EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000009456 (Gene tree)
Gene ID: 100348263
Gene Symbol: TRUB1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 53213 bases
Position: chr18:62488278-62541490
Accession: 100348263
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000008156	TruB_N	PF01509.18	4.5e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000009456	TRUB1-201	2178	XM_002718725	ENSOCUP00000008156	346 (aa)	XP_002718771	G1SX93

Gene Model

Click here to download ENSOCUG00000009456's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000009456's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000009456	TRUB1	64	33.333	ENSOCUG00000026296	TRUB2	61	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000009456	TRUB1	99	83.095	ENSG00000165832	TRUB1	99	83.095	Homo_sapiens
ENSOCUG00000009456	TRUB1	71	67.755	ENSAPOG00000020565	trub1	89	67.480	Acanthochromis_polyacanthus
ENSOCUG00000009456	TRUB1	96	86.787	ENSAMEG00000014931	TRUB1	99	83.476	Ailuropoda_melanoleuca
ENSOCUG00000009456	TRUB1	77	58.427	ENSACIG00000003060	trub1	88	58.427	Amphilophus_citrinellus
ENSOCUG00000009456	TRUB1	71	67.755	ENSAOCG00000017188	trub1	89	67.480	Amphiprion_ocellaris
ENSOCUG00000009456	TRUB1	71	67.073	ENSAPEG00000015209	trub1	89	67.073	Amphiprion_percula
ENSOCUG00000009456	TRUB1	70	68.050	ENSATEG00000023291	trub1	86	68.050	Anabas_testudineus
ENSOCUG00000009456	TRUB1	79	73.455	ENSAPLG00000006808	TRUB1	99	73.455	Anas_platyrhynchos
ENSOCUG00000009456	TRUB1	79	69.231	ENSACAG00000009282	TRUB1	99	69.231	Anolis_carolinensis
ENSOCUG00000009456	TRUB1	95	87.273	ENSANAG00000022870	TRUB1	85	89.000	Aotus_nancymaae
ENSOCUG00000009456	TRUB1	73	66.270	ENSACLG00000000823	trub1	91	66.270	Astatotilapia_calliptera
ENSOCUG00000009456	TRUB1	77	65.038	ENSAMXG00000015845	trub1	89	65.038	Astyanax_mexicanus
ENSOCUG00000009456	TRUB1	96	87.952	ENSBTAG00000012955	TRUB1	94	87.952	Bos_taurus
ENSOCUG00000009456	TRUB1	99	83.853	ENSCJAG00000047815	TRUB1	99	83.853	Callithrix_jacchus
ENSOCUG00000009456	TRUB1	100	84.857	ENSCAFG00000011688	TRUB1	100	84.857	Canis_familiaris
ENSOCUG00000009456	TRUB1	100	85.143	ENSCAFG00020013237	TRUB1	100	85.143	Canis_lupus_dingo
ENSOCUG00000009456	TRUB1	96	87.048	ENSCHIG00000020884	TRUB1	95	87.048	Capra_hircus
ENSOCUG00000009456	TRUB1	87	88.372	ENSTSYG00000000446	TRUB1	86	88.372	Carlito_syrichta
ENSOCUG00000009456	TRUB1	73	77.866	ENSCAPG00000017088	TRUB1	99	77.866	Cavia_aperea
ENSOCUG00000009456	TRUB1	56	88.718	ENSCPOG00000030129	-	76	88.718	Cavia_porcellus
ENSOCUG00000009456	TRUB1	66	83.700	ENSCPOG00000040236	-	81	88.325	Cavia_porcellus
ENSOCUG00000009456	TRUB1	96	87.009	ENSCCAG00000028842	TRUB1	86	89.037	Cebus_capucinus
ENSOCUG00000009456	TRUB1	99	83.381	ENSCATG00000033431	TRUB1	86	88.704	Cercocebus_atys
