSOCUG00000001861	XRN1	100	91.023	ENSAMEG00000012538	XRN1	100	91.195	Ailuropoda_melanoleuca
ENSOCUG00000001861	XRN1	93	73.008	ENSACIG00000001057	xrn1	98	72.927	Amphilophus_citrinellus
ENSOCUG00000001861	XRN1	94	71.611	ENSAOCG00000014097	xrn1	86	85.246	Amphiprion_ocellaris
ENSOCUG00000001861	XRN1	100	60.950	ENSAPEG00000006620	xrn1	91	72.851	Amphiprion_percula
ENSOCUG00000001861	XRN1	92	70.565	ENSATEG00000009752	xrn1	99	71.360	Anabas_testudineus
ENSOCUG00000001861	XRN1	99	76.023	ENSAPLG00000004905	XRN1	100	75.965	Anas_platyrhynchos
ENSOCUG00000001861	XRN1	100	72.753	ENSACAG00000004985	XRN1	100	72.697	Anolis_carolinensis
ENSOCUG00000001861	XRN1	100	90.086	ENSANAG00000029013	XRN1	99	95.940	Aotus_nancymaae
ENSOCUG00000001861	XRN1	100	59.790	ENSACLG00000004806	xrn1	99	59.934	Astatotilapia_calliptera
ENSOCUG00000001861	XRN1	99	59.977	ENSAMXG00000019370	xrn1	95	95.146	Astyanax_mexicanus
ENSOCUG00000001861	XRN1	100	89.450	ENSBTAG00000011524	XRN1	100	89.450	Bos_taurus
ENSOCUG00000001861	XRN1	69	38.800	WBGene00012730	xrn-1	80	38.171	Caenorhabditis_elegans
ENSOCUG00000001861	XRN1	100	89.742	ENSCJAG00000001872	XRN1	100	89.742	Callithrix_jacchus
ENSOCUG00000001861	XRN1	100	91.347	ENSCAFG00000007783	XRN1	100	91.519	Canis_familiaris
ENSOCUG00000001861	XRN1	100	91.404	ENSCAFG00020009120	XRN1	99	94.571	Canis_lupus_dingo
ENSOCUG00000001861	XRN1	99	90.586	ENSCHIG00000019192	XRN1	99	90.586	Capra_hircus
ENSOCUG00000001861	XRN1	100	89.226	ENSTSYG00000002705	XRN1	100	89.226	Carlito_syrichta
ENSOCUG00000001861	XRN1	54	77.280	ENSCAPG00000004604	-	99	77.280	Cavia_aperea
ENSOCUG00000001861	XRN1	100	90.430	ENSCCAG00000034800	XRN1	99	96.830	Cebus_capucinus
ENSOCUG00000001861	XRN1	100	90.258	ENSCATG00000041794	XRN1	100	90.430	Cercocebus_atys
ENSOCUG00000001861	XRN1	100	86.991	ENSCLAG00000001451	XRN1	99	96.513	Chinchilla_lanigera
ENSOCUG00000001861	XRN1	100	90.430	ENSCSAG00000011265	XRN1	100	90.602	Chlorocebus_sabaeus
ENSOCUG00000001861	XRN1	56	97.403	ENSCHOG00000013961	-	59	97.403	Choloepus_hoffmanni
ENSOCUG00000001861	XRN1	69	44.992	ENSCSAVG00000008584	-	99	44.804	Ciona_savignyi
ENSOCUG00000001861	XRN1	100	90.258	ENSCANG00000037495	XRN1	99	96.830	Colobus_angolensis_palliatus
ENSOCUG00000001861	XRN1	100	88.245	ENSCGRG00001019411	Xrn1	99	95.721	Cricetulus_griseus_chok1gshd
ENSOCUG00000001861	XRN1	100	88.245	ENSCGRG00000012464	Xrn1	99	95.721	Cricetulus_griseus_crigri
ENSOCUG00000001861	XRN1	93	67.664	ENSCSEG00000021285	xrn1	94	96.154	Cynoglossus_semilaevis
ENSOCUG00000001861	XRN1	65	68.102	ENSCVAG00000013089	xrn1	99	72.792	Cyprinodon_variegatus
ENSOCUG00000001861	XRN1	99	62.571	ENSDARG00000091652	xrn1	98	79.747	Danio_rerio
ENSOCUG00000001861	XRN1	100	86.971	ENSDORG00000013833	Xrn1	100	86.971	Dipodomys_ordii
ENSOCUG00000001861	XRN1	73	40.078	FBgn0020261	pcm	76	39.753	Drosophila_melanogaster
