EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000004614 (Gene tree)
Gene ID: 100357398
Gene Symbol: SF3B4
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 5090 bases
Position: chr13:42105174-42110263
Accession: 100357398
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000003976	RRM_1	PF00076.22	2.2e-39	1	2
ENSOCUP00000003976	RRM_1	PF00076.22	2.2e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000004609	SF3B4-201	1275	XM_008264501	ENSOCUP00000003976	424 (aa)	XP_008262723	G1SM50

Gene Model

Click here to download ENSOCUG00000004614's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000004614's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000004614	SF3B4	79	35.979	ENSOCUG00000003005	PABPC1L	56	35.979
ENSOCUG00000004614	SF3B4	70	39.344	ENSOCUG00000004354	-	57	39.344
ENSOCUG00000004614	SF3B4	70	38.919	ENSOCUG00000023935	-	57	38.919

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000004614	SF3B4	100	99.764	ENSG00000143368	SF3B4	100	100.000	Homo_sapiens
ENSOCUG00000004614	SF3B4	57	96.667	ENSAPOG00000017647	sf3b4	77	80.564	Acanthochromis_polyacanthus
ENSOCUG00000004614	SF3B4	100	100.000	ENSAMEG00000010073	SF3B4	100	100.000	Ailuropoda_melanoleuca
ENSOCUG00000004614	SF3B4	57	96.667	ENSAOCG00000019801	sf3b4	77	80.564	Amphiprion_ocellaris
ENSOCUG00000004614	SF3B4	57	96.667	ENSAPEG00000010365	sf3b4	77	80.564	Amphiprion_percula
ENSOCUG00000004614	SF3B4	57	96.250	ENSATEG00000012844	sf3b4	60	96.250	Anabas_testudineus
ENSOCUG00000004614	SF3B4	62	96.198	ENSACAG00000010019	SF3B4	90	90.078	Anolis_carolinensis
ENSOCUG00000004614	SF3B4	100	99.764	ENSANAG00000031025	SF3B4	100	99.764	Aotus_nancymaae
ENSOCUG00000004614	SF3B4	57	95.833	ENSACLG00000014260	sf3b4	76	81.505	Astatotilapia_calliptera
ENSOCUG00000004614	SF3B4	57	96.250	ENSAMXG00000008282	sf3b4	60	96.250	Astyanax_mexicanus
ENSOCUG00000004614	SF3B4	100	100.000	ENSBTAG00000012495	SF3B4	100	100.000	Bos_taurus
ENSOCUG00000004614	SF3B4	91	96.615	ENSBTAG00000012793	-	93	96.615	Bos_taurus
ENSOCUG00000004614	SF3B4	90	82.131	ENSCJAG00000042351	SF3B4	87	82.131	Callithrix_jacchus
ENSOCUG00000004614	SF3B4	100	99.528	ENSCAFG00000011617	SF3B4	100	99.528	Canis_familiaris
ENSOCUG00000004614	SF3B4	100	99.528	ENSCAFG00020019775	SF3B4	100	99.528	Canis_lupus_dingo
ENSOCUG00000004614	SF3B4	100	100.000	ENSCHIG00000025663	-	100	100.000	Capra_hircus
ENSOCUG00000004614	SF3B4	100	99.764	ENSTSYG00000009295	SF3B4	100	99.764	Carlito_syrichta
ENSOCUG00000004614	SF3B4	100	99.764	ENSCPOG00000008267	SF3B4	100	99.764	Cavia_porcellus
ENSOCUG00000004614	SF3B4	100	86.985	ENSCCAG00000021751	-	69	92.901	Cebus_capucinus
