EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000008566 (Gene tree)
Gene ID: 100358461
Gene Symbol: -
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 25720 bases
Position: chr19:44386919-44412638
Accession: 100358461
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000007401	AD	PF09793.9	1.5e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000008562	-	594	XM_002719431	ENSOCUP00000007401	198 (aa)	-	G1SVE6

Gene Model

Click here to download ENSOCUG00000008566's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000008566's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000008566	-	99	90.355	ENSOCUG00000024823	-	100	90.355
ENSOCUG00000008566	-	99	91.371	ENSOCUG00000027889	-	100	91.371
ENSOCUG00000008566	-	99	91.371	ENSOCUG00000021254	-	100	91.371

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000008566	-	100	97.980	ENSG00000161654	LSM12	100	97.980	Homo_sapiens
ENSOCUG00000008566	-	100	84.422	ENSAPOG00000007907	lsm12b	100	84.422	Acanthochromis_polyacanthus
ENSOCUG00000008566	-	100	100.000	ENSAMEG00000018321	LSM12	100	100.000	Ailuropoda_melanoleuca
ENSOCUG00000008566	-	100	82.412	ENSACIG00000008538	lsm12b	100	82.412	Amphilophus_citrinellus
ENSOCUG00000008566	-	100	83.920	ENSAOCG00000021847	lsm12b	88	83.920	Amphiprion_ocellaris
ENSOCUG00000008566	-	100	83.920	ENSAPEG00000002252	lsm12b	100	83.920	Amphiprion_percula
ENSOCUG00000008566	-	100	83.417	ENSATEG00000005705	lsm12b	100	83.417	Anabas_testudineus
ENSOCUG00000008566	-	99	91.837	ENSACAG00000004618	LSM12	99	91.837	Anolis_carolinensis
ENSOCUG00000008566	-	100	97.980	ENSANAG00000029011	LSM12	100	100.000	Aotus_nancymaae
ENSOCUG00000008566	-	100	82.915	ENSACLG00000026332	lsm12b	100	82.915	Astatotilapia_calliptera
ENSOCUG00000008566	-	100	82.915	ENSAMXG00000032952	lsm12b	100	82.915	Astyanax_mexicanus
ENSOCUG00000008566	-	100	77.387	ENSAMXG00000036117	lsm12a	91	77.387	Astyanax_mexicanus
ENSOCUG00000008566	-	100	97.980	ENSBTAG00000016252	LSM12	100	97.980	Bos_taurus
ENSOCUG00000008566	-	100	97.980	ENSCJAG00000048480	LSM12	100	100.000	Callithrix_jacchus
ENSOCUG00000008566	-	100	97.980	ENSCAFG00000014379	LSM12	92	97.980	Canis_familiaris
ENSOCUG00000008566	-	100	97.980	ENSCAFG00020012173	LSM12	100	97.980	Canis_lupus_dingo
ENSOCUG00000008566	-	100	97.980	ENSCHIG00000018175	LSM12	100	97.980	Capra_hircus
ENSOCUG00000008566	-	100	97.980	ENSTSYG00000036361	LSM12	100	97.980	Carlito_syrichta
ENSOCUG00000008566	-	81	96.875	ENSCAPG00000009647	LSM12	87	96.875	Cavia_aperea
ENSOCUG00000008566	-	100	95.960	ENSCPOG00000012860	LSM12	100	98.165	Cavia_porcellus
ENSOCUG00000008566	-	100	97.980	ENSCCAG00000032905	LSM12	100	100.000	Cebus_capucinus
ENSOCUG00000008566	-	100	97.980	ENSCATG00000030577	-	100	100.000	Cercocebus_atys
ENSOCUG00000008566	-	100	96.970	ENSCLAG00000015759	LSM12	100	98.165	Chinchilla_lanigera
