EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000008450 (Gene tree)
Gene ID: -
Gene Symbol: UPF3A
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 16160 bases
Position: chrGL019013:197179-213338
Accession: 20332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000007304	Smg4_UPF3	PF03467.15	2.9e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000008454	UPF3A-201	1383	-	ENSOCUP00000007304	460 (aa)	-	G1SV73

Gene Model

Click here to download ENSOCUG00000008450's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000008450's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000008450	UPF3A	99	60.082	ENSG00000169062	UPF3A	98	60.082	Homo_sapiens
ENSOCUG00000008450	UPF3A	93	61.099	ENSAMEG00000004259	UPF3A	92	62.768	Ailuropoda_melanoleuca
ENSOCUG00000008450	UPF3A	88	48.832	ENSATEG00000005843	upf3a	80	51.872	Anabas_testudineus
ENSOCUG00000008450	UPF3A	84	55.952	ENSACAG00000001540	UPF3A	100	55.952	Anolis_carolinensis
ENSOCUG00000008450	UPF3A	82	37.260	ENSANAG00000025598	-	85	40.995	Aotus_nancymaae
ENSOCUG00000008450	UPF3A	99	58.848	ENSANAG00000021713	UPF3A	98	58.848	Aotus_nancymaae
ENSOCUG00000008450	UPF3A	57	30.627	WBGene00004882	smg-4	52	31.818	Caenorhabditis_elegans
ENSOCUG00000008450	UPF3A	94	59.871	ENSCJAG00000019102	UPF3A	98	58.642	Callithrix_jacchus
ENSOCUG00000008450	UPF3A	94	58.105	ENSCAFG00000006504	UPF3A	97	58.298	Canis_familiaris
ENSOCUG00000008450	UPF3A	96	58.471	ENSCAFG00020014268	UPF3A	85	61.687	Canis_lupus_dingo
ENSOCUG00000008450	UPF3A	93	59.560	ENSCHIG00000008682	UPF3A	91	57.557	Capra_hircus
ENSOCUG00000008450	UPF3A	51	45.230	ENSTSYG00000014690	UPF3B	73	58.788	Carlito_syrichta
ENSOCUG00000008450	UPF3A	76	57.373	ENSTSYG00000001918	UPF3A	100	57.373	Carlito_syrichta
ENSOCUG00000008450	UPF3A	78	57.289	ENSCPOG00000006824	UPF3A	88	57.143	Cavia_porcellus
ENSOCUG00000008450	UPF3A	99	58.848	ENSCCAG00000018406	UPF3A	98	58.848	Cebus_capucinus
ENSOCUG00000008450	UPF3A	99	61.603	ENSCATG00000029733	UPF3A	98	61.603	Cercocebus_atys
ENSOCUG00000008450	UPF3A	99	60.714	ENSCSAG00000017388	UPF3A	98	60.714	Chlorocebus_sabaeus
ENSOCUG00000008450	UPF3A	55	73.043	ENSCHOG00000006918	-	51	73.043	Choloepus_hoffmanni
ENSOCUG00000008450	UPF3A	79	61.979	ENSCGRG00001017387	Upf3a	88	61.198	Cricetulus_griseus_chok1gshd
ENSOCUG00000008450	UPF3A	79	61.979	ENSCGRG00000001468	Upf3a	88	61.198	Cricetulus_griseus_crigri
ENSOCUG00000008450	UPF3A	85	47.596	ENSDARG00000069297	upf3a	82	50.802	Danio_rerio
ENSOCUG00000008450	UPF3A	82	60.391	ENSDNOG00000034391	UPF3A	91	61.220	Dasypus_novemcinctus
ENSOCUG00000008450	UPF3A	94	50.638	ENSETEG00000010110	UPF3A	98	49.796	Echinops_telfairi
ENSOCUG00000008450	UPF3A	99	62.264	ENSEASG00005021884	UPF3A	99	62.264	Equus_asinus_asinus
ENSOCUG00000008450	UPF3A	94	63.516	ENSECAG00000017141	UPF3A	99	61.845	Equus_caballus
