EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000006153 (Gene tree)
Gene ID: 100358423
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 80332 bases
Position: chr8:44800307-44880638
Accession: 100358423
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000005332	RRM_1	PF00076.22	1.9e-32	1	2
ENSOCUP00000005332	RRM_1	PF00076.22	1.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000006154	PSPC1-201	2460	XM_008259953	ENSOCUP00000005332	522 (aa)	XP_008258175	G1SQF9

Gene Model

Click here to download ENSOCUG00000006153's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000006153's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000006153	PSPC1	88	59.322	ENSOCUG00000001877	SFPQ	73	67.374
ENSOCUG00000006153	PSPC1	75	42.211	ENSOCUG00000024801	-	78	43.207
ENSOCUG00000006153	PSPC1	88	60.304	ENSOCUG00000021848	-	75	69.638

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000006153	PSPC1	100	98.279	ENSG00000121390	PSPC1	100	98.279	Homo_sapiens
ENSOCUG00000006153	PSPC1	88	70.440	ENSAPOG00000015946	pspc1	79	73.364	Acanthochromis_polyacanthus
ENSOCUG00000006153	PSPC1	100	97.706	ENSAMEG00000017420	PSPC1	100	97.706	Ailuropoda_melanoleuca
ENSOCUG00000006153	PSPC1	99	57.514	ENSACIG00000018695	pspc1	87	59.362	Amphilophus_citrinellus
ENSOCUG00000006153	PSPC1	88	69.520	ENSAOCG00000005279	pspc1	78	72.897	Amphiprion_ocellaris
ENSOCUG00000006153	PSPC1	88	70.638	ENSAPEG00000015927	pspc1	79	72.897	Amphiprion_percula
ENSOCUG00000006153	PSPC1	97	55.344	ENSATEG00000004878	pspc1	76	62.169	Anabas_testudineus
ENSOCUG00000006153	PSPC1	77	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSOCUG00000006153	PSPC1	88	61.075	ENSAPLG00000003643	SFPQ	69	69.315	Anas_platyrhynchos
ENSOCUG00000006153	PSPC1	99	83.302	ENSACAG00000002093	PSPC1	88	91.845	Anolis_carolinensis
ENSOCUG00000006153	PSPC1	90	52.610	ENSACAG00000013307	-	57	64.075	Anolis_carolinensis
ENSOCUG00000006153	PSPC1	100	98.088	ENSANAG00000000059	PSPC1	100	98.088	Aotus_nancymaae
ENSOCUG00000006153	PSPC1	99	56.801	ENSACLG00000027220	pspc1	87	59.013	Astatotilapia_calliptera
ENSOCUG00000006153	PSPC1	99	63.620	ENSAMXG00000036881	pspc1	81	72.297	Astyanax_mexicanus
ENSOCUG00000006153	PSPC1	100	95.411	ENSBTAG00000003934	PSPC1	100	95.411	Bos_taurus
ENSOCUG00000006153	PSPC1	100	98.088	ENSCJAG00000004554	PSPC1	100	98.088	Callithrix_jacchus
ENSOCUG00000006153	PSPC1	100	97.897	ENSCAFG00020002009	PSPC1	100	97.897	Canis_lupus_dingo
ENSOCUG00000006153	PSPC1	100	95.411	ENSCHIG00000016708	PSPC1	100	95.411	Capra_hircus
ENSOCUG00000006153	PSPC1	80	88.152	ENSTSYG00000032882	PSPC1	93	85.511	Carlito_syrichta
ENSOCUG00000006153	PSPC1	100	97.132	ENSCPOG00000000395	PSPC1	100	97.132	Cavia_porcellus
ENSOCUG00000006153	PSPC1	100	98.088	ENSCCAG00000033498	PSPC1	100	98.088	Cebus_capucinus
