EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000005887 (Gene tree)
Gene ID: 100339791
Gene Symbol: SMG7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 49788 bases
Position: chrGL018994:51379-101166
Accession: 16792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000018108	EST1	PF10374.9	1.4e-25	1	1
ENSOCUP00000018108	EST1_DNA_bind	PF10373.9	1.8e-56	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000028352	SMG7-201	4403	-	ENSOCUP00000018108	1221 (aa)	-	G1TMA0

Gene Model

Click here to download ENSOCUG00000005887's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000005887's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000005887	SMG7	95	89.915	ENSG00000116698	SMG7	100	95.333	Homo_sapiens
ENSOCUG00000005887	SMG7	83	69.910	ENSAPOG00000009611	smg7	95	70.499	Acanthochromis_polyacanthus
ENSOCUG00000005887	SMG7	90	86.288	ENSAMEG00000002357	SMG7	100	86.114	Ailuropoda_melanoleuca
ENSOCUG00000005887	SMG7	80	69.841	ENSACIG00000015152	smg7	100	58.390	Amphilophus_citrinellus
ENSOCUG00000005887	SMG7	93	62.531	ENSAOCG00000013538	smg7	99	63.171	Amphiprion_ocellaris
ENSOCUG00000005887	SMG7	93	62.397	ENSAPEG00000007851	smg7	99	63.036	Amphiprion_percula
ENSOCUG00000005887	SMG7	93	59.754	ENSATEG00000006931	smg7	99	60.758	Anabas_testudineus
ENSOCUG00000005887	SMG7	92	77.008	ENSAPLG00000015811	SMG7	99	76.754	Anas_platyrhynchos
ENSOCUG00000005887	SMG7	92	79.058	ENSACAG00000014989	SMG7	99	79.479	Anolis_carolinensis
ENSOCUG00000005887	SMG7	95	86.184	ENSANAG00000028114	SMG7	100	86.020	Aotus_nancymaae
ENSOCUG00000005887	SMG7	92	62.046	ENSACLG00000022079	smg7	99	61.940	Astatotilapia_calliptera
ENSOCUG00000005887	SMG7	92	64.178	ENSAMXG00000020809	smg7	99	64.543	Astyanax_mexicanus
ENSOCUG00000005887	SMG7	95	89.744	ENSBTAG00000008003	SMG7	100	89.573	Bos_taurus
ENSOCUG00000005887	SMG7	95	89.880	ENSCJAG00000005135	SMG7	100	89.708	Callithrix_jacchus
ENSOCUG00000005887	SMG7	95	89.487	ENSCAFG00000013276	SMG7	100	89.316	Canis_familiaris
ENSOCUG00000005887	SMG7	95	89.487	ENSCAFG00020015475	SMG7	100	89.316	Canis_lupus_dingo
ENSOCUG00000005887	SMG7	92	90.115	ENSCHIG00000018192	SMG7	99	89.938	Capra_hircus
ENSOCUG00000005887	SMG7	95	89.316	ENSTSYG00000002667	SMG7	100	89.145	Carlito_syrichta
ENSOCUG00000005887	SMG7	95	89.966	ENSCPOG00000008906	SMG7	100	89.794	Cavia_porcellus
ENSOCUG00000005887	SMG7	90	86.288	ENSCCAG00000028596	SMG7	100	86.114	Cebus_capucinus
ENSOCUG00000005887	SMG7	95	90.000	ENSCATG00000011063	SMG7	100	89.829	Cercocebus_atys
ENSOCUG00000005887	SMG7	95	89.829	ENSCLAG00000010751	SMG7	100	89.817	Chinchilla_lanigera
ENSOCUG00000005887	SMG7	95	89.829	ENSCSAG00000012654	SMG7	100	89.658	Chlorocebus_sabaeus
ENSOCUG00000005887	SMG7	85	82.521	ENSCHOG00000010522	SMG7	93	82.904	Choloepus_hoffmanni
ENSOCUG00000005887	SMG7	92	82.472	ENSCPBG00000015724	SMG7	99	82.303	Chrysemys_picta_bellii
ENSOCUG00000005887	SMG7	90	86.376	ENSCANG00000015680	SMG7	100	86.201	Colobus_angolensis_palliatus
ENSOCUG00000005887	SMG7	95	88.765	ENSCGRG00001013705	Smg7	100	88.593	Cricetulus_griseus_chok1gshd
