EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000005022 (Gene tree)
Gene ID: 100348924
Gene Symbol: APEX1
Alias: -
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 2704 bases
Position: chr17:40910887-40913590
Accession: 100348924
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000004349	Exo_endo_phos	PF03372.23	9.8e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000005021	APEX1-201	1035	XM_002718033	ENSOCUP00000004349	318 (aa)	XP_002718079	G1SN16

Gene Model

Click here to download ENSOCUG00000005022's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000005022's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000005022	APEX1	100	94.654	ENSG00000100823	APEX1	100	94.654	Homo_sapiens
ENSOCUG00000005022	APEX1	88	69.892	ENSAPOG00000017002	apex1	91	69.892	Acanthochromis_polyacanthus
ENSOCUG00000005022	APEX1	100	95.597	ENSAMEG00000005418	APEX1	100	95.597	Ailuropoda_melanoleuca
ENSOCUG00000005022	APEX1	87	71.583	ENSACIG00000010653	apex1	94	71.685	Amphilophus_citrinellus
ENSOCUG00000005022	APEX1	88	69.534	ENSAOCG00000009649	apex1	90	69.534	Amphiprion_ocellaris
ENSOCUG00000005022	APEX1	88	69.534	ENSAPEG00000021453	apex1	90	69.534	Amphiprion_percula
ENSOCUG00000005022	APEX1	99	67.405	ENSATEG00000002883	apex1	97	67.405	Anabas_testudineus
ENSOCUG00000005022	APEX1	100	70.497	ENSACAG00000008099	APEX1	100	70.497	Anolis_carolinensis
ENSOCUG00000005022	APEX1	100	96.226	ENSANAG00000030117	APEX1	100	96.226	Aotus_nancymaae
ENSOCUG00000005022	APEX1	87	71.377	ENSACLG00000018441	apex1	99	66.772	Astatotilapia_calliptera
ENSOCUG00000005022	APEX1	100	66.562	ENSAMXG00000034699	apex1	100	66.250	Astyanax_mexicanus
ENSOCUG00000005022	APEX1	100	94.340	ENSBTAG00000002745	APEX1	100	94.340	Bos_taurus
ENSOCUG00000005022	APEX1	80	45.312	WBGene00001372	exo-3	88	45.312	Caenorhabditis_elegans
ENSOCUG00000005022	APEX1	100	96.226	ENSCJAG00000009726	APEX1	100	96.226	Callithrix_jacchus
ENSOCUG00000005022	APEX1	100	95.283	ENSCAFG00000032033	APEX1	100	95.283	Canis_familiaris
ENSOCUG00000005022	APEX1	100	95.283	ENSCAFG00020014377	-	100	95.283	Canis_lupus_dingo
ENSOCUG00000005022	APEX1	54	92.442	ENSCAFG00020023002	-	96	92.442	Canis_lupus_dingo
ENSOCUG00000005022	APEX1	100	94.969	ENSCHIG00000007298	-	100	94.969	Capra_hircus
ENSOCUG00000005022	APEX1	98	75.641	ENSCHIG00000014537	-	99	75.641	Capra_hircus
ENSOCUG00000005022	APEX1	100	93.711	ENSTSYG00000034813	APEX1	100	93.711	Carlito_syrichta
ENSOCUG00000005022	APEX1	85	87.454	ENSCAPG00000016235	APEX1	91	96.186	Cavia_aperea
ENSOCUG00000005022	APEX1	100	93.396	ENSCPOG00000030909	APEX1	100	93.396	Cavia_porcellus
ENSOCUG00000005022	APEX1	100	96.226	ENSCCAG00000033056	-	100	96.226	Cebus_capucinus
ENSOCUG00000005022	APEX1	100	83.019	ENSCCAG00000031931	-	100	83.019	Cebus_capucinus