ENSOCUG00000008566	-	100	97.475	ENSCSAG00000003486	LSM12	100	97.475	Chlorocebus_sabaeus
ENSOCUG00000008566	-	55	99.083	ENSCHOG00000001198	LSM12	100	99.083	Choloepus_hoffmanni
ENSOCUG00000008566	-	99	91.327	ENSCPBG00000027105	LSM12	99	91.327	Chrysemys_picta_bellii
ENSOCUG00000008566	-	100	97.980	ENSCANG00000043328	LSM12	100	100.000	Colobus_angolensis_palliatus
ENSOCUG00000008566	-	100	97.980	ENSCGRG00001002094	Lsm12	100	100.000	Cricetulus_griseus_chok1gshd
ENSOCUG00000008566	-	78	99.351	ENSCGRG00000004316	Lsm12	87	99.351	Cricetulus_griseus_crigri
ENSOCUG00000008566	-	100	82.915	ENSCSEG00000008434	lsm12b	100	82.915	Cynoglossus_semilaevis
ENSOCUG00000008566	-	100	82.915	ENSCVAG00000008755	lsm12b	100	82.915	Cyprinodon_variegatus
ENSOCUG00000008566	-	100	83.417	ENSDARG00000109510	lsm12b	100	83.417	Danio_rerio
ENSOCUG00000008566	-	100	75.377	ENSDARG00000028848	lsm12a	100	75.377	Danio_rerio
ENSOCUG00000008566	-	100	97.475	ENSDNOG00000002418	LSM12	91	97.475	Dasypus_novemcinctus
ENSOCUG00000008566	-	100	97.980	ENSDORG00000016381	Lsm12	100	100.000	Dipodomys_ordii
ENSOCUG00000008566	-	74	30.435	FBgn0036057	CG14164	83	30.435	Drosophila_melanogaster
ENSOCUG00000008566	-	83	31.953	FBgn0030364	Lsm12	76	31.765	Drosophila_melanogaster
ENSOCUG00000008566	-	100	97.475	ENSETEG00000008374	LSM12	100	97.475	Echinops_telfairi
ENSOCUG00000008566	-	90	85.955	ENSETEG00000011012	-	100	85.955	Echinops_telfairi
ENSOCUG00000008566	-	84	61.677	ENSEBUG00000016299	lsm12a	92	61.677	Eptatretus_burgeri
ENSOCUG00000008566	-	100	97.980	ENSEASG00005010155	LSM12	100	97.980	Equus_asinus_asinus
ENSOCUG00000008566	-	100	97.980	ENSECAG00000009071	LSM12	100	100.000	Equus_caballus
ENSOCUG00000008566	-	77	98.693	ENSEEUG00000002419	-	100	98.693	Erinaceus_europaeus
ENSOCUG00000008566	-	100	82.412	ENSELUG00000015538	lsm12b	100	77.889	Esox_lucius
ENSOCUG00000008566	-	100	80.402	ENSELUG00000000256	-	100	80.402	Esox_lucius
ENSOCUG00000008566	-	100	97.980	ENSFCAG00000037021	LSM12	100	97.980	Felis_catus
ENSOCUG00000008566	-	75	99.324	ENSFDAG00000008954	LSM12	87	99.324	Fukomys_damarensis
ENSOCUG00000008566	-	100	81.910	ENSFHEG00000019913	lsm12b	100	81.910	Fundulus_heteroclitus
ENSOCUG00000008566	-	80	81.646	ENSGMOG00000015449	lsm12b	100	81.646	Gadus_morhua
ENSOCUG00000008566	-	77	94.118	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSOCUG00000008566	-	100	82.412	ENSGAFG00000011829	lsm12b	100	82.412	Gambusia_affinis
ENSOCUG00000008566	-	80	82.278	ENSGACG00000003428	lsm12b	100	82.278	Gasterosteus_aculeatus
ENSOCUG00000008566	-	99	92.347	ENSGAGG00000021965	LSM12	99	92.347	Gopherus_agassizii
ENSOCUG00000008566	-	100	97.980	ENSGGOG00000010589	-	100	100.000	Gorilla_gorilla
ENSOCUG00000008566	-	85	83.529	ENSHBUG00000007667	lsm12b	74	83.529	Haplochromis_burtoni