ENSOCUG00000008450	UPF3A	84	49.176	ENSELUG00000011050	upf3a	89	50.000	Esox_lucius
ENSOCUG00000008450	UPF3A	94	59.013	ENSFCAG00000014602	UPF3A	97	57.971	Felis_catus
ENSOCUG00000008450	UPF3A	87	51.566	ENSGGOG00000043074	-	90	50.843	Gorilla_gorilla
ENSOCUG00000008450	UPF3A	99	60.981	ENSGGOG00000015428	UPF3A	98	60.981	Gorilla_gorilla
ENSOCUG00000008450	UPF3A	85	52.109	ENSGGOG00000041219	-	92	51.117	Gorilla_gorilla
ENSOCUG00000008450	UPF3A	75	60.377	ENSHGLG00000001544	UPF3A	83	59.838	Heterocephalus_glaber_female
ENSOCUG00000008450	UPF3A	75	60.377	ENSHGLG00100013244	UPF3A	83	59.838	Heterocephalus_glaber_male
ENSOCUG00000008450	UPF3A	50	51.172	ENSLBEG00000028689	upf3b	52	54.508	Labrus_bergylta
ENSOCUG00000008450	UPF3A	62	37.313	ENSLACG00000006645	UPF3A	100	36.950	Latimeria_chalumnae
ENSOCUG00000008450	UPF3A	95	47.257	ENSLOCG00000002665	upf3a	98	47.679	Lepisosteus_oculatus
ENSOCUG00000008450	UPF3A	83	54.503	ENSLAFG00000023358	UPF3A	100	54.756	Loxodonta_africana
ENSOCUG00000008450	UPF3A	99	59.660	ENSMFAG00000045016	UPF3A	98	59.355	Macaca_fascicularis
ENSOCUG00000008450	UPF3A	99	56.276	ENSMMUG00000007449	UPF3A	98	59.275	Macaca_mulatta
ENSOCUG00000008450	UPF3A	90	62.844	ENSMNEG00000036402	UPF3A	88	63.084	Macaca_nemestrina
ENSOCUG00000008450	UPF3A	87	63.549	ENSMLEG00000014726	UPF3A	97	63.549	Mandrillus_leucophaeus
ENSOCUG00000008450	UPF3A	81	54.815	ENSMGAG00000014837	UPF3A	99	54.815	Meleagris_gallopavo
ENSOCUG00000008450	UPF3A	85	59.112	ENSMODG00000003159	UPF3A	99	59.112	Monodelphis_domestica
ENSOCUG00000008450	UPF3A	77	63.415	MGP_CAROLIEiJ_G0030848	Upf3a	80	65.706	Mus_caroli
ENSOCUG00000008450	UPF3A	77	61.968	ENSMUSG00000038398	Upf3a	81	64.124	Mus_musculus
ENSOCUG00000008450	UPF3A	77	62.198	MGP_PahariEiJ_G0021311	Upf3a	81	64.205	Mus_pahari
ENSOCUG00000008450	UPF3A	77	61.702	MGP_SPRETEiJ_G0031958	Upf3a	81	63.842	Mus_spretus
ENSOCUG00000008450	UPF3A	98	59.006	ENSMPUG00000009139	UPF3A	98	59.006	Mustela_putorius_furo
ENSOCUG00000008450	UPF3A	85	63.507	ENSMLUG00000015905	UPF3A	100	63.507	Myotis_lucifugus
ENSOCUG00000008450	UPF3A	83	59.466	ENSNGAG00000019314	Upf3a	92	59.367	Nannospalax_galili
ENSOCUG00000008450	UPF3A	99	60.510	ENSNLEG00000007563	UPF3A	98	60.510	Nomascus_leucogenys
ENSOCUG00000008450	UPF3A	70	52.874	ENSOANG00000006985	-	89	52.586	Ornithorhynchus_anatinus
ENSOCUG00000008450	UPF3A	87	48.706	ENSORLG00000010911	upf3a	80	51.715	Oryzias_latipes
ENSOCUG00000008450	UPF3A	87	48.333	ENSORLG00020014317	upf3a	80	51.070	Oryzias_latipes_hni
ENSOCUG00000008450	UPF3A	70	68.824	ENSOGAG00000004788	UPF3A	75	69.906	Otolemur_garnettii
ENSOCUG00000008450	UPF3A	90	61.364	ENSOARG00000009004	UPF3A	87	61.758	Ovis_aries
ENSOCUG00000008450	UPF3A	99	59.465	ENSPPAG00000042267	UPF3A	98	59.465	Pan_paniscus
ENSOCUG00000008450	UPF3A	94	59.442	ENSPPRG00000025062	UPF3A	97	58.385	Panthera_pardus