ENSOCUG00000005022	APEX1	100	94.654	ENSCATG00000015580	APEX1	100	94.654	Cercocebus_atys
ENSOCUG00000005022	APEX1	100	93.711	ENSCLAG00000001002	APEX1	100	93.711	Chinchilla_lanigera
ENSOCUG00000005022	APEX1	100	94.340	ENSCSAG00000016685	-	100	94.340	Chlorocebus_sabaeus
ENSOCUG00000005022	APEX1	100	94.340	ENSCSAG00000016670	-	100	94.340	Chlorocebus_sabaeus
ENSOCUG00000005022	APEX1	100	71.473	ENSCPBG00000009567	APEX1	100	71.473	Chrysemys_picta_bellii
ENSOCUG00000005022	APEX1	91	54.915	ENSCING00000008137	-	84	58.491	Ciona_intestinalis
ENSOCUG00000005022	APEX1	83	52.830	ENSCSAVG00000007144	-	100	53.668	Ciona_savignyi
ENSOCUG00000005022	APEX1	100	94.654	ENSCANG00000030726	APEX1	100	94.654	Colobus_angolensis_palliatus
ENSOCUG00000005022	APEX1	100	92.453	ENSCGRG00001017046	Apex1	100	92.453	Cricetulus_griseus_chok1gshd
ENSOCUG00000005022	APEX1	100	92.453	ENSCGRG00000008984	Apex1	100	92.453	Cricetulus_griseus_crigri
ENSOCUG00000005022	APEX1	99	65.615	ENSCSEG00000017499	apex1	99	65.409	Cynoglossus_semilaevis
ENSOCUG00000005022	APEX1	99	66.456	ENSCVAG00000022075	apex1	99	66.456	Cyprinodon_variegatus
ENSOCUG00000005022	APEX1	100	67.610	ENSDARG00000045843	apex1	100	67.296	Danio_rerio
ENSOCUG00000005022	APEX1	100	89.937	ENSDNOG00000042234	APEX1	95	89.937	Dasypus_novemcinctus
ENSOCUG00000005022	APEX1	100	94.969	ENSDORG00000001616	Apex1	100	94.969	Dipodomys_ordii
ENSOCUG00000005022	APEX1	100	93.711	ENSETEG00000004855	-	100	93.711	Echinops_telfairi
ENSOCUG00000005022	APEX1	75	64.854	ENSEBUG00000000622	-	92	64.854	Eptatretus_burgeri
ENSOCUG00000005022	APEX1	100	96.226	ENSEASG00005017489	APEX1	74	96.226	Equus_asinus_asinus
ENSOCUG00000005022	APEX1	100	96.226	ENSECAG00000022325	APEX1	82	96.226	Equus_caballus
ENSOCUG00000005022	APEX1	91	93.403	ENSEEUG00000012569	APEX1	100	93.403	Erinaceus_europaeus
ENSOCUG00000005022	APEX1	100	65.723	ENSELUG00000021706	apex1	100	66.250	Esox_lucius
ENSOCUG00000005022	APEX1	100	95.597	ENSFCAG00000030869	APEX1	100	95.597	Felis_catus
ENSOCUG00000005022	APEX1	100	93.396	ENSFDAG00000006120	APEX1	100	93.396	Fukomys_damarensis
ENSOCUG00000005022	APEX1	99	67.722	ENSFHEG00000009031	apex1	83	67.722	Fundulus_heteroclitus
ENSOCUG00000005022	APEX1	99	62.975	ENSGMOG00000007943	apex1	99	62.658	Gadus_morhua
ENSOCUG00000005022	APEX1	99	67.405	ENSGAFG00000005311	apex1	99	67.405	Gambusia_affinis
ENSOCUG00000005022	APEX1	99	65.823	ENSGACG00000019497	apex1	99	69.925	Gasterosteus_aculeatus
ENSOCUG00000005022	APEX1	100	70.846	ENSGAGG00000014999	APEX1	100	70.846	Gopherus_agassizii
ENSOCUG00000005022	APEX1	100	94.969	ENSGGOG00000002128	APEX1	100	94.969	Gorilla_gorilla
ENSOCUG00000005022	APEX1	99	66.456	ENSHBUG00000005894	apex1	99	67.089	Haplochromis_burtoni
ENSOCUG00000005022	APEX1	100	94.340	ENSHGLG00000002848	APEX1	100	94.340	Heterocephalus_glaber_female
