EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000008438 (Gene tree)
Gene ID: 100342974
Gene Symbol: SRRM1
Alias: -
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 27659 bases
Position: chr13:128802117-128829775
Accession: 100342974
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000007294	PWI	PF01480.17	4.6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000008440	SRRM1-201	2742	XM_002715973	ENSOCUP00000007294	914 (aa)	XP_002716019	G1SV63

Gene Model

Click here to download ENSOCUG00000008438's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03013	RNA transport	KEGG
ocu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000008438's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000008438	SRRM1	100	97.162	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSOCUG00000008438	SRRM1	100	97.162	ENSAMEG00000010075	SRRM1	100	97.162	Ailuropoda_melanoleuca
ENSOCUG00000008438	SRRM1	100	96.091	ENSANAG00000035606	SRRM1	100	96.091	Aotus_nancymaae
ENSOCUG00000008438	SRRM1	100	96.409	ENSBTAG00000013772	SRRM1	100	96.409	Bos_taurus
ENSOCUG00000008438	SRRM1	100	96.507	ENSCJAG00000020822	SRRM1	100	96.507	Callithrix_jacchus
ENSOCUG00000008438	SRRM1	100	94.788	ENSCAFG00020020948	SRRM1	99	95.823	Canis_lupus_dingo
ENSOCUG00000008438	SRRM1	100	96.725	ENSTSYG00000006782	SRRM1	100	96.725	Carlito_syrichta
ENSOCUG00000008438	SRRM1	99	93.969	ENSCAPG00000011473	SRRM1	100	93.969	Cavia_aperea
ENSOCUG00000008438	SRRM1	100	96.397	ENSCCAG00000029474	SRRM1	100	96.397	Cebus_capucinus
ENSOCUG00000008438	SRRM1	59	95.387	ENSCATG00000031303	SRRM1	100	96.417	Cercocebus_atys
ENSOCUG00000008438	SRRM1	72	98.028	ENSCHOG00000000027	SRRM1	62	98.028	Choloepus_hoffmanni
ENSOCUG00000008438	SRRM1	100	96.834	ENSFCAG00000000678	-	100	96.834	Felis_catus
ENSOCUG00000008438	SRRM1	100	96.300	ENSFDAG00000009903	SRRM1	100	96.300	Fukomys_damarensis
ENSOCUG00000008438	SRRM1	100	97.162	ENSGGOG00000005209	SRRM1	100	97.162	Gorilla_gorilla
ENSOCUG00000008438	SRRM1	100	96.083	ENSHGLG00000017105	SRRM1	100	96.083	Heterocephalus_glaber_female
ENSOCUG00000008438	SRRM1	99	94.098	ENSHGLG00100016772	SRRM1	99	94.098	Heterocephalus_glaber_male
ENSOCUG00000008438	SRRM1	100	96.526	ENSSTOG00000014640	SRRM1	100	96.526	Ictidomys_tridecemlineatus
ENSOCUG00000008438	SRRM1	100	93.432	ENSLAFG00000013830	SRRM1	100	93.432	Loxodonta_africana
ENSOCUG00000008438	SRRM1	59	95.572	ENSMNEG00000039415	SRRM1	100	96.526	Macaca_nemestrina
ENSOCUG00000008438	SRRM1	59	83.670	ENSMLEG00000038030	-	100	89.847	Mandrillus_leucophaeus
ENSOCUG00000008438	SRRM1	100	96.417	ENSMICG00000006553	SRRM1	100	96.417	Microcebus_murinus
ENSOCUG00000008438	SRRM1	100	97.162	ENSNLEG00000008966	SRRM1	100	97.162	Nomascus_leucogenys
ENSOCUG00000008438	SRRM1	55	88.685	ENSMEUG00000014704	SRRM1	50	90.780	Notamacropus_eugenii
ENSOCUG00000008438	SRRM1	59	94.649	ENSOGAG00000010210	SRRM1	59	93.173	Otolemur_garnettii
ENSOCUG00000008438	SRRM1	92	96.927	ENSOARG00000006453	SRRM1	99	96.927	Ovis_aries
ENSOCUG00000008438	SRRM1	100	97.052	ENSPPAG00000043918	SRRM1	100	97.052	Pan_paniscus
ENSOCUG00000008438	SRRM1	100	96.834	ENSPPRG00000002509	SRRM1	100	96.834	Panthera_pardus
ENSOCUG00000008438	SRRM1	100	96.634	ENSPTRG00000000349	SRRM1	100	96.634	Pan_troglodytes
ENSOCUG00000008438	SRRM1	59	93.358	ENSPANG00000010194	SRRM1	100	95.223	Papio_anubis
ENSOCUG00000008438	SRRM1	100	96.838	ENSPPYG00000001716	SRRM1	100	96.838	Pongo_abelii
ENSOCUG00000008438	SRRM1	100	96.838	ENSPCOG00000021311	SRRM1	100	96.838	Propithecus_coquereli
ENSOCUG00000008438	SRRM1	100	96.834	ENSPVAG00000005836	SRRM1	100	96.834	Pteropus_vampyrus
ENSOCUG00000008438	SRRM1	100	95.524	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSOCUG00000008438	SRRM1	61	90.909	ENSSARG00000013718	SRRM1	50	92.344	Sorex_araneus
ENSOCUG00000008438	SRRM1	60	74.132	ENSSPUG00000015890	SRRM1	57	78.821	Sphenodon_punctatus
ENSOCUG00000008438	SRRM1	99	96.280	ENSSSCG00000032947	SRRM1	100	96.145	Sus_scrofa
ENSOCUG00000008438	SRRM1	100	96.937	ENSTBEG00000000100	SRRM1	100	96.937	Tupaia_belangeri
ENSOCUG00000008438	SRRM1	99	95.820	ENSTTRG00000009365	SRRM1	100	95.820	Tursiops_truncatus
ENSOCUG00000008438	SRRM1	88	95.684	ENSUMAG00000013121	SRRM1	95	95.684	Ursus_maritimus
ENSOCUG00000008438	SRRM1	100	88.865	ENSVVUG00000026966	SRRM1	100	88.865	Vulpes_vulpes