EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000004817 (Gene tree)
Gene ID: 100337744
Gene Symbol: LSG1
Alias: -
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 46684 bases
Position: chr14:90475419-90522102
Accession: 100337744
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000004166	MMR_HSR1	PF01926.23	4.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000004816	LSG1-201	7127	XM_002716520	ENSOCUP00000004166	659 (aa)	XP_002716566	G1SML0

Gene Model

Click here to download ENSOCUG00000004817's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000004817's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000004817	LSG1	67	30.580	ENSOCUG00000002110	GNL1	53	39.888

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000004817	LSG1	100	85.736	ENSG00000041802	LSG1	98	92.529	Homo_sapiens
ENSOCUG00000004817	LSG1	99	65.204	ENSAPOG00000009694	lsg1	99	65.658	Acanthochromis_polyacanthus
ENSOCUG00000004817	LSG1	99	82.094	ENSAMEG00000009343	LSG1	99	82.094	Ailuropoda_melanoleuca
ENSOCUG00000004817	LSG1	98	64.806	ENSACIG00000012406	lsg1	99	65.350	Amphilophus_citrinellus
ENSOCUG00000004817	LSG1	99	63.910	ENSAOCG00000016066	lsg1	99	64.060	Amphiprion_ocellaris
ENSOCUG00000004817	LSG1	99	63.843	ENSAPEG00000003252	lsg1	99	63.843	Amphiprion_percula
ENSOCUG00000004817	LSG1	98	65.325	ENSATEG00000011794	lsg1	99	65.053	Anabas_testudineus
ENSOCUG00000004817	LSG1	95	64.455	ENSACAG00000004222	LSG1	99	64.184	Anolis_carolinensis
ENSOCUG00000004817	LSG1	100	86.495	ENSANAG00000021153	LSG1	100	86.495	Aotus_nancymaae
ENSOCUG00000004817	LSG1	99	63.785	ENSACLG00000000520	lsg1	99	63.785	Astatotilapia_calliptera
ENSOCUG00000004817	LSG1	99	63.801	ENSAMXG00000008271	lsg1	99	63.801	Astyanax_mexicanus
ENSOCUG00000004817	LSG1	100	81.942	ENSBTAG00000008461	LSG1	100	81.942	Bos_taurus
ENSOCUG00000004817	LSG1	70	51.832	WBGene00016907	C53H9.2	94	58.065	Caenorhabditis_elegans
ENSOCUG00000004817	LSG1	100	86.039	ENSCJAG00000013962	LSG1	100	86.039	Callithrix_jacchus
ENSOCUG00000004817	LSG1	95	82.400	ENSCAFG00000013445	LSG1	99	82.400	Canis_familiaris
ENSOCUG00000004817	LSG1	99	81.392	ENSCAFG00020002216	LSG1	99	82.183	Canis_lupus_dingo
ENSOCUG00000004817	LSG1	99	83.283	ENSCHIG00000015769	LSG1	99	83.283	Capra_hircus
ENSOCUG00000004817	LSG1	100	86.343	ENSTSYG00000001447	LSG1	100	86.343	Carlito_syrichta
ENSOCUG00000004817	LSG1	95	77.742	ENSCAPG00000009856	LSG1	100	77.831	Cavia_aperea
ENSOCUG00000004817	LSG1	100	85.281	ENSCCAG00000035744	LSG1	100	85.281	Cebus_capucinus