ENSOCUG00000005022	APEX1	100	94.340	ENSHGLG00100017878	APEX1	100	94.340	Heterocephalus_glaber_male
ENSOCUG00000005022	APEX1	99	66.352	ENSHCOG00000009961	apex1	99	66.038	Hippocampus_comes
ENSOCUG00000005022	APEX1	100	68.652	ENSIPUG00000005799	apex1	100	68.339	Ictalurus_punctatus
ENSOCUG00000005022	APEX1	100	94.340	ENSSTOG00000010096	APEX1	100	94.340	Ictidomys_tridecemlineatus
ENSOCUG00000005022	APEX1	100	79.560	ENSJJAG00000020465	-	96	83.557	Jaculus_jaculus
ENSOCUG00000005022	APEX1	100	83.333	ENSJJAG00000003660	-	100	83.333	Jaculus_jaculus
ENSOCUG00000005022	APEX1	100	93.082	ENSJJAG00000012067	-	100	93.082	Jaculus_jaculus
ENSOCUG00000005022	APEX1	99	66.772	ENSKMAG00000021171	apex1	99	66.772	Kryptolebias_marmoratus
ENSOCUG00000005022	APEX1	98	64.537	ENSLBEG00000010248	apex1	99	64.537	Labrus_bergylta
ENSOCUG00000005022	APEX1	100	66.981	ENSLACG00000008617	APEX1	100	66.981	Latimeria_chalumnae
ENSOCUG00000005022	APEX1	100	65.839	ENSLOCG00000015516	apex1	99	66.355	Lepisosteus_oculatus
ENSOCUG00000005022	APEX1	100	93.396	ENSLAFG00000021872	APEX1	100	93.396	Loxodonta_africana
ENSOCUG00000005022	APEX1	100	94.340	ENSMFAG00000002565	APEX1	100	94.340	Macaca_fascicularis
ENSOCUG00000005022	APEX1	100	94.340	ENSMMUG00000048039	APEX1	100	94.340	Macaca_mulatta
ENSOCUG00000005022	APEX1	100	94.340	ENSMNEG00000036944	APEX1	100	94.340	Macaca_nemestrina
ENSOCUG00000005022	APEX1	100	94.654	ENSMLEG00000042125	APEX1	100	94.654	Mandrillus_leucophaeus
ENSOCUG00000005022	APEX1	99	67.089	ENSMAMG00000023526	apex1	99	67.089	Mastacembelus_armatus
ENSOCUG00000005022	APEX1	87	71.377	ENSMZEG00005014187	apex1	99	66.772	Maylandia_zebra
ENSOCUG00000005022	APEX1	100	92.453	ENSMAUG00000013994	Apex1	100	92.453	Mesocricetus_auratus
ENSOCUG00000005022	APEX1	100	95.597	ENSMICG00000043554	APEX1	100	95.597	Microcebus_murinus
ENSOCUG00000005022	APEX1	100	92.767	ENSMOCG00000013721	Apex1	100	92.767	Microtus_ochrogaster
ENSOCUG00000005022	APEX1	88	67.857	ENSMMOG00000010031	apex1	97	62.696	Mola_mola
ENSOCUG00000005022	APEX1	100	85.000	ENSMODG00000007125	APEX1	100	85.000	Monodelphis_domestica
ENSOCUG00000005022	APEX1	88	64.158	ENSMALG00000011699	apex1	75	64.158	Monopterus_albus
ENSOCUG00000005022	APEX1	99	95.268	MGP_CAROLIEiJ_G0019209	Apex1	99	95.268	Mus_caroli
ENSOCUG00000005022	APEX1	100	95.283	ENSMUSG00000035960	Apex1	100	95.283	Mus_musculus
ENSOCUG00000005022	APEX1	100	94.654	MGP_PahariEiJ_G0030232	Apex1	100	94.654	Mus_pahari
ENSOCUG00000005022	APEX1	100	95.283	MGP_SPRETEiJ_G0020101	Apex1	100	95.283	Mus_spretus
ENSOCUG00000005022	APEX1	100	94.375	ENSMLUG00000028957	APEX1	100	94.375	Myotis_lucifugus
ENSOCUG00000005022	APEX1	100	93.396	ENSNGAG00000002725	-	100	93.396	Nannospalax_galili
ENSOCUG00000005022	APEX1	100	70.126	ENSNGAG00000021748	-	99	70.126	Nannospalax_galili
ENSOCUG00000005022	APEX1	87	71.014	ENSNBRG00000005334	apex1	91	66.456	Neolamprologus_brichardi