ENSOCUG00000001861	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	98.387	Echinops_telfairi
ENSOCUG00000001861	XRN1	100	89.971	ENSEASG00005002687	XRN1	99	96.038	Equus_asinus_asinus
ENSOCUG00000001861	XRN1	100	88.940	ENSECAG00000008301	XRN1	100	89.112	Equus_caballus
ENSOCUG00000001861	XRN1	92	83.252	ENSEEUG00000011323	XRN1	92	83.252	Erinaceus_europaeus
ENSOCUG00000001861	XRN1	100	60.625	ENSELUG00000000169	xrn1	100	60.346	Esox_lucius
ENSOCUG00000001861	XRN1	100	85.624	ENSFCAG00000027589	XRN1	99	96.703	Felis_catus
ENSOCUG00000001861	XRN1	100	74.512	ENSFALG00000007021	XRN1	100	74.485	Ficedula_albicollis
ENSOCUG00000001861	XRN1	100	89.290	ENSFDAG00000020494	XRN1	99	95.880	Fukomys_damarensis
ENSOCUG00000001861	XRN1	82	68.839	ENSGMOG00000006396	xrn1	83	68.338	Gadus_morhua
ENSOCUG00000001861	XRN1	100	74.888	ENSGALG00000002706	XRN1	100	74.833	Gallus_gallus
ENSOCUG00000001861	XRN1	100	59.955	ENSGACG00000014328	xrn1	100	60.135	Gasterosteus_aculeatus
ENSOCUG00000001861	XRN1	94	78.941	ENSGAGG00000017535	XRN1	99	78.881	Gopherus_agassizii
ENSOCUG00000001861	XRN1	100	90.430	ENSGGOG00000008047	XRN1	100	90.430	Gorilla_gorilla
ENSOCUG00000001861	XRN1	94	70.681	ENSHBUG00000005908	xrn1	98	73.196	Haplochromis_burtoni
ENSOCUG00000001861	XRN1	100	89.697	ENSHGLG00000014476	XRN1	99	96.197	Heterocephalus_glaber_female
ENSOCUG00000001861	XRN1	100	89.754	ENSHGLG00100015130	XRN1	99	96.197	Heterocephalus_glaber_male
ENSOCUG00000001861	XRN1	94	71.406	ENSHCOG00000014062	xrn1	99	71.224	Hippocampus_comes
ENSOCUG00000001861	XRN1	99	61.242	ENSIPUG00000015229	xrn1	99	61.242	Ictalurus_punctatus
ENSOCUG00000001861	XRN1	100	91.227	ENSSTOG00000013552	XRN1	99	96.830	Ictidomys_tridecemlineatus
ENSOCUG00000001861	XRN1	99	87.159	ENSJJAG00000010863	Xrn1	99	94.611	Jaculus_jaculus
ENSOCUG00000001861	XRN1	94	61.048	ENSKMAG00000021356	xrn1	94	76.533	Kryptolebias_marmoratus
ENSOCUG00000001861	XRN1	94	70.676	ENSLBEG00000018656	xrn1	97	97.087	Labrus_bergylta
ENSOCUG00000001861	XRN1	100	69.813	ENSLACG00000009020	XRN1	100	69.870	Latimeria_chalumnae
ENSOCUG00000001861	XRN1	100	64.892	ENSLOCG00000007944	xrn1	100	64.892	Lepisosteus_oculatus
ENSOCUG00000001861	XRN1	61	95.884	ENSLAFG00000015426	XRN1	100	95.884	Loxodonta_africana
ENSOCUG00000001861	XRN1	100	90.372	ENSMFAG00000032599	XRN1	100	90.544	Macaca_fascicularis
ENSOCUG00000001861	XRN1	100	90.315	ENSMMUG00000014038	XRN1	100	90.487	Macaca_mulatta
ENSOCUG00000001861	XRN1	100	90.086	ENSMNEG00000034217	XRN1	100	90.258	Macaca_nemestrina
ENSOCUG00000001861	XRN1	92	71.248	ENSMAMG00000013219	xrn1	94	77.160	Mastacembelus_armatus
ENSOCUG00000001861	XRN1	100	59.735	ENSMZEG00005015099	xrn1	99	59.879	Maylandia_zebra
ENSOCUG00000001861	XRN1	99	74.870	ENSMGAG00000006333	XRN1	100	74.813	Meleagris_gallopavo