ENSOCUG00000004817	LSG1	100	86.343	ENSCATG00000042060	LSG1	100	84.674	Cercocebus_atys
ENSOCUG00000004817	LSG1	100	86.950	ENSCSAG00000008796	LSG1	92	86.950	Chlorocebus_sabaeus
ENSOCUG00000004817	LSG1	99	69.127	ENSCPBG00000015941	LSG1	83	69.127	Chrysemys_picta_bellii
ENSOCUG00000004817	LSG1	69	58.937	ENSCING00000007079	-	97	58.937	Ciona_intestinalis
ENSOCUG00000004817	LSG1	77	56.000	ENSCSAVG00000002514	-	98	56.000	Ciona_savignyi
ENSOCUG00000004817	LSG1	100	86.191	ENSCANG00000030709	LSG1	100	86.191	Colobus_angolensis_palliatus
ENSOCUG00000004817	LSG1	100	84.091	ENSCGRG00001019846	Lsg1	100	84.091	Cricetulus_griseus_chok1gshd
ENSOCUG00000004817	LSG1	100	84.091	ENSCGRG00000014617	Lsg1	100	84.091	Cricetulus_griseus_crigri
ENSOCUG00000004817	LSG1	98	63.720	ENSCSEG00000008522	lsg1	99	62.018	Cynoglossus_semilaevis
ENSOCUG00000004817	LSG1	97	65.008	ENSCVAG00000002484	lsg1	99	65.706	Cyprinodon_variegatus
ENSOCUG00000004817	LSG1	99	66.768	ENSDARG00000015352	lsg1	99	66.768	Danio_rerio
ENSOCUG00000004817	LSG1	100	82.175	ENSDNOG00000006224	LSG1	100	81.089	Dasypus_novemcinctus
ENSOCUG00000004817	LSG1	85	59.836	FBgn0266284	Ns3	94	56.654	Drosophila_melanogaster
ENSOCUG00000004817	LSG1	88	86.667	ENSETEG00000003888	LSG1	89	86.667	Echinops_telfairi
ENSOCUG00000004817	LSG1	88	56.566	ENSEBUG00000003119	lsg1	85	56.397	Eptatretus_burgeri
ENSOCUG00000004817	LSG1	100	85.435	ENSEASG00005000678	LSG1	100	85.888	Equus_asinus_asinus
ENSOCUG00000004817	LSG1	100	86.039	ENSECAG00000017659	LSG1	100	86.039	Equus_caballus
ENSOCUG00000004817	LSG1	87	81.034	ENSEEUG00000015217	LSG1	87	81.034	Erinaceus_europaeus
ENSOCUG00000004817	LSG1	99	61.480	ENSELUG00000023973	lsg1	99	61.898	Esox_lucius
ENSOCUG00000004817	LSG1	99	85.106	ENSFCAG00000024957	LSG1	99	85.106	Felis_catus
ENSOCUG00000004817	LSG1	99	64.482	ENSFALG00000007210	LSG1	94	66.938	Ficedula_albicollis
ENSOCUG00000004817	LSG1	100	79.669	ENSFDAG00000017373	LSG1	100	80.422	Fukomys_damarensis
ENSOCUG00000004817	LSG1	97	64.861	ENSFHEG00000003680	lsg1	99	63.855	Fundulus_heteroclitus
ENSOCUG00000004817	LSG1	83	71.605	ENSGMOG00000015834	lsg1	92	69.180	Gadus_morhua
ENSOCUG00000004817	LSG1	99	63.447	ENSGALG00000007058	LSG1	87	64.715	Gallus_gallus
ENSOCUG00000004817	LSG1	97	65.265	ENSGAFG00000015831	lsg1	99	64.653	Gambusia_affinis
ENSOCUG00000004817	LSG1	98	63.303	ENSGACG00000009323	lsg1	99	62.219	Gasterosteus_aculeatus
ENSOCUG00000004817	LSG1	100	86.191	ENSGGOG00000000520	LSG1	100	86.191	Gorilla_gorilla