ENSOCUG00000005022	APEX1	100	95.283	ENSNLEG00000010839	APEX1	100	95.283	Nomascus_leucogenys
ENSOCUG00000005022	APEX1	100	86.478	ENSMEUG00000014519	APEX1	100	85.266	Notamacropus_eugenii
ENSOCUG00000005022	APEX1	100	96.226	ENSOPRG00000014029	APEX1	100	96.226	Ochotona_princeps
ENSOCUG00000005022	APEX1	97	75.081	ENSODEG00000004777	-	99	75.081	Octodon_degus
ENSOCUG00000005022	APEX1	100	94.025	ENSODEG00000001703	-	100	94.025	Octodon_degus
ENSOCUG00000005022	APEX1	100	71.296	ENSODEG00000006583	-	100	71.296	Octodon_degus
ENSOCUG00000005022	APEX1	87	71.583	ENSONIG00000012089	apex1	99	67.089	Oreochromis_niloticus
ENSOCUG00000005022	APEX1	90	82.456	ENSOANG00000008836	APEX1	80	77.469	Ornithorhynchus_anatinus
ENSOCUG00000005022	APEX1	99	67.296	ENSORLG00000012378	apex1	99	67.296	Oryzias_latipes
ENSOCUG00000005022	APEX1	99	67.296	ENSORLG00020021371	apex1	99	67.296	Oryzias_latipes_hni
ENSOCUG00000005022	APEX1	99	67.296	ENSORLG00015020089	apex1	99	67.296	Oryzias_latipes_hsok
ENSOCUG00000005022	APEX1	99	66.352	ENSOMEG00000018876	apex1	99	66.352	Oryzias_melastigma
ENSOCUG00000005022	APEX1	98	84.295	ENSOGAG00000029355	-	100	84.295	Otolemur_garnettii
ENSOCUG00000005022	APEX1	100	94.340	ENSOGAG00000013335	-	100	94.340	Otolemur_garnettii
ENSOCUG00000005022	APEX1	100	94.025	ENSOARG00000019740	-	100	94.025	Ovis_aries
ENSOCUG00000005022	APEX1	99	79.430	ENSOARG00000014424	-	100	79.430	Ovis_aries
ENSOCUG00000005022	APEX1	97	89.935	ENSOARG00000001876	-	100	89.935	Ovis_aries
ENSOCUG00000005022	APEX1	100	94.969	ENSPPAG00000038760	APEX1	100	94.969	Pan_paniscus
ENSOCUG00000005022	APEX1	100	95.912	ENSPPRG00000011794	APEX1	100	95.912	Panthera_pardus
ENSOCUG00000005022	APEX1	100	95.597	ENSPTIG00000014829	APEX1	100	95.597	Panthera_tigris_altaica
ENSOCUG00000005022	APEX1	100	94.969	ENSPTRG00000006093	APEX1	100	94.969	Pan_troglodytes
ENSOCUG00000005022	APEX1	100	94.654	ENSPANG00000022757	APEX1	100	94.654	Papio_anubis
ENSOCUG00000005022	APEX1	87	69.314	ENSPKIG00000003504	apex1	100	65.421	Paramormyrops_kingsleyae
ENSOCUG00000005022	APEX1	76	66.667	ENSPMGG00000016596	apex1	73	66.667	Periophthalmus_magnuspinnatus
ENSOCUG00000005022	APEX1	100	94.654	ENSPEMG00000019097	Apex1	100	94.654	Peromyscus_maniculatus_bairdii
ENSOCUG00000005022	APEX1	94	65.333	ENSPMAG00000007275	-	95	67.972	Petromyzon_marinus
ENSOCUG00000005022	APEX1	100	84.326	ENSPCIG00000023274	APEX1	100	85.670	Phascolarctos_cinereus
ENSOCUG00000005022	APEX1	88	72.760	ENSPFOG00000004178	apex1	99	67.405	Poecilia_formosa
ENSOCUG00000005022	APEX1	88	72.401	ENSPLAG00000012779	apex1	99	67.823	Poecilia_latipinna
ENSOCUG00000005022	APEX1	88	72.760	ENSPMEG00000019623	apex1	99	67.405	Poecilia_mexicana
ENSOCUG00000005022	APEX1	88	72.401	ENSPREG00000014298	apex1	99	67.089	Poecilia_reticulata