ENSOCUG00000004614	SF3B4	95	85.572	ENSCCAG00000019823	-	77	86.503	Cebus_capucinus
ENSOCUG00000004614	SF3B4	100	99.764	ENSCATG00000033114	SF3B4	100	99.764	Cercocebus_atys
ENSOCUG00000004614	SF3B4	100	99.764	ENSCLAG00000015851	SF3B4	100	99.764	Chinchilla_lanigera
ENSOCUG00000004614	SF3B4	100	99.764	ENSCSAG00000018129	SF3B4	100	99.764	Chlorocebus_sabaeus
ENSOCUG00000004614	SF3B4	99	86.085	ENSCPBG00000008041	SF3B4	91	90.885	Chrysemys_picta_bellii
ENSOCUG00000004614	SF3B4	51	90.698	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSOCUG00000004614	SF3B4	100	99.764	ENSCANG00000035579	SF3B4	100	99.764	Colobus_angolensis_palliatus
ENSOCUG00000004614	SF3B4	100	99.764	ENSCGRG00001003590	Sf3b4	100	99.764	Cricetulus_griseus_chok1gshd
ENSOCUG00000004614	SF3B4	100	99.764	ENSCGRG00000016914	Sf3b4	100	99.764	Cricetulus_griseus_crigri
ENSOCUG00000004614	SF3B4	57	96.250	ENSDARG00000018574	sf3b4	77	79.310	Danio_rerio
ENSOCUG00000004614	SF3B4	97	81.114	ENSDNOG00000037231	-	76	82.109	Dasypus_novemcinctus
ENSOCUG00000004614	SF3B4	98	97.115	ENSDNOG00000048908	-	99	97.115	Dasypus_novemcinctus
ENSOCUG00000004614	SF3B4	100	100.000	ENSDORG00000016366	Sf3b4	100	100.000	Dipodomys_ordii
ENSOCUG00000004614	SF3B4	76	92.901	ENSETEG00000008963	SF3B4	76	92.901	Echinops_telfairi
ENSOCUG00000004614	SF3B4	100	100.000	ENSEASG00005001477	SF3B4	100	100.000	Equus_asinus_asinus
ENSOCUG00000004614	SF3B4	100	100.000	ENSECAG00000024737	SF3B4	100	100.000	Equus_caballus
ENSOCUG00000004614	SF3B4	100	100.000	ENSFCAG00000010106	SF3B4	100	100.000	Felis_catus
ENSOCUG00000004614	SF3B4	100	99.764	ENSFDAG00000009286	SF3B4	100	99.764	Fukomys_damarensis
ENSOCUG00000004614	SF3B4	54	96.957	ENSGMOG00000002519	sf3b4	67	97.368	Gadus_morhua
ENSOCUG00000004614	SF3B4	99	89.362	ENSGALG00000013352	SF3B4	90	89.817	Gallus_gallus
ENSOCUG00000004614	SF3B4	63	92.453	ENSGAFG00000010181	sf3b4	58	97.807	Gambusia_affinis
ENSOCUG00000004614	SF3B4	99	85.849	ENSGAGG00000025055	SF3B4	79	90.625	Gopherus_agassizii
ENSOCUG00000004614	SF3B4	100	99.764	ENSGGOG00000004761	SF3B4	100	99.764	Gorilla_gorilla
ENSOCUG00000004614	SF3B4	100	73.585	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSOCUG00000004614	SF3B4	57	95.833	ENSHBUG00000002028	sf3b4	76	81.505	Haplochromis_burtoni
ENSOCUG00000004614	SF3B4	100	99.764	ENSHGLG00000012360	SF3B4	100	99.764	Heterocephalus_glaber_female
ENSOCUG00000004614	SF3B4	100	98.585	ENSHGLG00100008533	SF3B4	100	98.585	Heterocephalus_glaber_male
ENSOCUG00000004614	SF3B4	57	96.667	ENSIPUG00000012242	Sf3b4	60	96.667	Ictalurus_punctatus