ENSOCUG00000005887	SMG7	94	88.773	ENSCGRG00000018401	Smg7	100	88.599	Cricetulus_griseus_crigri
ENSOCUG00000005887	SMG7	85	68.718	ENSCVAG00000011842	smg7	99	67.692	Cyprinodon_variegatus
ENSOCUG00000005887	SMG7	92	63.553	ENSDARG00000060767	smg7	99	63.470	Danio_rerio
ENSOCUG00000005887	SMG7	94	89.208	ENSDORG00000007331	Smg7	100	89.034	Dipodomys_ordii
ENSOCUG00000005887	SMG7	89	89.690	ENSETEG00000002654	SMG7	99	89.690	Echinops_telfairi
ENSOCUG00000005887	SMG7	95	90.000	ENSEASG00005006524	SMG7	100	89.829	Equus_asinus_asinus
ENSOCUG00000005887	SMG7	92	96.175	ENSECAG00000004313	SMG7	100	95.924	Equus_caballus
ENSOCUG00000005887	SMG7	88	90.314	ENSEEUG00000002024	SMG7	92	90.314	Erinaceus_europaeus
ENSOCUG00000005887	SMG7	92	62.500	ENSELUG00000010293	smg7	99	62.862	Esox_lucius
ENSOCUG00000005887	SMG7	95	89.735	ENSFCAG00000010900	SMG7	99	90.941	Felis_catus
ENSOCUG00000005887	SMG7	91	77.806	ENSFALG00000003047	SMG7	100	77.551	Ficedula_albicollis
ENSOCUG00000005887	SMG7	92	90.274	ENSFDAG00000012121	SMG7	99	89.929	Fukomys_damarensis
ENSOCUG00000005887	SMG7	93	59.155	ENSFHEG00000011073	smg7	99	58.553	Fundulus_heteroclitus
ENSOCUG00000005887	SMG7	82	66.860	ENSGMOG00000004916	smg7	92	66.860	Gadus_morhua
ENSOCUG00000005887	SMG7	92	76.962	ENSGALG00000004667	SMG7	99	76.624	Gallus_gallus
ENSOCUG00000005887	SMG7	93	58.906	ENSGAFG00000019000	smg7	99	58.784	Gambusia_affinis
ENSOCUG00000005887	SMG7	90	63.389	ENSGACG00000001634	smg7	99	63.509	Gasterosteus_aculeatus
ENSOCUG00000005887	SMG7	95	90.000	ENSGGOG00000002342	SMG7	100	89.829	Gorilla_gorilla
ENSOCUG00000005887	SMG7	92	62.252	ENSHBUG00000003726	smg7	98	64.417	Haplochromis_burtoni
ENSOCUG00000005887	SMG7	91	89.750	ENSHGLG00000009353	SMG7	100	89.572	Heterocephalus_glaber_female
ENSOCUG00000005887	SMG7	91	88.057	ENSHGLG00100009637	-	100	87.879	Heterocephalus_glaber_male
ENSOCUG00000005887	SMG7	92	82.348	ENSHGLG00100004878	-	99	82.171	Heterocephalus_glaber_male
ENSOCUG00000005887	SMG7	92	64.226	ENSIPUG00000016997	smg7	99	64.310	Ictalurus_punctatus
ENSOCUG00000005887	SMG7	94	90.165	ENSSTOG00000000401	SMG7	100	89.991	Ictidomys_tridecemlineatus
ENSOCUG00000005887	SMG7	92	88.438	ENSJJAG00000012351	Smg7	99	88.261	Jaculus_jaculus
ENSOCUG00000005887	SMG7	90	56.805	ENSKMAG00000004900	smg7	100	56.889	Kryptolebias_marmoratus
ENSOCUG00000005887	SMG7	92	60.067	ENSLBEG00000002983	smg7	99	60.233	Labrus_bergylta
ENSOCUG00000005887	SMG7	92	72.483	ENSLACG00000000972	SMG7	99	72.396	Latimeria_chalumnae
ENSOCUG00000005887	SMG7	93	64.925	ENSLOCG00000002010	smg7	99	65.091	Lepisosteus_oculatus
ENSOCUG00000005887	SMG7	94	89.991	ENSLAFG00000008186	SMG7	100	89.817	Loxodonta_africana
ENSOCUG00000005887	SMG7	95	90.000	ENSMFAG00000031653	SMG7	100	89.829	Macaca_fascicularis
ENSOCUG00000005887	SMG7	95	90.000	ENSMMUG00000018458	SMG7	100	89.829	Macaca_mulatta
ENSOCUG00000005887	SMG7	90	86.376	ENSMNEG00000034798	SMG7	100	86.201	Macaca_nemestrina
ENSOCUG00000005887	SMG7	95	90.000	ENSMLEG00000037170	SMG7	100	89.829	Mandrillus_leucophaeus