ENSOCUG00000006153	PSPC1	100	97.897	ENSCATG00000036434	PSPC1	100	97.897	Cercocebus_atys
ENSOCUG00000006153	PSPC1	88	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSOCUG00000006153	PSPC1	100	91.396	ENSCHOG00000008913	PSPC1	100	91.205	Choloepus_hoffmanni
ENSOCUG00000006153	PSPC1	99	86.389	ENSCPBG00000020859	PSPC1	89	94.218	Chrysemys_picta_bellii
ENSOCUG00000006153	PSPC1	59	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSOCUG00000006153	PSPC1	77	85.679	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSOCUG00000006153	PSPC1	100	97.132	ENSCGRG00001018368	Pspc1	100	97.132	Cricetulus_griseus_chok1gshd
ENSOCUG00000006153	PSPC1	100	97.132	ENSCGRG00000011724	Pspc1	100	97.132	Cricetulus_griseus_crigri
ENSOCUG00000006153	PSPC1	87	66.667	ENSCVAG00000007679	-	78	68.884	Cyprinodon_variegatus
ENSOCUG00000006153	PSPC1	99	66.048	ENSDARG00000006621	pspc1	100	67.150	Danio_rerio
ENSOCUG00000006153	PSPC1	100	97.132	ENSDNOG00000011078	PSPC1	100	97.132	Dasypus_novemcinctus
ENSOCUG00000006153	PSPC1	100	94.646	ENSDORG00000016050	Pspc1	100	94.646	Dipodomys_ordii
ENSOCUG00000006153	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSOCUG00000006153	PSPC1	88	59.711	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSOCUG00000006153	PSPC1	59	46.407	ENSEBUG00000010133	pspc1	75	49.653	Eptatretus_burgeri
ENSOCUG00000006153	PSPC1	100	97.132	ENSEASG00005000119	PSPC1	100	97.132	Equus_asinus_asinus
ENSOCUG00000006153	PSPC1	100	97.132	ENSECAG00000017286	PSPC1	100	97.132	Equus_caballus
ENSOCUG00000006153	PSPC1	73	93.443	ENSEEUG00000011288	-	89	93.443	Erinaceus_europaeus
ENSOCUG00000006153	PSPC1	99	65.746	ENSELUG00000003746	pspc1	78	81.651	Esox_lucius
ENSOCUG00000006153	PSPC1	100	97.897	ENSFCAG00000027841	PSPC1	100	97.897	Felis_catus
ENSOCUG00000006153	PSPC1	89	94.647	ENSFALG00000008750	PSPC1	88	94.647	Ficedula_albicollis
ENSOCUG00000006153	PSPC1	100	94.837	ENSFDAG00000002617	PSPC1	100	94.837	Fukomys_damarensis
ENSOCUG00000006153	PSPC1	88	66.595	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSOCUG00000006153	PSPC1	99	87.500	ENSGALG00000017142	PSPC1	89	94.647	Gallus_gallus
ENSOCUG00000006153	PSPC1	64	75.434	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSOCUG00000006153	PSPC1	88	65.733	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSOCUG00000006153	PSPC1	92	59.129	ENSGAGG00000017325	-	56	68.493	Gopherus_agassizii
ENSOCUG00000006153	PSPC1	99	86.200	ENSGAGG00000019164	PSPC1	89	94.218	Gopherus_agassizii
ENSOCUG00000006153	PSPC1	100	98.088	ENSGGOG00000003414	PSPC1	100	98.088	Gorilla_gorilla
ENSOCUG00000006153	PSPC1	99	63.904	ENSHBUG00000001139	pspc1	87	69.742	Haplochromis_burtoni
ENSOCUG00000006153	PSPC1	100	96.750	ENSHGLG00000018811	PSPC1	100	96.750	Heterocephalus_glaber_female