ENSOCUG00000004614	SF3B4	100	100.000	ENSSTOG00000000684	-	100	100.000	Ictidomys_tridecemlineatus
ENSOCUG00000004614	SF3B4	76	84.483	ENSJJAG00000022500	Sf3b4	95	84.483	Jaculus_jaculus
ENSOCUG00000004614	SF3B4	56	96.203	ENSKMAG00000008154	sf3b4	58	98.246	Kryptolebias_marmoratus
ENSOCUG00000004614	SF3B4	55	97.425	ENSLBEG00000026818	sf3b4	57	98.246	Labrus_bergylta
ENSOCUG00000004614	SF3B4	57	95.473	ENSLACG00000004436	SF3B4	87	85.625	Latimeria_chalumnae
ENSOCUG00000004614	SF3B4	57	95.885	ENSLOCG00000009048	sf3b4	75	85.580	Lepisosteus_oculatus
ENSOCUG00000004614	SF3B4	100	99.529	ENSLAFG00000008531	SF3B4	100	99.529	Loxodonta_africana
ENSOCUG00000004614	SF3B4	100	99.764	ENSMFAG00000042395	SF3B4	100	99.764	Macaca_fascicularis
ENSOCUG00000004614	SF3B4	92	71.066	ENSMFAG00000039067	-	57	80.930	Macaca_fascicularis
ENSOCUG00000004614	SF3B4	100	99.764	ENSMMUG00000007256	SF3B4	100	99.764	Macaca_mulatta
ENSOCUG00000004614	SF3B4	92	70.558	ENSMNEG00000031526	-	57	80.465	Macaca_nemestrina
ENSOCUG00000004614	SF3B4	100	99.764	ENSMNEG00000031839	SF3B4	100	99.764	Macaca_nemestrina
ENSOCUG00000004614	SF3B4	100	99.764	ENSMLEG00000038667	SF3B4	100	99.764	Mandrillus_leucophaeus
ENSOCUG00000004614	SF3B4	57	97.083	ENSMAMG00000014692	sf3b4	60	97.083	Mastacembelus_armatus
ENSOCUG00000004614	SF3B4	57	95.833	ENSMZEG00005026741	sf3b4	76	81.505	Maylandia_zebra
ENSOCUG00000004614	SF3B4	99	87.943	ENSMGAG00000000653	SF3B4	91	89.556	Meleagris_gallopavo
ENSOCUG00000004614	SF3B4	100	99.764	ENSMAUG00000015266	Sf3b4	100	99.764	Mesocricetus_auratus
ENSOCUG00000004614	SF3B4	100	100.000	ENSMICG00000044961	SF3B4	100	100.000	Microcebus_murinus
ENSOCUG00000004614	SF3B4	100	99.764	ENSMOCG00000013658	-	100	99.764	Microtus_ochrogaster
ENSOCUG00000004614	SF3B4	98	94.699	ENSMOCG00000014155	-	100	94.699	Microtus_ochrogaster
ENSOCUG00000004614	SF3B4	54	97.826	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
ENSOCUG00000004614	SF3B4	100	99.292	ENSMODG00000018767	SF3B4	100	99.292	Monodelphis_domestica
ENSOCUG00000004614	SF3B4	54	97.797	ENSMALG00000006174	sf3b4	57	97.368	Monopterus_albus
ENSOCUG00000004614	SF3B4	100	99.528	MGP_CAROLIEiJ_G0025365	Sf3b4	100	99.528	Mus_caroli
ENSOCUG00000004614	SF3B4	100	99.764	ENSMUSG00000068856	Sf3b4	100	99.764	Mus_musculus
ENSOCUG00000004614	SF3B4	100	99.764	MGP_PahariEiJ_G0026809	Sf3b4	100	99.764	Mus_pahari
ENSOCUG00000004614	SF3B4	100	99.764	MGP_SPRETEiJ_G0026309	Sf3b4	100	99.764	Mus_spretus
ENSOCUG00000004614	SF3B4	100	100.000	ENSMPUG00000005563	SF3B4	100	100.000	Mustela_putorius_furo
ENSOCUG00000004614	SF3B4	100	99.764	ENSMLUG00000010789	SF3B4	100	99.764	Myotis_lucifugus