ENSOCUG00000001861	XRN1	100	90.561	ENSMICG00000048948	XRN1	96	99.029	Microcebus_murinus
ENSOCUG00000001861	XRN1	56	94.770	ENSMOCG00000008665	Xrn1	99	94.770	Microtus_ochrogaster
ENSOCUG00000001861	XRN1	100	80.343	ENSMODG00000021236	XRN1	100	80.286	Monodelphis_domestica
ENSOCUG00000001861	XRN1	94	67.347	ENSMALG00000004098	xrn1	98	67.347	Monopterus_albus
ENSOCUG00000001861	XRN1	100	79.107	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSOCUG00000001861	XRN1	100	86.353	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSOCUG00000001861	XRN1	100	86.468	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSOCUG00000001861	XRN1	100	86.411	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSOCUG00000001861	XRN1	100	89.794	ENSMPUG00000012040	XRN1	100	89.966	Mustela_putorius_furo
ENSOCUG00000001861	XRN1	100	88.309	ENSMLUG00000016885	XRN1	100	88.309	Myotis_lucifugus
ENSOCUG00000001861	XRN1	56	91.587	ENSNGAG00000023964	Xrn1	99	91.587	Nannospalax_galili
ENSOCUG00000001861	XRN1	100	90.029	ENSNLEG00000004726	XRN1	100	90.258	Nomascus_leucogenys
ENSOCUG00000001861	XRN1	71	97.938	ENSMEUG00000014473	-	73	98.058	Notamacropus_eugenii
ENSOCUG00000001861	XRN1	79	86.080	ENSOPRG00000007337	-	79	86.080	Ochotona_princeps
ENSOCUG00000001861	XRN1	100	60.996	ENSONIG00000016673	xrn1	99	64.119	Oreochromis_niloticus
ENSOCUG00000001861	XRN1	92	75.741	ENSOANG00000006735	XRN1	100	75.679	Ornithorhynchus_anatinus
ENSOCUG00000001861	XRN1	100	61.370	ENSORLG00000013005	xrn1	100	60.306	Oryzias_latipes
ENSOCUG00000001861	XRN1	94	73.473	ENSORLG00020005559	xrn1	98	73.136	Oryzias_latipes_hni
ENSOCUG00000001861	XRN1	100	61.145	ENSORLG00015022523	xrn1	96	72.975	Oryzias_latipes_hsok
ENSOCUG00000001861	XRN1	90	73.654	ENSOMEG00000015397	xrn1	99	73.491	Oryzias_melastigma
ENSOCUG00000001861	XRN1	100	88.131	ENSOGAG00000000170	XRN1	100	88.131	Otolemur_garnettii
ENSOCUG00000001861	XRN1	99	91.791	ENSOARG00000006343	XRN1	99	91.791	Ovis_aries
ENSOCUG00000001861	XRN1	100	90.258	ENSPPAG00000010180	XRN1	100	90.258	Pan_paniscus
ENSOCUG00000001861	XRN1	100	89.175	ENSPPRG00000007125	XRN1	100	89.347	Panthera_pardus
ENSOCUG00000001861	XRN1	100	89.175	ENSPTIG00000021081	XRN1	100	89.347	Panthera_tigris_altaica
ENSOCUG00000001861	XRN1	100	90.315	ENSPTRG00000015482	XRN1	100	90.315	Pan_troglodytes
ENSOCUG00000001861	XRN1	100	90.430	ENSPANG00000010638	XRN1	100	90.430	Papio_anubis
ENSOCUG00000001861	XRN1	100	76.587	ENSPSIG00000018050	XRN1	100	76.701	Pelodiscus_sinensis
ENSOCUG00000001861	XRN1	55	78.425	ENSPMGG00000002648	xrn1	98	79.365	Periophthalmus_magnuspinnatus
ENSOCUG00000001861	XRN1	56	95.721	ENSPEMG00000020610	Xrn1	99	95.721	Peromyscus_maniculatus_bairdii
ENSOCUG00000001861	XRN1	63	50.759	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSOCUG00000001861	XRN1	95	88.161	ENSPCIG00000028735	XRN1	99	90.106	Phascolarctos_cinereus