ENSOCUG00000005887	SMG7	81	61.953	ENSMAMG00000018733	smg7	85	61.825	Mastacembelus_armatus
ENSOCUG00000005887	SMG7	92	62.376	ENSMZEG00005015247	smg7	99	62.023	Maylandia_zebra
ENSOCUG00000005887	SMG7	91	77.273	ENSMGAG00000001561	SMG7	99	76.624	Meleagris_gallopavo
ENSOCUG00000005887	SMG7	94	89.034	ENSMAUG00000019484	Smg7	100	88.860	Mesocricetus_auratus
ENSOCUG00000005887	SMG7	94	90.252	ENSMICG00000007145	SMG7	100	89.991	Microcebus_murinus
ENSOCUG00000005887	SMG7	94	88.947	ENSMOCG00000020748	Smg7	100	88.773	Microtus_ochrogaster
ENSOCUG00000005887	SMG7	92	57.644	ENSMMOG00000001524	smg7	99	58.779	Mola_mola
ENSOCUG00000005887	SMG7	85	80.861	ENSMODG00000007139	SMG7	99	80.861	Monodelphis_domestica
ENSOCUG00000005887	SMG7	93	61.716	ENSMALG00000000061	smg7	93	64.179	Monopterus_albus
ENSOCUG00000005887	SMG7	94	88.947	MGP_CAROLIEiJ_G0014704	Smg7	100	88.512	Mus_caroli
ENSOCUG00000005887	SMG7	94	88.947	ENSMUSG00000042772	Smg7	100	88.773	Mus_musculus
ENSOCUG00000005887	SMG7	94	89.034	MGP_PahariEiJ_G0027940	Smg7	100	88.860	Mus_pahari
ENSOCUG00000005887	SMG7	94	89.034	MGP_SPRETEiJ_G0015511	Smg7	100	88.860	Mus_spretus
ENSOCUG00000005887	SMG7	91	89.929	ENSMPUG00000011732	SMG7	97	89.750	Mustela_putorius_furo
ENSOCUG00000005887	SMG7	92	89.673	ENSMLUG00000015417	SMG7	99	89.497	Myotis_lucifugus
ENSOCUG00000005887	SMG7	94	89.295	ENSNGAG00000009836	Smg7	100	88.860	Nannospalax_galili
ENSOCUG00000005887	SMG7	91	56.145	ENSNBRG00000024343	smg7	99	55.462	Neolamprologus_brichardi
ENSOCUG00000005887	SMG7	95	90.085	ENSNLEG00000018018	SMG7	100	89.915	Nomascus_leucogenys
ENSOCUG00000005887	SMG7	72	79.915	ENSMEUG00000004681	SMG7	77	80.056	Notamacropus_eugenii
ENSOCUG00000005887	SMG7	89	84.658	ENSOPRG00000013942	SMG7	96	84.384	Ochotona_princeps
ENSOCUG00000005887	SMG7	94	89.817	ENSODEG00000010390	SMG7	100	89.643	Octodon_degus
ENSOCUG00000005887	SMG7	92	59.587	ENSONIG00000000277	smg7	99	59.635	Oreochromis_niloticus
ENSOCUG00000005887	SMG7	91	84.752	ENSOANG00000000994	SMG7	100	84.752	Ornithorhynchus_anatinus
ENSOCUG00000005887	SMG7	93	60.667	ENSORLG00000007314	smg7	70	92.105	Oryzias_latipes
ENSOCUG00000005887	SMG7	93	61.083	ENSORLG00020015779	smg7	70	92.105	Oryzias_latipes_hni
ENSOCUG00000005887	SMG7	92	62.597	ENSORLG00015012289	smg7	99	60.349	Oryzias_latipes_hsok
ENSOCUG00000005887	SMG7	93	61.213	ENSOMEG00000002328	smg7	99	60.714	Oryzias_melastigma
ENSOCUG00000005887	SMG7	89	90.146	ENSOGAG00000003107	SMG7	93	89.964	Otolemur_garnettii
ENSOCUG00000005887	SMG7	95	89.744	ENSOARG00000001352	SMG7	100	89.573	Ovis_aries
ENSOCUG00000005887	SMG7	90	86.463	ENSPPAG00000031619	SMG7	100	86.288	Pan_paniscus
ENSOCUG00000005887	SMG7	95	89.906	ENSPPRG00000011222	SMG7	100	89.735	Panthera_pardus
ENSOCUG00000005887	SMG7	90	90.372	ENSPTIG00000007242	SMG7	100	86.114	Panthera_tigris_altaica
ENSOCUG00000005887	SMG7	89	90.876	ENSPTRG00000001764	SMG7	100	86.288	Pan_troglodytes
ENSOCUG00000005887	SMG7	95	90.000	ENSPANG00000004520	SMG7	100	89.829	Papio_anubis
ENSOCUG00000005887	SMG7	92	61.792	ENSPKIG00000007242	smg7	99	62.996	Paramormyrops_kingsleyae