ENSOCUG00000004614	SF3B4	100	99.528	ENSNGAG00000016337	Sf3b4	100	99.528	Nannospalax_galili
ENSOCUG00000004614	SF3B4	57	96.250	ENSNBRG00000013865	sf3b4	76	81.818	Neolamprologus_brichardi
ENSOCUG00000004614	SF3B4	100	70.093	ENSNLEG00000009693	-	100	70.093	Nomascus_leucogenys
ENSOCUG00000004614	SF3B4	100	76.651	ENSNLEG00000000537	-	82	84.877	Nomascus_leucogenys
ENSOCUG00000004614	SF3B4	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSOCUG00000004614	SF3B4	99	97.387	ENSOPRG00000010808	SF3B4	99	97.387	Ochotona_princeps
ENSOCUG00000004614	SF3B4	75	87.066	ENSODEG00000003597	-	79	87.066	Octodon_degus
ENSOCUG00000004614	SF3B4	56	95.359	ENSONIG00000002730	sf3b4	57	97.807	Oreochromis_niloticus
ENSOCUG00000004614	SF3B4	99	58.140	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSOCUG00000004614	SF3B4	55	96.983	ENSORLG00000003062	sf3b4	59	97.807	Oryzias_latipes
ENSOCUG00000004614	SF3B4	100	100.000	ENSOGAG00000006265	SF3B4	100	100.000	Otolemur_garnettii
ENSOCUG00000004614	SF3B4	86	78.846	ENSOARG00000007368	-	77	79.688	Ovis_aries
ENSOCUG00000004614	SF3B4	100	100.000	ENSOARG00000020718	-	100	100.000	Ovis_aries
ENSOCUG00000004614	SF3B4	100	81.840	ENSPPAG00000030024	-	78	82.716	Pan_paniscus
ENSOCUG00000004614	SF3B4	100	99.764	ENSPPAG00000040904	SF3B4	100	99.764	Pan_paniscus
ENSOCUG00000004614	SF3B4	100	100.000	ENSPPRG00000007384	SF3B4	100	100.000	Panthera_pardus
ENSOCUG00000004614	SF3B4	100	99.528	ENSPTIG00000014530	SF3B4	100	99.528	Panthera_tigris_altaica
ENSOCUG00000004614	SF3B4	100	99.764	ENSPTRG00000001243	SF3B4	100	99.764	Pan_troglodytes
ENSOCUG00000004614	SF3B4	100	79.009	ENSPTRG00000049727	-	59	90.254	Pan_troglodytes
ENSOCUG00000004614	SF3B4	100	99.764	ENSPANG00000005126	SF3B4	100	99.764	Papio_anubis
ENSOCUG00000004614	SF3B4	55	97.425	ENSPKIG00000020669	sf3b4	60	98.246	Paramormyrops_kingsleyae
ENSOCUG00000004614	SF3B4	66	75.714	ENSPSIG00000009565	SF3B4	68	98.378	Pelodiscus_sinensis
ENSOCUG00000004614	SF3B4	100	99.764	ENSPEMG00000017568	Sf3b4	100	99.764	Peromyscus_maniculatus_bairdii
ENSOCUG00000004614	SF3B4	61	88.716	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSOCUG00000004614	SF3B4	100	99.292	ENSPCIG00000008765	SF3B4	100	99.292	Phascolarctos_cinereus
ENSOCUG00000004614	SF3B4	64	90.476	ENSPFOG00000005754	sf3b4	58	97.368	Poecilia_formosa
ENSOCUG00000004614	SF3B4	64	90.476	ENSPLAG00000001401	sf3b4	63	97.368	Poecilia_latipinna
ENSOCUG00000004614	SF3B4	64	90.476	ENSPREG00000011076	sf3b4	57	97.807	Poecilia_reticulata
ENSOCUG00000004614	SF3B4	63	96.635	ENSPCAG00000000392	SF3B4	63	96.635	Procavia_capensis