ENSOCUG00000008566	-	100	97.980	ENSHGLG00000011411	LSM12	100	100.000	Heterocephalus_glaber_female
ENSOCUG00000008566	-	91	88.398	ENSHGLG00100000241	LSM12	96	88.398	Heterocephalus_glaber_male
ENSOCUG00000008566	-	100	82.412	ENSHCOG00000002094	lsm12b	100	82.412	Hippocampus_comes
ENSOCUG00000008566	-	100	83.417	ENSIPUG00000014800	lsm12	100	83.417	Ictalurus_punctatus
ENSOCUG00000008566	-	99	74.112	ENSIPUG00000008936	lsm12a	99	74.112	Ictalurus_punctatus
ENSOCUG00000008566	-	100	97.980	ENSSTOG00000007403	LSM12	100	100.000	Ictidomys_tridecemlineatus
ENSOCUG00000008566	-	81	82.716	ENSJJAG00000014652	-	95	82.716	Jaculus_jaculus
ENSOCUG00000008566	-	97	86.010	ENSJJAG00000011793	-	100	86.010	Jaculus_jaculus
ENSOCUG00000008566	-	100	96.970	ENSJJAG00000004364	-	100	99.083	Jaculus_jaculus
ENSOCUG00000008566	-	86	84.211	ENSKMAG00000007704	lsm12b	57	84.211	Kryptolebias_marmoratus
ENSOCUG00000008566	-	100	83.920	ENSLBEG00000027999	lsm12b	100	83.920	Labrus_bergylta
ENSOCUG00000008566	-	99	88.265	ENSLACG00000015981	LSM12	99	88.265	Latimeria_chalumnae
ENSOCUG00000008566	-	100	81.910	ENSLOCG00000013079	lsm12b	99	81.910	Lepisosteus_oculatus
ENSOCUG00000008566	-	100	97.980	ENSLAFG00000005202	LSM12	100	97.980	Loxodonta_africana
ENSOCUG00000008566	-	100	97.980	ENSMFAG00000031376	LSM12	100	100.000	Macaca_fascicularis
ENSOCUG00000008566	-	100	97.980	ENSMMUG00000006804	LSM12	100	100.000	Macaca_mulatta
ENSOCUG00000008566	-	64	86.207	ENSMMUG00000038408	-	100	86.207	Macaca_mulatta
ENSOCUG00000008566	-	64	86.207	ENSMMUG00000042106	-	100	86.207	Macaca_mulatta
ENSOCUG00000008566	-	100	97.980	ENSMNEG00000030594	-	100	100.000	Macaca_nemestrina
ENSOCUG00000008566	-	100	97.980	ENSMLEG00000039934	LSM12	100	100.000	Mandrillus_leucophaeus
ENSOCUG00000008566	-	100	83.417	ENSMAMG00000004279	lsm12b	100	83.417	Mastacembelus_armatus
ENSOCUG00000008566	-	100	82.915	ENSMZEG00005005754	lsm12b	100	82.915	Maylandia_zebra
ENSOCUG00000008566	-	100	97.475	ENSMICG00000037219	LSM12	100	99.083	Microcebus_murinus
ENSOCUG00000008566	-	100	97.980	ENSMOCG00000019878	-	100	100.000	Microtus_ochrogaster
ENSOCUG00000008566	-	100	82.323	ENSMOCG00000017015	-	86	82.323	Microtus_ochrogaster
ENSOCUG00000008566	-	100	83.417	ENSMMOG00000020848	lsm12b	100	83.417	Mola_mola
ENSOCUG00000008566	-	100	83.417	ENSMALG00000007578	lsm12b	100	83.417	Monopterus_albus
ENSOCUG00000008566	-	100	97.475	MGP_CAROLIEiJ_G0017241	Lsm12	100	99.083	Mus_caroli
ENSOCUG00000008566	-	100	97.980	ENSMUSG00000020922	Lsm12	100	100.000	Mus_musculus
ENSOCUG00000008566	-	100	90.233	MGP_PahariEiJ_G0018371	Lsm12	100	100.000	Mus_pahari
ENSOCUG00000008566	-	100	97.475	MGP_SPRETEiJ_G0018084	Lsm12	99	100.000	Mus_spretus
ENSOCUG00000008566	-	100	97.475	ENSMLUG00000006391	LSM12	100	97.475	Myotis_lucifugus
ENSOCUG00000008566	-	100	66.832	ENSNGAG00000015429	-	100	66.832	Nannospalax_galili