ENSOCUG00000005022	APEX1	100	94.340	ENSPPYG00000005565	APEX1	100	94.340	Pongo_abelii
ENSOCUG00000005022	APEX1	100	92.453	ENSPCAG00000010376	APEX1	100	92.453	Procavia_capensis
ENSOCUG00000005022	APEX1	100	95.597	ENSPCOG00000021564	APEX1	100	95.597	Propithecus_coquereli
ENSOCUG00000005022	APEX1	100	94.375	ENSPVAG00000010736	APEX1	100	94.375	Pteropus_vampyrus
ENSOCUG00000005022	APEX1	87	71.377	ENSPNYG00000023940	apex1	99	66.772	Pundamilia_nyererei
ENSOCUG00000005022	APEX1	93	66.216	ENSPNAG00000020897	apex1	96	66.102	Pygocentrus_nattereri
ENSOCUG00000005022	APEX1	100	94.340	ENSRNOG00000009663	Apex1	100	94.340	Rattus_norvegicus
ENSOCUG00000005022	APEX1	100	94.969	ENSRBIG00000038325	APEX1	99	94.969	Rhinopithecus_bieti
ENSOCUG00000005022	APEX1	100	81.132	ENSSBOG00000031372	-	100	81.270	Saimiri_boliviensis_boliviensis
ENSOCUG00000005022	APEX1	100	96.226	ENSSBOG00000018921	-	100	96.226	Saimiri_boliviensis_boliviensis
ENSOCUG00000005022	APEX1	100	83.333	ENSSHAG00000013524	APEX1	100	83.333	Sarcophilus_harrisii
ENSOCUG00000005022	APEX1	100	62.893	ENSSFOG00015001948	apex1	100	61.950	Scleropages_formosus
ENSOCUG00000005022	APEX1	87	69.784	ENSSMAG00000013348	apex1	99	65.190	Scophthalmus_maximus
ENSOCUG00000005022	APEX1	99	65.823	ENSSDUG00000016377	apex1	99	65.823	Seriola_dumerili
ENSOCUG00000005022	APEX1	99	66.456	ENSSLDG00000023005	apex1	99	66.456	Seriola_lalandi_dorsalis
ENSOCUG00000005022	APEX1	89	72.887	ENSSPUG00000000531	APEX1	96	72.887	Sphenodon_punctatus
ENSOCUG00000005022	APEX1	99	65.190	ENSSPAG00000000458	apex1	99	65.190	Stegastes_partitus
ENSOCUG00000005022	APEX1	98	55.346	ENSSSCG00000039705	-	100	55.247	Sus_scrofa
ENSOCUG00000005022	APEX1	100	94.340	ENSSSCG00000040060	-	100	94.340	Sus_scrofa
ENSOCUG00000005022	APEX1	74	60.169	ENSTGUG00000014378	APEX1	100	60.169	Taeniopygia_guttata
ENSOCUG00000005022	APEX1	87	67.626	ENSTRUG00000004268	apex1	95	62.305	Takifugu_rubripes
ENSOCUG00000005022	APEX1	99	64.241	ENSTNIG00000005778	apex1	99	64.241	Tetraodon_nigroviridis
ENSOCUG00000005022	APEX1	100	91.509	ENSTBEG00000006405	APEX1	100	91.509	Tupaia_belangeri
ENSOCUG00000005022	APEX1	74	95.763	ENSTTRG00000007860	APEX1	100	95.763	Tursiops_truncatus
ENSOCUG00000005022	APEX1	100	95.283	ENSUAMG00000010457	APEX1	100	95.283	Ursus_americanus
ENSOCUG00000005022	APEX1	100	95.283	ENSUMAG00000009178	APEX1	100	95.283	Ursus_maritimus
ENSOCUG00000005022	APEX1	74	90.678	ENSVPAG00000005083	APEX1	100	90.678	Vicugna_pacos
ENSOCUG00000005022	APEX1	100	95.283	ENSVVUG00000009010	APEX1	100	95.283	Vulpes_vulpes
ENSOCUG00000005022	APEX1	100	66.667	ENSXETG00000024773	apex1	100	66.667	Xenopus_tropicalis
ENSOCUG00000005022	APEX1	88	72.401	ENSXCOG00000015233	apex1	99	67.722	Xiphophorus_couchianus
ENSOCUG00000005022	APEX1	100	67.296	ENSXMAG00000006195	apex1	99	67.722	Xiphophorus_maculatus