ENSOCUG00000004817	LSG1	99	64.448	ENSHBUG00000005659	lsg1	99	64.448	Haplochromis_burtoni
ENSOCUG00000004817	LSG1	100	78.797	ENSHGLG00000017390	LSG1	100	79.819	Heterocephalus_glaber_female
ENSOCUG00000004817	LSG1	100	78.797	ENSHGLG00100018587	LSG1	100	79.819	Heterocephalus_glaber_male
ENSOCUG00000004817	LSG1	97	63.524	ENSHCOG00000016848	lsg1	99	63.333	Hippocampus_comes
ENSOCUG00000004817	LSG1	99	64.857	ENSIPUG00000008631	lsg1	99	64.706	Ictalurus_punctatus
ENSOCUG00000004817	LSG1	81	81.818	ENSSTOG00000010234	LSG1	99	81.818	Ictidomys_tridecemlineatus
ENSOCUG00000004817	LSG1	100	81.269	ENSJJAG00000015513	Lsg1	100	81.269	Jaculus_jaculus
ENSOCUG00000004817	LSG1	98	61.765	ENSKMAG00000009681	lsg1	99	61.760	Kryptolebias_marmoratus
ENSOCUG00000004817	LSG1	98	63.777	ENSLBEG00000024261	lsg1	99	63.733	Labrus_bergylta
ENSOCUG00000004817	LSG1	99	64.820	ENSLACG00000013399	LSG1	99	64.820	Latimeria_chalumnae
ENSOCUG00000004817	LSG1	98	66.667	ENSLOCG00000004918	lsg1	99	65.367	Lepisosteus_oculatus
ENSOCUG00000004817	LSG1	100	83.763	ENSLAFG00000012919	-	100	82.836	Loxodonta_africana
ENSOCUG00000004817	LSG1	100	86.646	ENSMFAG00000039903	LSG1	100	84.977	Macaca_fascicularis
ENSOCUG00000004817	LSG1	100	86.798	ENSMMUG00000010708	LSG1	100	86.798	Macaca_mulatta
ENSOCUG00000004817	LSG1	100	86.798	ENSMNEG00000031538	LSG1	100	85.129	Macaca_nemestrina
ENSOCUG00000004817	LSG1	100	86.495	ENSMLEG00000041184	LSG1	100	86.495	Mandrillus_leucophaeus
ENSOCUG00000004817	LSG1	99	62.593	ENSMAMG00000000470	lsg1	99	62.556	Mastacembelus_armatus
ENSOCUG00000004817	LSG1	99	64.599	ENSMZEG00005017865	lsg1	99	64.599	Maylandia_zebra
ENSOCUG00000004817	LSG1	89	66.667	ENSMGAG00000007050	LSG1	99	65.878	Meleagris_gallopavo
ENSOCUG00000004817	LSG1	91	82.587	ENSMAUG00000016976	Lsg1	93	82.090	Mesocricetus_auratus
ENSOCUG00000004817	LSG1	100	84.977	ENSMICG00000049087	LSG1	100	84.977	Microcebus_murinus
ENSOCUG00000004817	LSG1	100	82.628	ENSMOCG00000022136	Lsg1	100	81.448	Microtus_ochrogaster
ENSOCUG00000004817	LSG1	83	73.139	ENSMMOG00000008884	lsg1	99	71.542	Mola_mola
ENSOCUG00000004817	LSG1	99	59.342	ENSMODG00000019828	LSG1	99	58.358	Monodelphis_domestica
ENSOCUG00000004817	LSG1	100	81.639	MGP_CAROLIEiJ_G0020648	Lsg1	100	80.273	Mus_caroli
ENSOCUG00000004817	LSG1	100	81.750	ENSMUSG00000022538	Lsg1	100	82.094	Mus_musculus
ENSOCUG00000004817	LSG1	98	82.695	MGP_PahariEiJ_G0016352	Lsg1	100	82.727	Mus_pahari
ENSOCUG00000004817	LSG1	100	82.094	MGP_SPRETEiJ_G0021544	Lsg1	100	81.942	Mus_spretus
