EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000006230 (Gene tree)
Gene ID: 100354055
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 118446 bases
Position: chr16:16559210-16677655
Accession: 100354055
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000005394	Upf2	PF04050.14	1.4e-33	1	1
ENSOCUP00000005394	MIF4G	PF02854.19	1.5e-77	1	3
ENSOCUP00000005394	MIF4G	PF02854.19	1.5e-77	2	3
ENSOCUP00000005394	MIF4G	PF02854.19	1.5e-77	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000006231	UPF2-201	3807	XM_002717504	ENSOCUP00000005394	1269 (aa)	XP_002717550	G1SQL1

Gene Model

Click here to download ENSOCUG00000006230's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03013	RNA transport	KEGG
ocu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000006230's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000006230	UPF2	100	96.946	ENSG00000151461	UPF2	99	96.946	Homo_sapiens
ENSOCUG00000006230	UPF2	100	76.443	ENSAPOG00000015837	UPF2	100	77.301	Acanthochromis_polyacanthus
ENSOCUG00000006230	UPF2	100	97.649	ENSAMEG00000004586	UPF2	99	97.649	Ailuropoda_melanoleuca
ENSOCUG00000006230	UPF2	100	80.700	ENSACIG00000018078	UPF2	100	81.479	Amphilophus_citrinellus
ENSOCUG00000006230	UPF2	100	80.700	ENSAOCG00000016766	UPF2	99	81.790	Amphiprion_ocellaris
ENSOCUG00000006230	UPF2	100	80.778	ENSAPEG00000019084	UPF2	99	81.868	Amphiprion_percula
ENSOCUG00000006230	UPF2	100	80.605	ENSATEG00000021677	UPF2	99	81.663	Anabas_testudineus
ENSOCUG00000006230	UPF2	100	87.559	ENSAPLG00000010287	UPF2	91	91.421	Anas_platyrhynchos
ENSOCUG00000006230	UPF2	100	91.223	ENSACAG00000009259	UPF2	99	90.831	Anolis_carolinensis
ENSOCUG00000006230	UPF2	100	86.546	ENSANAG00000028451	UPF2	99	87.588	Aotus_nancymaae
ENSOCUG00000006230	UPF2	100	80.856	ENSACLG00000012696	UPF2	99	81.712	Astatotilapia_calliptera
ENSOCUG00000006230	UPF2	100	82.490	ENSAMXG00000013700	UPF2	99	82.257	Astyanax_mexicanus
ENSOCUG00000006230	UPF2	100	97.335	ENSBTAG00000000288	UPF2	99	97.335	Bos_taurus
ENSOCUG00000006230	UPF2	100	97.022	ENSCJAG00000020685	UPF2	99	97.022	Callithrix_jacchus
ENSOCUG00000006230	UPF2	100	97.571	ENSCAFG00000004839	UPF2	99	97.571	Canis_familiaris
ENSOCUG00000006230	UPF2	97	98.522	ENSCAFG00020005882	UPF2	100	98.446	Canis_lupus_dingo
ENSOCUG00000006230	UPF2	100	97.414	ENSCHIG00000020359	UPF2	99	97.414	Capra_hircus
ENSOCUG00000006230	UPF2	100	96.552	ENSTSYG00000000935	UPF2	97	98.870	Carlito_syrichta
ENSOCUG00000006230	UPF2	92	86.912	ENSCAPG00000016658	UPF2	95	86.484	Cavia_aperea
ENSOCUG00000006230	UPF2	99	94.791	ENSCPOG00000008809	UPF2	99	94.317	Cavia_porcellus