ENSOCUG00000009456	TRUB1	65	85.841	ENSCLAG00000008664	TRUB1	81	88.832	Chinchilla_lanigera
ENSOCUG00000009456	TRUB1	99	83.668	ENSCSAG00000004891	TRUB1	86	89.037	Chlorocebus_sabaeus
ENSOCUG00000009456	TRUB1	100	71.143	ENSCHOG00000011931	TRUB1	100	71.143	Choloepus_hoffmanni
ENSOCUG00000009456	TRUB1	79	77.574	ENSCPBG00000003051	TRUB1	94	77.574	Chrysemys_picta_bellii
ENSOCUG00000009456	TRUB1	99	83.668	ENSCANG00000029445	TRUB1	86	89.037	Colobus_angolensis_palliatus
ENSOCUG00000009456	TRUB1	81	74.021	ENSCGRG00001010322	-	80	74.324	Cricetulus_griseus_chok1gshd
ENSOCUG00000009456	TRUB1	83	72.917	ENSCGRG00001016772	-	90	74.161	Cricetulus_griseus_chok1gshd
ENSOCUG00000009456	TRUB1	81	82.562	ENSCGRG00000010806	Trub1	91	82.215	Cricetulus_griseus_crigri
ENSOCUG00000009456	TRUB1	73	63.095	ENSCSEG00000011261	trub1	81	63.095	Cynoglossus_semilaevis
ENSOCUG00000009456	TRUB1	71	68.163	ENSCVAG00000008791	trub1	78	66.667	Cyprinodon_variegatus
ENSOCUG00000009456	TRUB1	76	64.773	ENSDARG00000053805	trub1	91	64.773	Danio_rerio
ENSOCUG00000009456	TRUB1	96	82.530	ENSDNOG00000001069	TRUB1	100	79.772	Dasypus_novemcinctus
ENSOCUG00000009456	TRUB1	97	83.881	ENSDORG00000010431	Trub1	87	88.079	Dipodomys_ordii
ENSOCUG00000009456	TRUB1	65	81.690	ENSETEG00000009183	TRUB1	65	79.195	Echinops_telfairi
ENSOCUG00000009456	TRUB1	97	88.623	ENSEASG00005014739	TRUB1	100	85.714	Equus_asinus_asinus
ENSOCUG00000009456	TRUB1	97	88.623	ENSECAG00000007177	TRUB1	100	85.714	Equus_caballus
ENSOCUG00000009456	TRUB1	85	76.109	ENSEEUG00000013993	TRUB1	83	75.585	Erinaceus_europaeus
ENSOCUG00000009456	TRUB1	71	67.347	ENSELUG00000000502	trub1	86	67.347	Esox_lucius
ENSOCUG00000009456	TRUB1	87	90.000	ENSFCAG00000031927	TRUB1	86	90.000	Felis_catus
ENSOCUG00000009456	TRUB1	69	73.750	ENSFALG00000002232	TRUB1	92	73.750	Ficedula_albicollis
ENSOCUG00000009456	TRUB1	66	86.784	ENSFDAG00000008140	TRUB1	93	86.784	Fukomys_damarensis
ENSOCUG00000009456	TRUB1	71	66.122	ENSFHEG00000004016	trub1	84	66.122	Fundulus_heteroclitus
ENSOCUG00000009456	TRUB1	79	73.897	ENSGALG00000009091	TRUB1	96	73.897	Gallus_gallus
ENSOCUG00000009456	TRUB1	69	64.435	ENSGAFG00000009193	trub1	86	63.525	Gambusia_affinis
ENSOCUG00000009456	TRUB1	56	67.692	ENSGACG00000015387	trub1	96	67.692	Gasterosteus_aculeatus
ENSOCUG00000009456	TRUB1	84	75.517	ENSGAGG00000009758	TRUB1	81	76.056	Gopherus_agassizii
ENSOCUG00000009456	TRUB1	99	83.668	ENSGGOG00000004583	TRUB1	99	83.668	Gorilla_gorilla
ENSOCUG00000009456	TRUB1	77	63.296	ENSHBUG00000016787	trub1	91	66.270	Haplochromis_burtoni
ENSOCUG00000009456	TRUB1	97	83.234	ENSHGLG00000015314	TRUB1	96	83.234	Heterocephalus_glaber_female
ENSOCUG00000009456	TRUB1	56	89.231	ENSHGLG00100009183	TRUB1	83	89.340	Heterocephalus_glaber_male
ENSOCUG00000009456	TRUB1	74	64.591	ENSHCOG00000017877	trub1	93	64.591	Hippocampus_comes