ENSOCUG00000004817	LSG1	99	81.915	ENSMPUG00000003734	LSG1	99	81.915	Mustela_putorius_furo
ENSOCUG00000004817	LSG1	99	84.825	ENSMLUG00000012548	LSG1	99	84.825	Myotis_lucifugus
ENSOCUG00000004817	LSG1	100	82.246	ENSNGAG00000021872	Lsg1	100	82.246	Nannospalax_galili
ENSOCUG00000004817	LSG1	100	86.343	ENSNLEG00000008293	LSG1	100	86.343	Nomascus_leucogenys
ENSOCUG00000004817	LSG1	69	72.165	ENSMEUG00000009041	-	82	72.165	Notamacropus_eugenii
ENSOCUG00000004817	LSG1	99	64.458	ENSONIG00000002635	lsg1	99	63.988	Oreochromis_niloticus
ENSOCUG00000004817	LSG1	95	72.973	ENSOANG00000012742	LSG1	99	71.611	Ornithorhynchus_anatinus
ENSOCUG00000004817	LSG1	98	63.215	ENSORLG00000007695	lsg1	99	63.485	Oryzias_latipes
ENSOCUG00000004817	LSG1	98	63.256	ENSORLG00020016286	lsg1	99	63.389	Oryzias_latipes_hni
ENSOCUG00000004817	LSG1	98	62.906	ENSORLG00015012025	lsg1	99	63.030	Oryzias_latipes_hsok
ENSOCUG00000004817	LSG1	98	62.346	ENSOMEG00000022379	lsg1	99	62.179	Oryzias_melastigma
ENSOCUG00000004817	LSG1	100	85.520	ENSOGAG00000003475	LSG1	100	85.520	Otolemur_garnettii
ENSOCUG00000004817	LSG1	99	82.094	ENSOARG00000020403	LSG1	99	82.094	Ovis_aries
ENSOCUG00000004817	LSG1	100	85.584	ENSPPAG00000029271	LSG1	100	85.584	Pan_paniscus
ENSOCUG00000004817	LSG1	99	84.060	ENSPPRG00000010281	LSG1	99	84.060	Panthera_pardus
ENSOCUG00000004817	LSG1	99	85.106	ENSPTIG00000010789	LSG1	99	85.106	Panthera_tigris_altaica
ENSOCUG00000004817	LSG1	100	85.432	ENSPTRG00000015760	LSG1	100	85.432	Pan_troglodytes
ENSOCUG00000004817	LSG1	100	86.798	ENSPANG00000018249	LSG1	100	85.129	Papio_anubis
ENSOCUG00000004817	LSG1	98	64.055	ENSPKIG00000002895	lsg1	100	63.338	Paramormyrops_kingsleyae
ENSOCUG00000004817	LSG1	96	65.732	ENSPSIG00000009821	LSG1	99	65.576	Pelodiscus_sinensis
ENSOCUG00000004817	LSG1	95	65.183	ENSPMGG00000000931	lsg1	99	64.388	Periophthalmus_magnuspinnatus
ENSOCUG00000004817	LSG1	100	82.477	ENSPEMG00000012082	-	100	81.364	Peromyscus_maniculatus_bairdii
ENSOCUG00000004817	LSG1	99	59.435	ENSPMAG00000007451	lsg1	99	59.435	Petromyzon_marinus
ENSOCUG00000004817	LSG1	99	68.229	ENSPCIG00000013890	LSG1	82	68.229	Phascolarctos_cinereus
ENSOCUG00000004817	LSG1	97	65.116	ENSPFOG00000021882	lsg1	99	64.873	Poecilia_formosa
ENSOCUG00000004817	LSG1	97	64.186	ENSPLAG00000019536	lsg1	99	64.275	Poecilia_latipinna
ENSOCUG00000004817	LSG1	97	64.451	ENSPMEG00000017281	lsg1	99	64.232	Poecilia_mexicana
ENSOCUG00000004817	LSG1	97	54.795	ENSPREG00000006048	lsg1	99	55.423	Poecilia_reticulata
ENSOCUG00000004817	LSG1	92	84.539	ENSPPYG00000014425	LSG1	100	83.388	Pongo_abelii