ENSOCUG00000004614	SF3B4	100	100.000	ENSPCOG00000015399	SF3B4	100	100.000	Propithecus_coquereli
ENSOCUG00000004614	SF3B4	100	100.000	ENSPVAG00000014171	SF3B4	100	100.000	Pteropus_vampyrus
ENSOCUG00000004614	SF3B4	57	95.833	ENSPNYG00000012700	sf3b4	76	81.505	Pundamilia_nyererei
ENSOCUG00000004614	SF3B4	57	96.667	ENSPNAG00000000686	sf3b4	61	96.667	Pygocentrus_nattereri
ENSOCUG00000004614	SF3B4	100	99.764	ENSRNOG00000021181	Sf3b4	100	99.764	Rattus_norvegicus
ENSOCUG00000004614	SF3B4	100	99.764	ENSRBIG00000043392	SF3B4	100	99.764	Rhinopithecus_bieti
ENSOCUG00000004614	SF3B4	92	71.465	ENSRROG00000028213	-	91	67.647	Rhinopithecus_roxellana
ENSOCUG00000004614	SF3B4	100	99.764	ENSRROG00000029366	SF3B4	100	99.764	Rhinopithecus_roxellana
ENSOCUG00000004614	SF3B4	100	99.528	ENSSBOG00000012310	-	100	99.528	Saimiri_boliviensis_boliviensis
ENSOCUG00000004614	SF3B4	100	72.877	ENSSBOG00000025174	-	73	79.567	Saimiri_boliviensis_boliviensis
ENSOCUG00000004614	SF3B4	100	96.698	ENSSHAG00000004043	SF3B4	100	98.950	Sarcophilus_harrisii
ENSOCUG00000004614	SF3B4	56	96.624	ENSSFOG00015008864	sf3b4	56	98.246	Scleropages_formosus
ENSOCUG00000004614	SF3B4	57	96.667	ENSSMAG00000006837	sf3b4	60	96.667	Scophthalmus_maximus
ENSOCUG00000004614	SF3B4	57	97.083	ENSSDUG00000012064	sf3b4	60	97.083	Seriola_dumerili
ENSOCUG00000004614	SF3B4	57	97.083	ENSSLDG00000014226	sf3b4	60	97.083	Seriola_lalandi_dorsalis
ENSOCUG00000004614	SF3B4	72	95.102	ENSSPUG00000001028	SF3B4	57	98.684	Sphenodon_punctatus
ENSOCUG00000004614	SF3B4	57	97.500	ENSSPAG00000019219	sf3b4	60	97.500	Stegastes_partitus
ENSOCUG00000004614	SF3B4	85	66.298	ENSSSCG00000039440	-	79	65.741	Sus_scrofa
ENSOCUG00000004614	SF3B4	100	99.764	ENSSSCG00000006665	-	100	99.764	Sus_scrofa
ENSOCUG00000004614	SF3B4	56	97.034	ENSTGUG00000004470	SF3B4	90	98.246	Taeniopygia_guttata
ENSOCUG00000004614	SF3B4	54	96.916	ENSTRUG00000004516	sf3b4	57	96.491	Takifugu_rubripes
ENSOCUG00000004614	SF3B4	100	100.000	ENSTTRG00000005217	SF3B4	100	100.000	Tursiops_truncatus
ENSOCUG00000004614	SF3B4	100	100.000	ENSUAMG00000022468	SF3B4	100	100.000	Ursus_americanus
ENSOCUG00000004614	SF3B4	100	99.057	ENSUMAG00000003802	SF3B4	100	99.057	Ursus_maritimus
ENSOCUG00000004614	SF3B4	97	100.000	ENSVPAG00000008152	SF3B4	100	100.000	Vicugna_pacos
ENSOCUG00000004614	SF3B4	65	96.377	ENSVVUG00000022697	-	58	96.377	Vulpes_vulpes
ENSOCUG00000004614	SF3B4	99	92.823	ENSVVUG00000007732	-	100	92.823	Vulpes_vulpes
ENSOCUG00000004614	SF3B4	54	97.391	ENSXCOG00000019895	sf3b4	58	97.807	Xiphophorus_couchianus
ENSOCUG00000004614	SF3B4	54	97.391	ENSXMAG00000003772	sf3b4	58	97.807	Xiphophorus_maculatus