ENSOCUG00000006230	UPF2	100	90.909	ENSCCAG00000035991	UPF2	99	90.752	Cebus_capucinus
ENSOCUG00000006230	UPF2	100	97.181	ENSCATG00000032679	UPF2	99	97.181	Cercocebus_atys
ENSOCUG00000006230	UPF2	100	97.020	ENSCLAG00000011434	UPF2	99	97.020	Chinchilla_lanigera
ENSOCUG00000006230	UPF2	100	97.181	ENSCSAG00000013372	UPF2	99	97.181	Chlorocebus_sabaeus
ENSOCUG00000006230	UPF2	87	99.554	ENSCHOG00000000422	UPF2	89	99.554	Choloepus_hoffmanni
ENSOCUG00000006230	UPF2	100	93.223	ENSCPBG00000027823	UPF2	100	93.065	Chrysemys_picta_bellii
ENSOCUG00000006230	UPF2	79	48.963	ENSCSAVG00000007772	-	79	50.446	Ciona_savignyi
ENSOCUG00000006230	UPF2	100	90.443	ENSCANG00000040396	UPF2	100	90.767	Colobus_angolensis_palliatus
ENSOCUG00000006230	UPF2	100	97.100	ENSCGRG00001019347	Upf2	99	97.100	Cricetulus_griseus_chok1gshd
ENSOCUG00000006230	UPF2	100	97.100	ENSCGRG00000017993	Upf2	99	97.100	Cricetulus_griseus_crigri
ENSOCUG00000006230	UPF2	91	81.245	ENSCSEG00000003520	UPF2	91	80.240	Cynoglossus_semilaevis
ENSOCUG00000006230	UPF2	99	80.799	ENSCVAG00000006167	UPF2	100	80.094	Cyprinodon_variegatus
ENSOCUG00000006230	UPF2	100	97.649	ENSDNOG00000018160	UPF2	99	97.649	Dasypus_novemcinctus
ENSOCUG00000006230	UPF2	100	96.787	ENSDORG00000002478	Upf2	99	96.787	Dipodomys_ordii
ENSOCUG00000006230	UPF2	89	36.469	FBgn0029992	Upf2	81	42.982	Drosophila_melanogaster
ENSOCUG00000006230	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSOCUG00000006230	UPF2	69	68.507	ENSEBUG00000012448	-	87	73.154	Eptatretus_burgeri
ENSOCUG00000006230	UPF2	100	97.412	ENSEASG00005019274	UPF2	99	97.826	Equus_asinus_asinus
ENSOCUG00000006230	UPF2	100	97.490	ENSECAG00000017022	UPF2	99	97.490	Equus_caballus
ENSOCUG00000006230	UPF2	82	94.212	ENSEEUG00000007819	UPF2	82	94.212	Erinaceus_europaeus
ENSOCUG00000006230	UPF2	100	81.167	ENSELUG00000012014	UPF2	99	80.934	Esox_lucius
ENSOCUG00000006230	UPF2	100	98.324	ENSFCAG00000005785	UPF2	99	97.414	Felis_catus
ENSOCUG00000006230	UPF2	100	92.671	ENSFALG00000001889	UPF2	98	92.633	Ficedula_albicollis
ENSOCUG00000006230	UPF2	100	96.706	ENSFDAG00000014348	UPF2	99	96.706	Fukomys_damarensis
ENSOCUG00000006230	UPF2	99	81.423	ENSFHEG00000009826	UPF2	99	80.806	Fundulus_heteroclitus
ENSOCUG00000006230	UPF2	91	83.605	ENSGMOG00000005557	UPF2	100	79.581	Gadus_morhua
ENSOCUG00000006230	UPF2	100	92.717	ENSGALG00000033772	UPF2	99	92.169	Gallus_gallus
ENSOCUG00000006230	UPF2	100	79.689	ENSGAFG00000020867	UPF2	99	79.533	Gambusia_affinis
ENSOCUG00000006230	UPF2	91	84.569	ENSGACG00000001080	UPF2	100	81.323	Gasterosteus_aculeatus
ENSOCUG00000006230	UPF2	100	92.163	ENSGAGG00000002700	UPF2	99	92.476	Gopherus_agassizii