ENSOCUG00000008450	UPF3A	85	52.709	ENSPTRG00000041835	-	92	49.386	Pan_troglodytes
ENSOCUG00000008450	UPF3A	85	54.342	ENSPTRG00000041187	-	92	54.342	Pan_troglodytes
ENSOCUG00000008450	UPF3A	85	48.804	ENSPTRG00000051640	-	92	51.790	Pan_troglodytes
ENSOCUG00000008450	UPF3A	99	59.259	ENSPTRG00000006073	UPF3A	98	59.259	Pan_troglodytes
ENSOCUG00000008450	UPF3A	99	61.392	ENSPANG00000004346	UPF3A	98	61.392	Papio_anubis
ENSOCUG00000008450	UPF3A	93	39.606	ENSPKIG00000004422	upf3a	97	47.273	Paramormyrops_kingsleyae
ENSOCUG00000008450	UPF3A	85	56.190	ENSPSIG00000007468	UPF3A	100	56.190	Pelodiscus_sinensis
ENSOCUG00000008450	UPF3A	78	62.240	ENSPEMG00000019968	-	81	64.489	Peromyscus_maniculatus_bairdii
ENSOCUG00000008450	UPF3A	85	65.625	ENSPCIG00000019590	-	87	72.512	Phascolarctos_cinereus
ENSOCUG00000008450	UPF3A	99	59.671	ENSPPYG00000005536	UPF3A	98	59.671	Pongo_abelii
ENSOCUG00000008450	UPF3A	63	55.128	ENSPCAG00000013124	UPF3A	64	55.449	Procavia_capensis
ENSOCUG00000008450	UPF3A	88	56.552	ENSPVAG00000005656	UPF3A	88	56.552	Pteropus_vampyrus
ENSOCUG00000008450	UPF3A	85	58.049	ENSRNOG00000017397	Upf3a	86	62.222	Rattus_norvegicus
ENSOCUG00000008450	UPF3A	85	64.532	ENSRBIG00000034007	UPF3A	91	64.532	Rhinopithecus_bieti
ENSOCUG00000008450	UPF3A	85	64.532	ENSRROG00000012212	UPF3A	85	64.532	Rhinopithecus_roxellana
ENSOCUG00000008450	UPF3A	77	59.424	ENSSBOG00000029989	UPF3A	84	59.424	Saimiri_boliviensis_boliviensis
ENSOCUG00000008450	UPF3A	82	59.179	ENSSHAG00000009895	UPF3A	98	59.179	Sarcophilus_harrisii
ENSOCUG00000008450	UPF3A	52	49.615	ENSSFOG00015005614	upf3b	93	43.187	Scleropages_formosus
ENSOCUG00000008450	UPF3A	94	48.430	ENSSFOG00015021851	upf3a	89	50.868	Scleropages_formosus
ENSOCUG00000008450	UPF3A	50	51.181	ENSSMAG00000012913	upf3b	90	42.792	Scophthalmus_maximus
ENSOCUG00000008450	UPF3A	78	47.802	ENSSDUG00000009680	upf3a	81	49.231	Seriola_dumerili
ENSOCUG00000008450	UPF3A	78	49.086	ENSSARG00000007262	UPF3A	92	50.000	Sorex_araneus
ENSOCUG00000008450	UPF3A	53	49.627	ENSSPAG00000009989	upf3b	89	43.675	Stegastes_partitus
ENSOCUG00000008450	UPF3A	99	59.343	ENSSSCG00000024679	UPF3A	96	59.343	Sus_scrofa
ENSOCUG00000008450	UPF3A	82	58.065	ENSTGUG00000009493	UPF3A	99	57.960	Taeniopygia_guttata
ENSOCUG00000008450	UPF3A	82	45.455	ENSTNIG00000014973	upf3a	96	47.397	Tetraodon_nigroviridis
ENSOCUG00000008450	UPF3A	60	54.276	ENSTBEG00000017186	-	95	54.276	Tupaia_belangeri
ENSOCUG00000008450	UPF3A	93	53.070	ENSTTRG00000015414	UPF3A	78	58.486	Tursiops_truncatus
ENSOCUG00000008450	UPF3A	85	60.095	ENSVPAG00000003525	UPF3A	100	60.095	Vicugna_pacos
ENSOCUG00000008450	UPF3A	85	60.563	ENSVVUG00000013538	UPF3A	84	60.563	Vulpes_vulpes
ENSOCUG00000008450	UPF3A	81	47.891	ENSXETG00000002572	upf3a	91	49.492	Xenopus_tropicalis
ENSOCUG00000008450	UPF3A	80	41.176	ENSXETG00000007440	upf3b	68	67.296	Xenopus_tropicalis