ENSOCUG00000001861	XRN1	90	63.369	ENSPFOG00000013932	xrn1	99	63.488	Poecilia_formosa
ENSOCUG00000001861	XRN1	90	62.981	ENSPLAG00000021653	xrn1	99	63.772	Poecilia_latipinna
ENSOCUG00000001861	XRN1	89	63.141	ENSPMEG00000003076	xrn1	95	64.046	Poecilia_mexicana
ENSOCUG00000001861	XRN1	96	70.048	ENSPREG00000021147	xrn1	99	69.865	Poecilia_reticulata
ENSOCUG00000001861	XRN1	100	90.315	ENSPPYG00000014172	XRN1	100	90.315	Pongo_abelii
ENSOCUG00000001861	XRN1	91	79.633	ENSPCAG00000005638	XRN1	99	79.658	Procavia_capensis
ENSOCUG00000001861	XRN1	100	90.774	ENSPCOG00000013089	XRN1	99	97.352	Propithecus_coquereli
ENSOCUG00000001861	XRN1	96	92.368	ENSPVAG00000016265	XRN1	96	92.368	Pteropus_vampyrus
ENSOCUG00000001861	XRN1	94	71.632	ENSPNYG00000010570	xrn1	99	71.632	Pundamilia_nyererei
ENSOCUG00000001861	XRN1	99	59.843	ENSPNAG00000023531	xrn1	99	59.652	Pygocentrus_nattereri
ENSOCUG00000001861	XRN1	100	86.869	ENSRNOG00000042951	Xrn1	100	86.869	Rattus_norvegicus
ENSOCUG00000001861	XRN1	100	89.742	ENSRBIG00000041227	XRN1	100	89.857	Rhinopithecus_bieti
ENSOCUG00000001861	XRN1	65	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSOCUG00000001861	XRN1	100	89.628	ENSSBOG00000029561	XRN1	100	89.628	Saimiri_boliviensis_boliviensis
ENSOCUG00000001861	XRN1	99	79.884	ENSSHAG00000016207	XRN1	100	79.827	Sarcophilus_harrisii
ENSOCUG00000001861	XRN1	100	61.477	ENSSFOG00015024211	xrn1	100	61.530	Scleropages_formosus
ENSOCUG00000001861	XRN1	91	72.940	ENSSMAG00000016534	xrn1	97	72.859	Scophthalmus_maximus
ENSOCUG00000001861	XRN1	88	72.313	ENSSDUG00000010306	xrn1	97	72.801	Seriola_dumerili
ENSOCUG00000001861	XRN1	92	71.873	ENSSLDG00000021543	xrn1	99	72.351	Seriola_lalandi_dorsalis
ENSOCUG00000001861	XRN1	65	85.315	ENSSARG00000007741	-	82	85.315	Sorex_araneus
ENSOCUG00000001861	XRN1	100	75.725	ENSTGUG00000008498	XRN1	100	75.696	Taeniopygia_guttata
ENSOCUG00000001861	XRN1	94	70.231	ENSTRUG00000004895	xrn1	96	77.944	Takifugu_rubripes
ENSOCUG00000001861	XRN1	100	57.472	ENSTNIG00000017615	xrn1	100	57.583	Tetraodon_nigroviridis
ENSOCUG00000001861	XRN1	85	97.574	ENSTBEG00000003256	XRN1	84	97.574	Tupaia_belangeri
ENSOCUG00000001861	XRN1	100	85.542	ENSTTRG00000012914	XRN1	100	85.542	Tursiops_truncatus
ENSOCUG00000001861	XRN1	100	89.977	ENSUAMG00000001608	XRN1	99	94.571	Ursus_americanus
ENSOCUG00000001861	XRN1	100	92.554	ENSUMAG00000013625	XRN1	100	92.726	Ursus_maritimus
ENSOCUG00000001861	XRN1	100	86.640	ENSVPAG00000004690	XRN1	100	86.812	Vicugna_pacos
ENSOCUG00000001861	XRN1	100	91.461	ENSVVUG00000024461	XRN1	98	100.000	Vulpes_vulpes
ENSOCUG00000001861	XRN1	100	68.850	ENSXETG00000000619	xrn1	97	89.516	Xenopus_tropicalis
ENSOCUG00000001861	XRN1	94	72.653	ENSXCOG00000007917	xrn1	97	73.061	Xiphophorus_couchianus
ENSOCUG00000001861	XRN1	90	72.490	ENSXMAG00000018320	xrn1	98	72.490	Xiphophorus_maculatus