ENSOCUG00000006230	UPF2	100	96.946	ENSGGOG00000001479	UPF2	99	96.946	Gorilla_gorilla
ENSOCUG00000006230	UPF2	100	80.856	ENSHBUG00000004249	UPF2	100	81.712	Haplochromis_burtoni
ENSOCUG00000006230	UPF2	100	85.793	ENSHGLG00000003822	-	99	86.185	Heterocephalus_glaber_female
ENSOCUG00000006230	UPF2	100	97.020	ENSHGLG00000015176	-	99	97.020	Heterocephalus_glaber_female
ENSOCUG00000006230	UPF2	100	93.412	ENSHGLG00100010036	UPF2	100	93.098	Heterocephalus_glaber_male
ENSOCUG00000006230	UPF2	100	79.551	ENSHCOG00000004025	UPF2	99	78.450	Hippocampus_comes
ENSOCUG00000006230	UPF2	100	81.274	ENSIPUG00000015524	UPF2	99	81.182	Ictalurus_punctatus
ENSOCUG00000006230	UPF2	100	97.414	ENSSTOG00000013075	UPF2	99	97.414	Ictidomys_tridecemlineatus
ENSOCUG00000006230	UPF2	100	95.846	ENSJJAG00000004913	Upf2	99	95.846	Jaculus_jaculus
ENSOCUG00000006230	UPF2	92	84.576	ENSKMAG00000001071	UPF2	98	81.955	Kryptolebias_marmoratus
ENSOCUG00000006230	UPF2	100	82.016	ENSLBEG00000016394	-	99	81.910	Labrus_bergylta
ENSOCUG00000006230	UPF2	80	81.036	ENSLBEG00000000728	-	93	81.134	Labrus_bergylta
ENSOCUG00000006230	UPF2	99	79.389	ENSLACG00000015945	UPF2	100	79.232	Latimeria_chalumnae
ENSOCUG00000006230	UPF2	99	85.714	ENSLOCG00000015698	UPF2	99	85.714	Lepisosteus_oculatus
ENSOCUG00000006230	UPF2	100	97.103	ENSMFAG00000043865	UPF2	99	97.103	Macaca_fascicularis
ENSOCUG00000006230	UPF2	100	97.103	ENSMMUG00000008241	UPF2	99	97.103	Macaca_mulatta
ENSOCUG00000006230	UPF2	81	96.512	ENSMNEG00000008062	UPF2	100	96.512	Macaca_nemestrina
ENSOCUG00000006230	UPF2	95	98.786	ENSMLEG00000036120	UPF2	99	98.786	Mandrillus_leucophaeus
ENSOCUG00000006230	UPF2	100	79.891	ENSMAMG00000018276	UPF2	99	81.415	Mastacembelus_armatus
ENSOCUG00000006230	UPF2	100	80.856	ENSMZEG00005021595	UPF2	99	81.712	Maylandia_zebra
ENSOCUG00000006230	UPF2	99	92.241	ENSMGAG00000004573	UPF2	99	91.771	Meleagris_gallopavo
ENSOCUG00000006230	UPF2	100	94.749	ENSMAUG00000016512	Upf2	99	94.749	Mesocricetus_auratus
ENSOCUG00000006230	UPF2	95	98.469	ENSMICG00000001716	UPF2	99	98.446	Microcebus_murinus
ENSOCUG00000006230	UPF2	100	96.314	ENSMOCG00000008263	Upf2	99	96.314	Microtus_ochrogaster
ENSOCUG00000006230	UPF2	90	83.377	ENSMMOG00000006528	UPF2	100	79.170	Mola_mola
ENSOCUG00000006230	UPF2	100	94.749	ENSMODG00000016794	UPF2	99	94.279	Monodelphis_domestica
ENSOCUG00000006230	UPF2	100	81.153	ENSMALG00000002663	UPF2	100	81.357	Monopterus_albus
ENSOCUG00000006230	UPF2	100	96.552	MGP_CAROLIEiJ_G0023157	Upf2	99	97.988	Mus_caroli
ENSOCUG00000006230	UPF2	100	96.552	ENSMUSG00000043241	Upf2	99	96.941	Mus_musculus