ENSOCUG00000006153	PSPC1	67	92.571	ENSHGLG00100007962	PSPC1	100	92.571	Heterocephalus_glaber_male
ENSOCUG00000006153	PSPC1	78	66.829	ENSHCOG00000013251	pspc1	82	69.837	Hippocampus_comes
ENSOCUG00000006153	PSPC1	99	67.598	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSOCUG00000006153	PSPC1	100	98.088	ENSSTOG00000026833	PSPC1	100	98.088	Ictidomys_tridecemlineatus
ENSOCUG00000006153	PSPC1	100	97.132	ENSJJAG00000018334	Pspc1	100	97.132	Jaculus_jaculus
ENSOCUG00000006153	PSPC1	88	55.844	ENSKMAG00000013525	-	84	54.526	Kryptolebias_marmoratus
ENSOCUG00000006153	PSPC1	96	64.491	ENSLBEG00000004474	pspc1	76	71.734	Labrus_bergylta
ENSOCUG00000006153	PSPC1	99	76.296	ENSLACG00000010762	PSPC1	88	85.129	Latimeria_chalumnae
ENSOCUG00000006153	PSPC1	88	84.165	ENSLOCG00000010832	pspc1	91	84.165	Lepisosteus_oculatus
ENSOCUG00000006153	PSPC1	100	97.132	ENSLAFG00000010968	PSPC1	100	97.132	Loxodonta_africana
ENSOCUG00000006153	PSPC1	100	97.897	ENSMFAG00000032728	PSPC1	100	97.897	Macaca_fascicularis
ENSOCUG00000006153	PSPC1	100	97.897	ENSMMUG00000020262	PSPC1	100	97.897	Macaca_mulatta
ENSOCUG00000006153	PSPC1	100	97.897	ENSMNEG00000027401	PSPC1	100	97.897	Macaca_nemestrina
ENSOCUG00000006153	PSPC1	100	98.997	ENSMLEG00000039043	PSPC1	99	100.000	Mandrillus_leucophaeus
ENSOCUG00000006153	PSPC1	88	67.423	ENSMAMG00000004333	pspc1	89	61.715	Mastacembelus_armatus
ENSOCUG00000006153	PSPC1	99	56.801	ENSMZEG00005005726	pspc1	87	59.013	Maylandia_zebra
ENSOCUG00000006153	PSPC1	77	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSOCUG00000006153	PSPC1	88	91.775	ENSMAUG00000021067	Pspc1	99	91.126	Mesocricetus_auratus
ENSOCUG00000006153	PSPC1	100	97.706	ENSMICG00000013970	PSPC1	100	97.706	Microcebus_murinus
ENSOCUG00000006153	PSPC1	100	97.132	ENSMOCG00000006060	Pspc1	100	97.132	Microtus_ochrogaster
ENSOCUG00000006153	PSPC1	92	43.212	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSOCUG00000006153	PSPC1	95	95.161	ENSMODG00000008029	PSPC1	78	96.701	Monodelphis_domestica
ENSOCUG00000006153	PSPC1	88	69.528	ENSMALG00000008914	pspc1	89	67.086	Monopterus_albus
ENSOCUG00000006153	PSPC1	100	97.137	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.137	Mus_caroli
ENSOCUG00000006153	PSPC1	100	97.328	ENSMUSG00000021938	Pspc1	100	97.328	Mus_musculus
ENSOCUG00000006153	PSPC1	100	97.137	MGP_PahariEiJ_G0030359	Pspc1	100	97.137	Mus_pahari
ENSOCUG00000006153	PSPC1	100	97.328	MGP_SPRETEiJ_G0020232	Pspc1	100	97.328	Mus_spretus
ENSOCUG00000006153	PSPC1	100	97.514	ENSMPUG00000013347	PSPC1	100	97.514	Mustela_putorius_furo
ENSOCUG00000006153	PSPC1	100	96.578	ENSMLUG00000017663	PSPC1	100	96.578	Myotis_lucifugus
ENSOCUG00000006153	PSPC1	100	97.323	ENSNGAG00000011271	Pspc1	100	97.323	Nannospalax_galili