ENSOCUG00000008566	-	100	97.980	ENSNGAG00000001870	Lsm12	100	100.000	Nannospalax_galili
ENSOCUG00000008566	-	100	82.915	ENSNBRG00000006266	lsm12b	100	82.915	Neolamprologus_brichardi
ENSOCUG00000008566	-	100	97.980	ENSNLEG00000005580	-	100	100.000	Nomascus_leucogenys
ENSOCUG00000008566	-	85	95.833	ENSMEUG00000007501	-	100	95.833	Notamacropus_eugenii
ENSOCUG00000008566	-	100	97.980	ENSOPRG00000008552	LSM12	100	97.980	Ochotona_princeps
ENSOCUG00000008566	-	100	86.869	ENSODEG00000007886	-	74	86.869	Octodon_degus
ENSOCUG00000008566	-	100	96.465	ENSODEG00000017998	-	100	98.165	Octodon_degus
ENSOCUG00000008566	-	100	82.915	ENSONIG00000007933	lsm12b	100	82.915	Oreochromis_niloticus
ENSOCUG00000008566	-	100	83.417	ENSORLG00000011310	lsm12b	100	83.417	Oryzias_latipes
ENSOCUG00000008566	-	100	83.417	ENSORLG00020002060	lsm12b	92	83.417	Oryzias_latipes_hni
ENSOCUG00000008566	-	100	83.417	ENSORLG00015001647	lsm12b	92	83.417	Oryzias_latipes_hsok
ENSOCUG00000008566	-	100	83.417	ENSOMEG00000006184	lsm12b	92	83.417	Oryzias_melastigma
ENSOCUG00000008566	-	100	97.475	ENSOGAG00000010489	LSM12	100	97.475	Otolemur_garnettii
ENSOCUG00000008566	-	100	98.507	ENSOARG00000006589	LSM12	100	98.507	Ovis_aries
ENSOCUG00000008566	-	100	88.384	ENSPPAG00000034974	-	92	100.000	Pan_paniscus
ENSOCUG00000008566	-	100	97.980	ENSPPRG00000023420	LSM12	100	97.980	Panthera_pardus
ENSOCUG00000008566	-	72	96.396	ENSPTIG00000014850	-	100	96.396	Panthera_tigris_altaica
ENSOCUG00000008566	-	77	100.000	ENSPTIG00000012704	-	82	100.000	Panthera_tigris_altaica
ENSOCUG00000008566	-	100	97.980	ENSPTRG00000009261	LSM12	100	100.000	Pan_troglodytes
ENSOCUG00000008566	-	100	97.980	ENSPANG00000021315	-	100	100.000	Papio_anubis
ENSOCUG00000008566	-	100	84.422	ENSPKIG00000021058	lsm12b	100	84.422	Paramormyrops_kingsleyae
ENSOCUG00000008566	-	99	75.127	ENSPKIG00000017932	-	99	75.127	Paramormyrops_kingsleyae
ENSOCUG00000008566	-	100	82.915	ENSPMGG00000021344	lsm12b	100	82.915	Periophthalmus_magnuspinnatus
ENSOCUG00000008566	-	100	97.980	ENSPEMG00000012199	Lsm12	100	100.000	Peromyscus_maniculatus_bairdii
ENSOCUG00000008566	-	88	64.571	ENSPMAG00000005461	lsm12a	99	64.571	Petromyzon_marinus
ENSOCUG00000008566	-	100	94.949	ENSPCIG00000020244	LSM12	100	94.949	Phascolarctos_cinereus
ENSOCUG00000008566	-	100	81.407	ENSPFOG00000015930	lsm12b	100	81.407	Poecilia_formosa
ENSOCUG00000008566	-	100	81.407	ENSPLAG00000021089	lsm12b	100	81.407	Poecilia_latipinna
ENSOCUG00000008566	-	100	81.407	ENSPMEG00000012961	lsm12b	100	81.407	Poecilia_mexicana
ENSOCUG00000008566	-	88	83.333	ENSPREG00000010236	lsm12b	95	83.333	Poecilia_reticulata
ENSOCUG00000008566	-	100	97.980	ENSPPYG00000008344	LSM12	100	97.980	Pongo_abelii
ENSOCUG00000008566	-	82	96.914	ENSPCAG00000008790	LSM12	100	96.914	Procavia_capensis