ENSOCUG00000004817	LSG1	90	89.333	ENSPCAG00000005511	LSG1	90	89.333	Procavia_capensis
ENSOCUG00000004817	LSG1	100	86.343	ENSPCOG00000012360	LSG1	100	86.343	Propithecus_coquereli
ENSOCUG00000004817	LSG1	99	63.636	ENSPNYG00000021994	lsg1	99	63.636	Pundamilia_nyererei
ENSOCUG00000004817	LSG1	99	66.320	ENSPNAG00000015533	lsg1	99	66.168	Pygocentrus_nattereri
ENSOCUG00000004817	LSG1	100	82.655	ENSRNOG00000001727	Lsg1	100	82.655	Rattus_norvegicus
ENSOCUG00000004817	LSG1	100	85.432	ENSRBIG00000029053	LSG1	100	85.432	Rhinopithecus_bieti
ENSOCUG00000004817	LSG1	100	85.432	ENSRROG00000037702	LSG1	100	85.432	Rhinopithecus_roxellana
ENSOCUG00000004817	LSG1	65	57.485	YGL099W	LSG1	68	57.485	Saccharomyces_cerevisiae
ENSOCUG00000004817	LSG1	100	86.495	ENSSBOG00000034938	LSG1	100	86.495	Saimiri_boliviensis_boliviensis
ENSOCUG00000004817	LSG1	78	67.547	ENSSHAG00000003487	LSG1	99	66.163	Sarcophilus_harrisii
ENSOCUG00000004817	LSG1	98	65.084	ENSSFOG00015008955	lsg1	99	64.211	Scleropages_formosus
ENSOCUG00000004817	LSG1	98	64.832	ENSSDUG00000004622	lsg1	99	64.511	Seriola_dumerili
ENSOCUG00000004817	LSG1	98	65.023	ENSSLDG00000010869	lsg1	99	64.286	Seriola_lalandi_dorsalis
ENSOCUG00000004817	LSG1	81	82.111	ENSSARG00000012981	LSG1	81	82.111	Sorex_araneus
ENSOCUG00000004817	LSG1	99	68.053	ENSSPUG00000016347	LSG1	99	66.667	Sphenodon_punctatus
ENSOCUG00000004817	LSG1	99	63.086	ENSSPAG00000005508	lsg1	99	64.448	Stegastes_partitus
ENSOCUG00000004817	LSG1	99	83.435	ENSSSCG00000011827	LSG1	99	82.219	Sus_scrofa
ENSOCUG00000004817	LSG1	89	65.042	ENSTGUG00000009068	LSG1	99	64.538	Taeniopygia_guttata
ENSOCUG00000004817	LSG1	97	62.229	ENSTRUG00000017380	lsg1	99	60.207	Takifugu_rubripes
ENSOCUG00000004817	LSG1	97	65.325	ENSTNIG00000015570	lsg1	99	65.106	Tetraodon_nigroviridis
ENSOCUG00000004817	LSG1	99	76.935	ENSTTRG00000000559	LSG1	99	75.569	Tursiops_truncatus
ENSOCUG00000004817	LSG1	99	82.827	ENSUAMG00000012454	LSG1	99	82.827	Ursus_americanus
ENSOCUG00000004817	LSG1	99	82.827	ENSUMAG00000000855	LSG1	99	82.827	Ursus_maritimus
ENSOCUG00000004817	LSG1	95	79.200	ENSVPAG00000012400	LSG1	99	77.920	Vicugna_pacos
ENSOCUG00000004817	LSG1	95	81.760	ENSVVUG00000008956	LSG1	97	81.760	Vulpes_vulpes
ENSOCUG00000004817	LSG1	99	65.165	ENSXETG00000003451	lsg1	99	65.244	Xenopus_tropicalis
ENSOCUG00000004817	LSG1	97	64.396	ENSXCOG00000003239	lsg1	99	63.677	Xiphophorus_couchianus
ENSOCUG00000004817	LSG1	97	64.142	ENSXMAG00000005536	lsg1	99	64.036	Xiphophorus_maculatus