ENSOCUG00000006153	PSPC1	74	64.070	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSOCUG00000006153	PSPC1	100	98.088	ENSNLEG00000001294	PSPC1	100	98.088	Nomascus_leucogenys
ENSOCUG00000006153	PSPC1	84	96.094	ENSMEUG00000000476	PSPC1	84	96.094	Notamacropus_eugenii
ENSOCUG00000006153	PSPC1	100	85.305	ENSODEG00000019012	-	100	86.011	Octodon_degus
ENSOCUG00000006153	PSPC1	100	86.042	ENSODEG00000007817	-	100	81.474	Octodon_degus
ENSOCUG00000006153	PSPC1	99	63.904	ENSONIG00000012010	pspc1	87	68.856	Oreochromis_niloticus
ENSOCUG00000006153	PSPC1	76	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSOCUG00000006153	PSPC1	99	66.031	ENSOANG00000011381	-	99	63.740	Ornithorhynchus_anatinus
ENSOCUG00000006153	PSPC1	88	70.000	ENSORLG00000004232	-	87	64.182	Oryzias_latipes
ENSOCUG00000006153	PSPC1	90	68.894	ENSORLG00020000578	PSPC1	88	63.618	Oryzias_latipes_hni
ENSOCUG00000006153	PSPC1	88	70.426	ENSORLG00015017480	pspc1	87	64.389	Oryzias_latipes_hsok
ENSOCUG00000006153	PSPC1	100	98.853	ENSOGAG00000012643	PSPC1	100	98.853	Otolemur_garnettii
ENSOCUG00000006153	PSPC1	100	91.048	ENSOARG00000014163	PSPC1	100	91.048	Ovis_aries
ENSOCUG00000006153	PSPC1	89	92.275	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSOCUG00000006153	PSPC1	100	97.897	ENSPPRG00000008833	PSPC1	100	97.897	Panthera_pardus
ENSOCUG00000006153	PSPC1	100	82.409	ENSPTIG00000016917	PSPC1	100	82.409	Panthera_tigris_altaica
ENSOCUG00000006153	PSPC1	98	96.693	ENSPTRG00000005677	PSPC1	99	98.354	Pan_troglodytes
ENSOCUG00000006153	PSPC1	100	98.088	ENSPANG00000001992	PSPC1	100	98.088	Papio_anubis
ENSOCUG00000006153	PSPC1	82	78.372	ENSPKIG00000003578	pspc1	81	77.701	Paramormyrops_kingsleyae
ENSOCUG00000006153	PSPC1	99	86.629	ENSPSIG00000005168	PSPC1	89	94.004	Pelodiscus_sinensis
ENSOCUG00000006153	PSPC1	59	70.701	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSOCUG00000006153	PSPC1	100	97.706	ENSPEMG00000015214	Pspc1	100	97.706	Peromyscus_maniculatus_bairdii
ENSOCUG00000006153	PSPC1	53	45.139	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSOCUG00000006153	PSPC1	99	96.935	ENSPCIG00000017680	PSPC1	100	96.935	Phascolarctos_cinereus
ENSOCUG00000006153	PSPC1	92	67.000	ENSPFOG00000003362	pspc1	88	68.153	Poecilia_formosa
ENSOCUG00000006153	PSPC1	70	64.324	ENSPLAG00000004407	-	52	60.377	Poecilia_latipinna
ENSOCUG00000006153	PSPC1	92	67.000	ENSPLAG00000011540	pspc1	87	68.153	Poecilia_latipinna
ENSOCUG00000006153	PSPC1	92	66.600	ENSPMEG00000008322	pspc1	87	67.728	Poecilia_mexicana
ENSOCUG00000006153	PSPC1	69	64.835	ENSPMEG00000001025	-	51	60.377	Poecilia_mexicana
ENSOCUG00000006153	PSPC1	92	67.000	ENSPREG00000007786	pspc1	87	67.728	Poecilia_reticulata