ENSOCUG00000008566	-	100	97.980	ENSPCOG00000027951	LSM12	100	100.000	Propithecus_coquereli
ENSOCUG00000008566	-	100	97.475	ENSPVAG00000013706	LSM12	100	97.475	Pteropus_vampyrus
ENSOCUG00000008566	-	100	82.915	ENSPNYG00000003386	lsm12b	100	82.915	Pundamilia_nyererei
ENSOCUG00000008566	-	100	75.377	ENSPNAG00000018435	lsm12a	100	75.377	Pygocentrus_nattereri
ENSOCUG00000008566	-	100	81.407	ENSPNAG00000004186	lsm12b	100	81.407	Pygocentrus_nattereri
ENSOCUG00000008566	-	100	97.980	ENSRNOG00000020894	Lsm12	100	97.980	Rattus_norvegicus
ENSOCUG00000008566	-	100	97.980	ENSRBIG00000027910	LSM12	100	100.000	Rhinopithecus_bieti
ENSOCUG00000008566	-	81	82.759	ENSRROG00000000537	-	100	82.759	Rhinopithecus_roxellana
ENSOCUG00000008566	-	100	97.980	ENSRROG00000045530	-	100	100.000	Rhinopithecus_roxellana
ENSOCUG00000008566	-	100	97.980	ENSSBOG00000025310	LSM12	100	100.000	Saimiri_boliviensis_boliviensis
ENSOCUG00000008566	-	78	96.104	ENSSHAG00000014914	LSM12	97	96.104	Sarcophilus_harrisii
ENSOCUG00000008566	-	100	84.422	ENSSFOG00015009612	lsm12	100	84.422	Scleropages_formosus
ENSOCUG00000008566	-	100	81.407	ENSSFOG00015020392	lsm12a	100	81.407	Scleropages_formosus
ENSOCUG00000008566	-	100	83.417	ENSSMAG00000008089	lsm12b	100	83.417	Scophthalmus_maximus
ENSOCUG00000008566	-	100	84.422	ENSSDUG00000012711	lsm12b	100	84.422	Seriola_dumerili
ENSOCUG00000008566	-	100	84.422	ENSSLDG00000007404	lsm12b	100	84.422	Seriola_lalandi_dorsalis
ENSOCUG00000008566	-	77	99.346	ENSSARG00000005537	LSM12	100	99.346	Sorex_araneus
ENSOCUG00000008566	-	99	92.857	ENSSPUG00000011984	LSM12	99	92.857	Sphenodon_punctatus
ENSOCUG00000008566	-	100	83.920	ENSSPAG00000017058	lsm12b	100	83.920	Stegastes_partitus
ENSOCUG00000008566	-	100	97.980	ENSSSCG00000032394	LSM12	100	97.980	Sus_scrofa
ENSOCUG00000008566	-	100	82.412	ENSTRUG00000007121	lsm12b	100	82.412	Takifugu_rubripes
ENSOCUG00000008566	-	100	82.915	ENSTNIG00000014436	lsm12b	100	82.915	Tetraodon_nigroviridis
ENSOCUG00000008566	-	100	97.475	ENSTBEG00000012523	-	100	97.475	Tupaia_belangeri
ENSOCUG00000008566	-	100	94.444	ENSTBEG00000012392	-	100	94.444	Tupaia_belangeri
ENSOCUG00000008566	-	100	97.980	ENSTTRG00000010433	LSM12	100	97.980	Tursiops_truncatus
ENSOCUG00000008566	-	100	97.980	ENSUAMG00000006313	LSM12	100	97.980	Ursus_americanus
ENSOCUG00000008566	-	80	98.734	ENSUMAG00000012987	LSM12	90	98.734	Ursus_maritimus
ENSOCUG00000008566	-	100	92.424	ENSVPAG00000011145	LSM12	100	92.424	Vicugna_pacos
ENSOCUG00000008566	-	100	97.980	ENSVVUG00000017581	LSM12	100	97.980	Vulpes_vulpes
ENSOCUG00000008566	-	82	63.804	ENSXETG00000003371	lsm12	77	63.804	Xenopus_tropicalis
ENSOCUG00000008566	-	100	82.412	ENSXCOG00000003994	lsm12b	100	82.412	Xiphophorus_couchianus
ENSOCUG00000008566	-	100	82.412	ENSXMAG00000020950	lsm12b	100	82.412	Xiphophorus_maculatus