ENSOCUG00000005887	SMG7	93	85.211	ENSPSIG00000012201	SMG7	99	84.683	Pelodiscus_sinensis
ENSOCUG00000005887	SMG7	51	53.061	ENSPMGG00000021833	smg7	91	52.041	Periophthalmus_magnuspinnatus
ENSOCUG00000005887	SMG7	94	88.425	ENSPEMG00000011315	Smg7	100	88.251	Peromyscus_maniculatus_bairdii
ENSOCUG00000005887	SMG7	92	83.898	ENSPCIG00000003786	SMG7	87	96.178	Phascolarctos_cinereus
ENSOCUG00000005887	SMG7	93	60.809	ENSPFOG00000019219	smg7	99	61.258	Poecilia_formosa
ENSOCUG00000005887	SMG7	93	58.940	ENSPLAG00000001446	smg7	99	59.102	Poecilia_latipinna
ENSOCUG00000005887	SMG7	90	58.753	ENSPMEG00000005218	smg7	99	58.919	Poecilia_mexicana
ENSOCUG00000005887	SMG7	81	58.741	ENSPREG00000019039	smg7	92	59.040	Poecilia_reticulata
ENSOCUG00000005887	SMG7	92	82.867	ENSPPYG00000000427	SMG7	99	82.697	Pongo_abelii
ENSOCUG00000005887	SMG7	83	85.776	ENSPCAG00000008360	SMG7	88	85.776	Procavia_capensis
ENSOCUG00000005887	SMG7	95	90.171	ENSPCOG00000011996	SMG7	100	89.915	Propithecus_coquereli
ENSOCUG00000005887	SMG7	85	85.577	ENSPVAG00000000851	SMG7	89	85.577	Pteropus_vampyrus
ENSOCUG00000005887	SMG7	92	62.272	ENSPNYG00000007643	smg7	99	61.877	Pundamilia_nyererei
ENSOCUG00000005887	SMG7	92	64.130	ENSPNAG00000011374	smg7	99	64.047	Pygocentrus_nattereri
ENSOCUG00000005887	SMG7	95	89.117	ENSRNOG00000027962	Smg7	100	91.005	Rattus_norvegicus
ENSOCUG00000005887	SMG7	95	90.000	ENSRBIG00000036316	SMG7	100	89.829	Rhinopithecus_bieti
ENSOCUG00000005887	SMG7	95	90.000	ENSRROG00000035719	SMG7	100	89.829	Rhinopithecus_roxellana
ENSOCUG00000005887	SMG7	92	90.203	ENSSBOG00000023454	SMG7	99	90.026	Saimiri_boliviensis_boliviensis
ENSOCUG00000005887	SMG7	92	80.136	ENSSHAG00000013147	SMG7	99	79.763	Sarcophilus_harrisii
ENSOCUG00000005887	SMG7	92	64.869	ENSSFOG00015017252	smg7	99	66.500	Scleropages_formosus
ENSOCUG00000005887	SMG7	92	62.948	ENSSMAG00000006067	smg7	99	62.698	Scophthalmus_maximus
ENSOCUG00000005887	SMG7	88	70.654	ENSSDUG00000017543	smg7	99	60.082	Seriola_dumerili
ENSOCUG00000005887	SMG7	93	76.871	ENSSPUG00000002064	SMG7	99	76.703	Sphenodon_punctatus
ENSOCUG00000005887	SMG7	91	60.304	ENSSPAG00000008733	smg7	98	60.440	Stegastes_partitus
ENSOCUG00000005887	SMG7	95	89.744	ENSSSCG00000015558	SMG7	100	89.573	Sus_scrofa
ENSOCUG00000005887	SMG7	92	76.962	ENSTGUG00000003928	SMG7	100	76.203	Taeniopygia_guttata
ENSOCUG00000005887	SMG7	93	61.023	ENSTNIG00000002802	smg7	99	61.017	Tetraodon_nigroviridis
ENSOCUG00000005887	SMG7	71	86.667	ENSTBEG00000003220	SMG7	75	87.097	Tupaia_belangeri
ENSOCUG00000005887	SMG7	89	90.320	ENSTTRG00000014778	SMG7	94	90.320	Tursiops_truncatus
ENSOCUG00000005887	SMG7	90	85.896	ENSUAMG00000017473	SMG7	100	85.714	Ursus_americanus
ENSOCUG00000005887	SMG7	90	90.082	ENSUMAG00000016389	SMG7	100	89.900	Ursus_maritimus
ENSOCUG00000005887	SMG7	96	89.559	ENSVVUG00000008976	SMG7	99	90.708	Vulpes_vulpes
ENSOCUG00000005887	SMG7	93	63.940	ENSXETG00000012528	smg7	99	62.929	Xenopus_tropicalis
ENSOCUG00000005887	SMG7	92	59.068	ENSXMAG00000007123	smg7	99	59.235	Xiphophorus_maculatus