ENSOCUG00000006230	UPF2	100	95.455	MGP_PahariEiJ_G0019217	Upf2	99	96.558	Mus_pahari
ENSOCUG00000006230	UPF2	100	96.787	MGP_SPRETEiJ_G0024075	Upf2	99	96.941	Mus_spretus
ENSOCUG00000006230	UPF2	100	97.414	ENSMPUG00000001064	UPF2	99	97.414	Mustela_putorius_furo
ENSOCUG00000006230	UPF2	100	96.562	ENSMLUG00000000228	UPF2	100	96.562	Myotis_lucifugus
ENSOCUG00000006230	UPF2	100	80.856	ENSNBRG00000013629	UPF2	99	81.712	Neolamprologus_brichardi
ENSOCUG00000006230	UPF2	100	96.946	ENSNLEG00000012058	UPF2	99	96.946	Nomascus_leucogenys
ENSOCUG00000006230	UPF2	56	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSOCUG00000006230	UPF2	81	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSOCUG00000006230	UPF2	100	96.549	ENSODEG00000001290	UPF2	99	96.549	Octodon_degus
ENSOCUG00000006230	UPF2	100	80.934	ENSONIG00000017991	UPF2	99	81.790	Oreochromis_niloticus
ENSOCUG00000006230	UPF2	100	80.465	ENSORLG00000017189	UPF2	99	79.767	Oryzias_latipes
ENSOCUG00000006230	UPF2	100	80.388	ENSORLG00020005969	UPF2	99	79.767	Oryzias_latipes_hni
ENSOCUG00000006230	UPF2	100	80.388	ENSORLG00015005713	UPF2	99	79.767	Oryzias_latipes_hsok
ENSOCUG00000006230	UPF2	100	77.580	ENSOMEG00000023420	UPF2	98	76.713	Oryzias_melastigma
ENSOCUG00000006230	UPF2	100	97.022	ENSOGAG00000005796	UPF2	99	97.022	Otolemur_garnettii
ENSOCUG00000006230	UPF2	100	97.261	ENSOARG00000014587	UPF2	99	97.261	Ovis_aries
ENSOCUG00000006230	UPF2	100	92.613	ENSPPAG00000037953	UPF2	100	93.031	Pan_paniscus
ENSOCUG00000006230	UPF2	100	97.414	ENSPPRG00000000690	UPF2	99	97.414	Panthera_pardus
ENSOCUG00000006230	UPF2	100	97.414	ENSPTIG00000008867	UPF2	99	97.414	Panthera_tigris_altaica
ENSOCUG00000006230	UPF2	100	96.946	ENSPTRG00000002291	UPF2	99	96.946	Pan_troglodytes
ENSOCUG00000006230	UPF2	100	97.103	ENSPANG00000023399	UPF2	99	97.103	Papio_anubis
ENSOCUG00000006230	UPF2	100	80.808	ENSPKIG00000025502	UPF2	99	80.109	Paramormyrops_kingsleyae
ENSOCUG00000006230	UPF2	59	90.263	ENSPSIG00000015158	UPF2	95	90.789	Pelodiscus_sinensis
ENSOCUG00000006230	UPF2	100	79.499	ENSPMGG00000005259	UPF2	100	79.890	Periophthalmus_magnuspinnatus
ENSOCUG00000006230	UPF2	93	92.000	ENSPEMG00000015731	Upf2	99	90.000	Peromyscus_maniculatus_bairdii
ENSOCUG00000006230	UPF2	100	94.563	ENSPCIG00000006656	UPF2	100	93.966	Phascolarctos_cinereus
ENSOCUG00000006230	UPF2	92	84.877	ENSPFOG00000017118	UPF2	99	79.689	Poecilia_formosa
ENSOCUG00000006230	UPF2	100	79.844	ENSPLAG00000005094	UPF2	99	79.689	Poecilia_latipinna
ENSOCUG00000006230	UPF2	92	84.877	ENSPMEG00000017009	UPF2	99	79.689	Poecilia_mexicana
ENSOCUG00000006230	UPF2	100	79.719	ENSPREG00000021880	UPF2	100	79.875	Poecilia_reticulata
ENSOCUG00000006230	UPF2	66	98.921	ENSPPYG00000002089	-	99	98.921	Pongo_abelii
ENSOCUG00000006230	UPF2	90	87.856	ENSPCAG00000000684	UPF2	95	87.856	Procavia_capensis
ENSOCUG00000006230	UPF2	100	94.122	ENSPCOG00000021656	UPF2	100	94.279	Propithecus_coquereli
ENSOCUG00000006230	UPF2	100	89.115	ENSPVAG00000017286	UPF2	99	88.567	Pteropus_vampyrus
ENSOCUG00000006230	UPF2	100	78.444	ENSPNYG00000017096	UPF2	100	79.300	Pundamilia_nyererei
ENSOCUG00000006230	UPF2	100	82.362	ENSPNAG00000009357	UPF2	99	82.051	Pygocentrus_nattereri
ENSOCUG00000006230	UPF2	100	90.164	ENSRNOG00000023593	Upf2	98	100.000	Rattus_norvegicus
ENSOCUG00000006230	UPF2	100	96.082	ENSRBIG00000037780	UPF2	100	96.082	Rhinopithecus_bieti
ENSOCUG00000006230	UPF2	100	97.024	ENSRROG00000043547	UPF2	99	97.024	Rhinopithecus_roxellana
ENSOCUG00000006230	UPF2	100	96.865	ENSSBOG00000020012	UPF2	99	96.865	Saimiri_boliviensis_boliviensis
ENSOCUG00000006230	UPF2	100	82.931	ENSSFOG00015023788	upf2	100	80.997	Scleropages_formosus
ENSOCUG00000006230	UPF2	90	83.435	ENSSMAG00000007637	UPF2	100	78.837	Scophthalmus_maximus
ENSOCUG00000006230	UPF2	100	80.700	ENSSDUG00000017244	UPF2	99	81.868	Seriola_dumerili
ENSOCUG00000006230	UPF2	100	78.861	ENSSLDG00000016866	UPF2	100	80.109	Seriola_lalandi_dorsalis
ENSOCUG00000006230	UPF2	100	93.652	ENSSARG00000008615	UPF2	99	94.201	Sorex_araneus
ENSOCUG00000006230	UPF2	100	89.107	ENSSPUG00000014544	UPF2	99	89.362	Sphenodon_punctatus
ENSOCUG00000006230	UPF2	68	98.385	ENSSSCG00000011117	-	99	98.385	Sus_scrofa
ENSOCUG00000006230	UPF2	99	92.666	ENSTGUG00000002163	-	100	92.627	Taeniopygia_guttata
ENSOCUG00000006230	UPF2	100	80.109	ENSTRUG00000007519	UPF2	99	81.012	Takifugu_rubripes
ENSOCUG00000006230	UPF2	100	79.829	ENSTNIG00000004453	UPF2	99	79.485	Tetraodon_nigroviridis
ENSOCUG00000006230	UPF2	93	88.973	ENSTBEG00000012679	UPF2	93	89.057	Tupaia_belangeri
ENSOCUG00000006230	UPF2	100	97.176	ENSTTRG00000016388	UPF2	99	97.176	Tursiops_truncatus
ENSOCUG00000006230	UPF2	95	98.611	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSOCUG00000006230	UPF2	100	97.571	ENSUMAG00000012953	UPF2	95	97.571	Ursus_maritimus
ENSOCUG00000006230	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSOCUG00000006230	UPF2	100	97.492	ENSVVUG00000006166	UPF2	99	97.492	Vulpes_vulpes
ENSOCUG00000006230	UPF2	100	84.694	ENSXETG00000033103	UPF2	99	84.053	Xenopus_tropicalis
ENSOCUG00000006230	UPF2	92	84.478	ENSXCOG00000011604	UPF2	100	79.533	Xiphophorus_couchianus
ENSOCUG00000006230	UPF2	92	84.707	ENSXMAG00000017209	UPF2	99	79.455	Xiphophorus_maculatus