ENSOCUG00000006153	PSPC1	100	97.514	ENSPPYG00000005186	PSPC1	100	97.514	Pongo_abelii
ENSOCUG00000006153	PSPC1	67	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSOCUG00000006153	PSPC1	100	93.881	ENSPCOG00000014364	PSPC1	100	93.881	Propithecus_coquereli
ENSOCUG00000006153	PSPC1	100	92.925	ENSPVAG00000005036	PSPC1	100	93.117	Pteropus_vampyrus
ENSOCUG00000006153	PSPC1	99	56.985	ENSPNYG00000008893	pspc1	87	59.013	Pundamilia_nyererei
ENSOCUG00000006153	PSPC1	99	67.970	ENSPNAG00000016511	pspc1	89	72.611	Pygocentrus_nattereri
ENSOCUG00000006153	PSPC1	100	97.323	ENSRNOG00000020782	Pspc1	100	97.323	Rattus_norvegicus
ENSOCUG00000006153	PSPC1	93	98.152	ENSRBIG00000036057	PSPC1	100	98.152	Rhinopithecus_bieti
ENSOCUG00000006153	PSPC1	100	98.088	ENSRROG00000036334	PSPC1	100	98.088	Rhinopithecus_roxellana
ENSOCUG00000006153	PSPC1	79	88.378	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSOCUG00000006153	PSPC1	100	91.619	ENSSHAG00000004696	PSPC1	100	91.619	Sarcophilus_harrisii
ENSOCUG00000006153	PSPC1	81	79.907	ENSSFOG00015001395	pspc1	90	79.032	Scleropages_formosus
ENSOCUG00000006153	PSPC1	96	64.093	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSOCUG00000006153	PSPC1	88	68.966	ENSSDUG00000010651	pspc1	88	67.821	Seriola_dumerili
ENSOCUG00000006153	PSPC1	88	64.719	ENSSLDG00000004284	pspc1	81	62.125	Seriola_lalandi_dorsalis
ENSOCUG00000006153	PSPC1	100	88.719	ENSSARG00000000888	PSPC1	100	88.910	Sorex_araneus
ENSOCUG00000006153	PSPC1	99	74.811	ENSSPUG00000008550	PSPC1	89	80.769	Sphenodon_punctatus
ENSOCUG00000006153	PSPC1	89	53.928	ENSSPUG00000001136	-	53	61.625	Sphenodon_punctatus
ENSOCUG00000006153	PSPC1	91	67.400	ENSSPAG00000001921	pspc1	77	72.430	Stegastes_partitus
ENSOCUG00000006153	PSPC1	100	96.756	ENSSSCG00000009569	PSPC1	100	96.756	Sus_scrofa
ENSOCUG00000006153	PSPC1	89	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSOCUG00000006153	PSPC1	88	62.766	ENSTRUG00000011335	pspc1	77	66.019	Takifugu_rubripes
ENSOCUG00000006153	PSPC1	88	65.227	ENSTNIG00000010358	pspc1	84	66.587	Tetraodon_nigroviridis
ENSOCUG00000006153	PSPC1	100	77.438	ENSTBEG00000002361	PSPC1	100	74.379	Tupaia_belangeri
ENSOCUG00000006153	PSPC1	100	96.947	ENSTTRG00000003343	PSPC1	100	96.947	Tursiops_truncatus
ENSOCUG00000006153	PSPC1	67	97.436	ENSUAMG00000012309	PSPC1	100	97.436	Ursus_americanus
ENSOCUG00000006153	PSPC1	93	97.947	ENSUMAG00000013993	PSPC1	100	97.947	Ursus_maritimus
ENSOCUG00000006153	PSPC1	76	98.747	ENSVPAG00000010029	PSPC1	100	98.747	Vicugna_pacos
ENSOCUG00000006153	PSPC1	100	97.897	ENSVVUG00000006414	PSPC1	100	97.927	Vulpes_vulpes
ENSOCUG00000006153	PSPC1	66	73.803	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSOCUG00000006153	PSPC1	66	74.085	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus