EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000007633 (Gene tree)
Gene ID: 100337770
Gene Symbol: SF3A1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 18562 bases
Position: chrGL018723:3484319-3502880
Accession: 100337770
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000006603	PRP21_like_P	PF12230.8	6.2e-52	1	1
ENSOCUP00000006603	Surp	PF01805.20	4.7e-46	1	2
ENSOCUP00000006603	Surp	PF01805.20	4.7e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000007634	SF3A1-201	2379	XM_017350684	ENSOCUP00000006603	793 (aa)	XP_002721215	G1STH0

Gene Model

Click here to download ENSOCUG00000007633's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000007633's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000007633	SF3A1	100	98.487	ENSG00000099995	SF3A1	100	98.487	Homo_sapiens
ENSOCUG00000007633	SF3A1	100	83.522	ENSAPOG00000020465	sf3a1	97	86.144	Acanthochromis_polyacanthus
ENSOCUG00000007633	SF3A1	100	98.742	ENSAMEG00000007737	SF3A1	100	98.742	Ailuropoda_melanoleuca
ENSOCUG00000007633	SF3A1	100	84.277	ENSACIG00000020672	sf3a1	98	85.807	Amphilophus_citrinellus
ENSOCUG00000007633	SF3A1	100	83.125	ENSAOCG00000003060	sf3a1	97	86.144	Amphiprion_ocellaris
ENSOCUG00000007633	SF3A1	100	83.250	ENSAPEG00000010735	sf3a1	97	86.275	Amphiprion_percula
ENSOCUG00000007633	SF3A1	96	85.938	ENSATEG00000021201	sf3a1	98	85.548	Anabas_testudineus
ENSOCUG00000007633	SF3A1	95	94.055	ENSAPLG00000009057	SF3A1	99	93.273	Anas_platyrhynchos
ENSOCUG00000007633	SF3A1	100	85.714	ENSACAG00000009415	SF3A1	100	87.069	Anolis_carolinensis
ENSOCUG00000007633	SF3A1	100	98.865	ENSANAG00000032045	SF3A1	100	98.865	Aotus_nancymaae
ENSOCUG00000007633	SF3A1	100	84.383	ENSACLG00000012622	sf3a1	98	86.180	Astatotilapia_calliptera
ENSOCUG00000007633	SF3A1	99	83.376	ENSAMXG00000005382	sf3a1	99	84.299	Astyanax_mexicanus
ENSOCUG00000007633	SF3A1	100	98.991	ENSBTAG00000003390	SF3A1	100	98.991	Bos_taurus
ENSOCUG00000007633	SF3A1	84	43.627	WBGene00004188	prp-21	94	43.682	Caenorhabditis_elegans
ENSOCUG00000007633	SF3A1	100	98.739	ENSCJAG00000010370	SF3A1	100	98.739	Callithrix_jacchus
ENSOCUG00000007633	SF3A1	100	98.991	ENSCAFG00000012559	SF3A1	100	98.991	Canis_familiaris
ENSOCUG00000007633	SF3A1	100	98.991	ENSCAFG00020000838	SF3A1	100	98.991	Canis_lupus_dingo
ENSOCUG00000007633	SF3A1	100	98.865	ENSCHIG00000018642	SF3A1	100	98.865	Capra_hircus
ENSOCUG00000007633	SF3A1	100	99.369	ENSTSYG00000004739	SF3A1	100	99.369	Carlito_syrichta
ENSOCUG00000007633	SF3A1	94	81.308	ENSCAPG00000015414	SF3A1	98	81.308	Cavia_aperea
ENSOCUG00000007633	SF3A1	100	98.739	ENSCPOG00000014589	SF3A1	100	98.739	Cavia_porcellus
ENSOCUG00000007633	SF3A1	100	98.865	ENSCCAG00000032006	SF3A1	100	98.865	Cebus_capucinus
ENSOCUG00000007633	SF3A1	100	98.739	ENSCATG00000029241	SF3A1	100	98.739	Cercocebus_atys
ENSOCUG00000007633	SF3A1	100	98.361	ENSCLAG00000006508	SF3A1	100	98.361	Chinchilla_lanigera
ENSOCUG00000007633	SF3A1	100	98.613	ENSCSAG00000009470	SF3A1	100	98.613	Chlorocebus_sabaeus
ENSOCUG00000007633	SF3A1	61	98.524	ENSCHOG00000005201	SF3A1	69	98.524	Choloepus_hoffmanni
ENSOCUG00000007633	SF3A1	100	90.806	ENSCPBG00000007595	SF3A1	100	90.932	Chrysemys_picta_bellii
ENSOCUG00000007633	SF3A1	97	52.369	ENSCING00000008526	-	67	57.925	Ciona_intestinalis
ENSOCUG00000007633	SF3A1	96	51.484	ENSCSAVG00000005608	-	92	61.864	Ciona_savignyi
ENSOCUG00000007633	SF3A1	100	98.613	ENSCANG00000033564	SF3A1	100	98.613	Colobus_angolensis_palliatus
ENSOCUG00000007633	SF3A1	100	98.235	ENSCGRG00001008933	Sf3a1	100	98.235	Cricetulus_griseus_chok1gshd
ENSOCUG00000007633	SF3A1	100	98.235	ENSCGRG00000006127	Sf3a1	100	98.235	Cricetulus_griseus_crigri
ENSOCUG00000007633	SF3A1	99	81.853	ENSCSEG00000010792	sf3a1	98	82.750	Cynoglossus_semilaevis
ENSOCUG00000007633	SF3A1	100	83.145	ENSCVAG00000004560	sf3a1	98	84.245	Cyprinodon_variegatus
ENSOCUG00000007633	SF3A1	100	82.538	ENSDARG00000041887	sf3a1	97	84.615	Danio_rerio
ENSOCUG00000007633	SF3A1	100	98.742	ENSDNOG00000010629	SF3A1	100	98.742	Dasypus_novemcinctus
ENSOCUG00000007633	SF3A1	100	98.991	ENSDORG00000005613	Sf3a1	100	98.991	Dipodomys_ordii
ENSOCUG00000007633	SF3A1	79	61.495	FBgn0266917	Sf3a1	85	59.386	Drosophila_melanogaster
ENSOCUG00000007633	SF3A1	89	96.011	ENSETEG00000017194	SF3A1	100	96.011	Echinops_telfairi
ENSOCUG00000007633	SF3A1	100	65.059	ENSEBUG00000001285	sf3a1	96	67.244	Eptatretus_burgeri
ENSOCUG00000007633	SF3A1	100	99.117	ENSEASG00005010254	SF3A1	100	99.117	Equus_asinus_asinus
ENSOCUG00000007633	SF3A1	100	99.117	ENSECAG00000023962	SF3A1	100	99.117	Equus_caballus
ENSOCUG00000007633	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSOCUG00000007633	SF3A1	100	82.080	ENSELUG00000022578	sf3a1	97	83.333	Esox_lucius
ENSOCUG00000007633	SF3A1	100	98.739	ENSFCAG00000011932	SF3A1	100	98.739	Felis_catus
ENSOCUG00000007633	SF3A1	95	93.122	ENSFALG00000006944	SF3A1	100	91.688	Ficedula_albicollis
ENSOCUG00000007633	SF3A1	100	98.739	ENSFDAG00000009560	SF3A1	100	98.739	Fukomys_damarensis
ENSOCUG00000007633	SF3A1	100	83.899	ENSFHEG00000010866	sf3a1	98	84.715	Fundulus_heteroclitus
ENSOCUG00000007633	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	97	81.323	Gadus_morhua
ENSOCUG00000007633	SF3A1	95	94.048	ENSGALG00000007937	SF3A1	100	92.191	Gallus_gallus
ENSOCUG00000007633	SF3A1	100	83.145	ENSGAFG00000009111	sf3a1	97	84.837	Gambusia_affinis
ENSOCUG00000007633	SF3A1	100	81.864	ENSGACG00000011893	sf3a1	97	83.246	Gasterosteus_aculeatus
ENSOCUG00000007633	SF3A1	96	91.064	ENSGAGG00000000762	SF3A1	99	91.196	Gopherus_agassizii
ENSOCUG00000007633	SF3A1	100	98.487	ENSGGOG00000012631	SF3A1	100	98.487	Gorilla_gorilla
ENSOCUG00000007633	SF3A1	100	84.383	ENSHBUG00000015795	sf3a1	98	86.180	Haplochromis_burtoni
ENSOCUG00000007633	SF3A1	100	98.865	ENSHGLG00000007907	SF3A1	100	98.865	Heterocephalus_glaber_female
ENSOCUG00000007633	SF3A1	100	98.865	ENSHGLG00100013799	SF3A1	100	98.865	Heterocephalus_glaber_male
ENSOCUG00000007633	SF3A1	100	80.252	ENSHCOG00000015423	sf3a1	99	80.645	Hippocampus_comes
ENSOCUG00000007633	SF3A1	96	82.422	ENSIPUG00000002470	sf3a1	98	82.682	Ictalurus_punctatus
ENSOCUG00000007633	SF3A1	100	98.865	ENSSTOG00000013892	SF3A1	100	98.865	Ictidomys_tridecemlineatus
ENSOCUG00000007633	SF3A1	100	98.992	ENSJJAG00000022566	Sf3a1	100	98.992	Jaculus_jaculus
ENSOCUG00000007633	SF3A1	100	82.767	ENSKMAG00000002400	sf3a1	98	84.067	Kryptolebias_marmoratus
ENSOCUG00000007633	SF3A1	100	82.516	ENSLBEG00000022974	sf3a1	97	84.052	Labrus_bergylta
ENSOCUG00000007633	SF3A1	100	86.951	ENSLACG00000003565	SF3A1	97	88.151	Latimeria_chalumnae
ENSOCUG00000007633	SF3A1	100	84.962	ENSLOCG00000008251	sf3a1	97	86.753	Lepisosteus_oculatus
ENSOCUG00000007633	SF3A1	100	98.613	ENSLAFG00000000448	SF3A1	100	98.613	Loxodonta_africana
ENSOCUG00000007633	SF3A1	98	62.038	ENSLAFG00000026032	-	97	62.596	Loxodonta_africana
ENSOCUG00000007633	SF3A1	100	98.487	ENSMFAG00000031979	SF3A1	100	98.487	Macaca_fascicularis
ENSOCUG00000007633	SF3A1	100	98.487	ENSMMUG00000005547	SF3A1	100	98.487	Macaca_mulatta
ENSOCUG00000007633	SF3A1	100	98.361	ENSMNEG00000037229	SF3A1	100	98.361	Macaca_nemestrina
ENSOCUG00000007633	SF3A1	100	98.613	ENSMLEG00000041908	SF3A1	100	98.613	Mandrillus_leucophaeus
ENSOCUG00000007633	SF3A1	97	85.881	ENSMAMG00000006460	sf3a1	97	86.010	Mastacembelus_armatus
ENSOCUG00000007633	SF3A1	100	84.383	ENSMZEG00005009633	sf3a1	98	86.180	Maylandia_zebra
ENSOCUG00000007633	SF3A1	95	94.048	ENSMGAG00000001330	SF3A1	99	93.264	Meleagris_gallopavo
ENSOCUG00000007633	SF3A1	92	95.082	ENSMAUG00000020317	Sf3a1	94	95.082	Mesocricetus_auratus
ENSOCUG00000007633	SF3A1	100	98.739	ENSMICG00000010038	SF3A1	100	98.739	Microcebus_murinus
ENSOCUG00000007633	SF3A1	100	98.361	ENSMOCG00000008438	Sf3a1	100	98.361	Microtus_ochrogaster
ENSOCUG00000007633	SF3A1	100	81.258	ENSMMOG00000015588	sf3a1	97	82.422	Mola_mola
ENSOCUG00000007633	SF3A1	100	97.604	ENSMODG00000009270	SF3A1	100	97.604	Monodelphis_domestica
ENSOCUG00000007633	SF3A1	100	84.257	ENSMALG00000000148	sf3a1	99	85.831	Monopterus_albus
ENSOCUG00000007633	SF3A1	100	97.856	MGP_CAROLIEiJ_G0016029	Sf3a1	100	97.856	Mus_caroli
ENSOCUG00000007633	SF3A1	100	97.856	ENSMUSG00000002129	Sf3a1	100	97.856	Mus_musculus
ENSOCUG00000007633	SF3A1	100	97.730	MGP_PahariEiJ_G0016862	Sf3a1	100	97.730	Mus_pahari
ENSOCUG00000007633	SF3A1	100	97.856	MGP_SPRETEiJ_G0016870	Sf3a1	100	97.856	Mus_spretus
ENSOCUG00000007633	SF3A1	100	98.991	ENSMPUG00000013144	SF3A1	100	98.991	Mustela_putorius_furo
ENSOCUG00000007633	SF3A1	100	99.117	ENSMLUG00000002139	SF3A1	100	99.117	Myotis_lucifugus
ENSOCUG00000007633	SF3A1	100	98.613	ENSNGAG00000016977	Sf3a1	100	98.613	Nannospalax_galili
ENSOCUG00000007633	SF3A1	100	83.645	ENSNBRG00000016642	sf3a1	96	86.825	Neolamprologus_brichardi
ENSOCUG00000007633	SF3A1	100	98.613	ENSNLEG00000003686	SF3A1	100	98.613	Nomascus_leucogenys
ENSOCUG00000007633	SF3A1	96	87.895	ENSMEUG00000008741	SF3A1	100	87.895	Notamacropus_eugenii
ENSOCUG00000007633	SF3A1	100	98.991	ENSOPRG00000016636	SF3A1	100	98.991	Ochotona_princeps
ENSOCUG00000007633	SF3A1	100	98.613	ENSODEG00000002571	SF3A1	100	98.613	Octodon_degus
ENSOCUG00000007633	SF3A1	100	84.277	ENSONIG00000010848	sf3a1	98	85.547	Oreochromis_niloticus
ENSOCUG00000007633	SF3A1	96	81.759	ENSORLG00000013050	sf3a1	98	83.558	Oryzias_latipes
ENSOCUG00000007633	SF3A1	99	80.253	ENSORLG00020003236	sf3a1	94	83.693	Oryzias_latipes_hni
ENSOCUG00000007633	SF3A1	100	82.516	ENSORLG00015017411	sf3a1	99	83.742	Oryzias_latipes_hsok
ENSOCUG00000007633	SF3A1	100	82.642	ENSOMEG00000013362	sf3a1	99	83.484	Oryzias_melastigma
ENSOCUG00000007633	SF3A1	100	99.117	ENSOGAG00000012931	SF3A1	100	99.117	Otolemur_garnettii
ENSOCUG00000007633	SF3A1	100	97.100	ENSOARG00000006849	SF3A1	100	97.100	Ovis_aries
ENSOCUG00000007633	SF3A1	100	97.478	ENSPPAG00000041790	SF3A1	100	97.478	Pan_paniscus
ENSOCUG00000007633	SF3A1	100	98.739	ENSPPRG00000004391	SF3A1	100	98.739	Panthera_pardus
ENSOCUG00000007633	SF3A1	97	98.964	ENSPTIG00000000844	SF3A1	100	98.964	Panthera_tigris_altaica
ENSOCUG00000007633	SF3A1	100	98.487	ENSPTRG00000014240	SF3A1	100	98.487	Pan_troglodytes
ENSOCUG00000007633	SF3A1	100	98.613	ENSPANG00000020772	SF3A1	100	98.613	Papio_anubis
ENSOCUG00000007633	SF3A1	83	93.407	ENSPSIG00000012803	SF3A1	96	94.518	Pelodiscus_sinensis
ENSOCUG00000007633	SF3A1	96	84.031	ENSPMGG00000023096	sf3a1	100	84.031	Periophthalmus_magnuspinnatus
ENSOCUG00000007633	SF3A1	100	98.487	ENSPEMG00000009494	Sf3a1	100	98.487	Peromyscus_maniculatus_bairdii
ENSOCUG00000007633	SF3A1	69	77.677	ENSPMAG00000007139	-	89	79.245	Petromyzon_marinus
ENSOCUG00000007633	SF3A1	100	97.604	ENSPCIG00000022692	SF3A1	100	97.604	Phascolarctos_cinereus
ENSOCUG00000007633	SF3A1	100	75.251	ENSPFOG00000016768	sf3a1	93	78.912	Poecilia_formosa
ENSOCUG00000007633	SF3A1	100	83.648	ENSPLAG00000017268	sf3a1	97	85.098	Poecilia_latipinna
ENSOCUG00000007633	SF3A1	84	85.994	ENSPMEG00000019811	sf3a1	98	85.241	Poecilia_mexicana
ENSOCUG00000007633	SF3A1	100	83.774	ENSPREG00000010347	sf3a1	97	85.490	Poecilia_reticulata
ENSOCUG00000007633	SF3A1	100	98.613	ENSPPYG00000011707	SF3A1	100	98.613	Pongo_abelii
ENSOCUG00000007633	SF3A1	57	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSOCUG00000007633	SF3A1	100	98.739	ENSPCOG00000026630	SF3A1	100	98.739	Propithecus_coquereli
ENSOCUG00000007633	SF3A1	100	94.704	ENSPVAG00000017719	SF3A1	94	98.389	Pteropus_vampyrus
ENSOCUG00000007633	SF3A1	100	84.383	ENSPNYG00000018706	sf3a1	98	86.180	Pundamilia_nyererei
ENSOCUG00000007633	SF3A1	99	82.846	ENSPNAG00000003721	sf3a1	99	84.407	Pygocentrus_nattereri
ENSOCUG00000007633	SF3A1	100	98.108	ENSRNOG00000005218	Sf3a1	100	98.108	Rattus_norvegicus
ENSOCUG00000007633	SF3A1	100	98.487	ENSRBIG00000032167	SF3A1	100	98.487	Rhinopithecus_bieti
ENSOCUG00000007633	SF3A1	100	98.487	ENSRROG00000044908	SF3A1	100	98.487	Rhinopithecus_roxellana
ENSOCUG00000007633	SF3A1	92	99.181	ENSSBOG00000021960	SF3A1	100	99.409	Saimiri_boliviensis_boliviensis
ENSOCUG00000007633	SF3A1	97	95.084	ENSSHAG00000003666	SF3A1	98	95.213	Sarcophilus_harrisii
ENSOCUG00000007633	SF3A1	100	83.500	ENSSFOG00015004579	sf3a1	99	85.256	Scleropages_formosus
ENSOCUG00000007633	SF3A1	100	81.384	ENSSMAG00000004275	sf3a1	97	82.876	Scophthalmus_maximus
ENSOCUG00000007633	SF3A1	100	83.899	ENSSDUG00000022219	sf3a1	97	85.621	Seriola_dumerili
ENSOCUG00000007633	SF3A1	100	83.899	ENSSLDG00000012642	sf3a1	97	85.621	Seriola_lalandi_dorsalis
ENSOCUG00000007633	SF3A1	97	95.725	ENSSARG00000005960	SF3A1	100	95.725	Sorex_araneus
ENSOCUG00000007633	SF3A1	96	91.839	ENSSPUG00000018863	SF3A1	98	92.219	Sphenodon_punctatus
ENSOCUG00000007633	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	97	86.144	Stegastes_partitus
ENSOCUG00000007633	SF3A1	100	98.865	ENSSSCG00000010002	SF3A1	100	98.865	Sus_scrofa
ENSOCUG00000007633	SF3A1	95	93.931	ENSTGUG00000010547	SF3A1	100	93.282	Taeniopygia_guttata
ENSOCUG00000007633	SF3A1	100	81.006	ENSTRUG00000006118	sf3a1	98	81.242	Takifugu_rubripes
ENSOCUG00000007633	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	84.821	Tetraodon_nigroviridis
ENSOCUG00000007633	SF3A1	100	91.299	ENSTBEG00000012771	SF3A1	100	91.299	Tupaia_belangeri
ENSOCUG00000007633	SF3A1	100	98.866	ENSTTRG00000001535	SF3A1	100	98.866	Tursiops_truncatus
ENSOCUG00000007633	SF3A1	99	97.713	ENSUAMG00000006750	SF3A1	99	97.713	Ursus_americanus
ENSOCUG00000007633	SF3A1	99	98.214	ENSUMAG00000016665	SF3A1	99	98.214	Ursus_maritimus
ENSOCUG00000007633	SF3A1	100	98.991	ENSVVUG00000003075	SF3A1	100	98.991	Vulpes_vulpes
ENSOCUG00000007633	SF3A1	100	85.947	ENSXETG00000016144	sf3a1	96	87.337	Xenopus_tropicalis
ENSOCUG00000007633	SF3A1	100	82.893	ENSXCOG00000015653	sf3a1	97	84.575	Xiphophorus_couchianus
ENSOCUG00000007633	SF3A1	100	83.019	ENSXMAG00000002753	sf3a1	97	84.706	Xiphophorus_maculatus