ENSOCUG00000009456	TRUB1	77	65.543	ENSIPUG00000017559	trub1	94	65.543	Ictalurus_punctatus
ENSOCUG00000009456	TRUB1	97	82.388	ENSSTOG00000003641	TRUB1	90	88.079	Ictidomys_tridecemlineatus
ENSOCUG00000009456	TRUB1	87	86.000	ENSJJAG00000011800	Trub1	88	86.000	Jaculus_jaculus
ENSOCUG00000009456	TRUB1	73	65.370	ENSKMAG00000006232	trub1	92	65.370	Kryptolebias_marmoratus
ENSOCUG00000009456	TRUB1	77	63.534	ENSLBEG00000026722	trub1	92	63.534	Labrus_bergylta
ENSOCUG00000009456	TRUB1	80	70.652	ENSLACG00000014885	TRUB1	92	70.652	Latimeria_chalumnae
ENSOCUG00000009456	TRUB1	80	70.036	ENSLOCG00000012979	trub1	92	70.696	Lepisosteus_oculatus
ENSOCUG00000009456	TRUB1	86	79.672	ENSLAFG00000015452	TRUB1	87	80.656	Loxodonta_africana
ENSOCUG00000009456	TRUB1	99	83.381	ENSMFAG00000031767	TRUB1	86	88.704	Macaca_fascicularis
ENSOCUG00000009456	TRUB1	99	83.668	ENSMMUG00000001902	TRUB1	86	89.037	Macaca_mulatta
ENSOCUG00000009456	TRUB1	99	79.656	ENSMNEG00000044646	TRUB1	86	84.053	Macaca_nemestrina
ENSOCUG00000009456	TRUB1	99	83.381	ENSMLEG00000042655	TRUB1	86	89.037	Mandrillus_leucophaeus
ENSOCUG00000009456	TRUB1	73	66.270	ENSMZEG00005024095	trub1	91	66.270	Maylandia_zebra
ENSOCUG00000009456	TRUB1	78	74.444	ENSMGAG00000011135	TRUB1	93	74.444	Meleagris_gallopavo
ENSOCUG00000009456	TRUB1	81	79.715	ENSMAUG00000011101	Trub1	89	79.402	Mesocricetus_auratus
ENSOCUG00000009456	TRUB1	100	85.673	ENSMICG00000016324	TRUB1	100	85.673	Microcebus_murinus
ENSOCUG00000009456	TRUB1	94	77.607	ENSMOCG00000017759	Trub1	91	81.126	Microtus_ochrogaster
ENSOCUG00000009456	TRUB1	83	79.720	ENSMODG00000009676	TRUB1	81	78.378	Monodelphis_domestica
ENSOCUG00000009456	TRUB1	100	76.590	MGP_CAROLIEiJ_G0023100	Trub1	89	82.119	Mus_caroli
ENSOCUG00000009456	TRUB1	100	75.434	ENSMUSG00000025086	Trub1	89	81.126	Mus_musculus
ENSOCUG00000009456	TRUB1	87	81.457	MGP_PahariEiJ_G0014588	Trub1	89	81.457	Mus_pahari
ENSOCUG00000009456	TRUB1	100	75.723	MGP_SPRETEiJ_G0024021	Trub1	89	81.457	Mus_spretus
ENSOCUG00000009456	TRUB1	96	87.988	ENSMPUG00000003556	TRUB1	99	85.100	Mustela_putorius_furo
ENSOCUG00000009456	TRUB1	96	83.183	ENSMLUG00000017686	TRUB1	89	86.711	Myotis_lucifugus
ENSOCUG00000009456	TRUB1	100	81.322	ENSNGAG00000018682	Trub1	100	81.322	Nannospalax_galili
ENSOCUG00000009456	TRUB1	71	67.480	ENSNBRG00000023393	trub1	88	67.480	Neolamprologus_brichardi
ENSOCUG00000009456	TRUB1	96	86.186	ENSNLEG00000016345	TRUB1	86	89.037	Nomascus_leucogenys
ENSOCUG00000009456	TRUB1	58	87.562	ENSMEUG00000006603	TRUB1	78	85.308	Notamacropus_eugenii
ENSOCUG00000009456	TRUB1	100	79.480	ENSOPRG00000009371	TRUB1	100	80.058	Ochotona_princeps
ENSOCUG00000009456	TRUB1	96	79.758	ENSODEG00000010854	TRUB1	86	82.943	Octodon_degus
ENSOCUG00000009456	TRUB1	71	66.260	ENSONIG00000007249	trub1	89	66.260	Oreochromis_niloticus
ENSOCUG00000009456	TRUB1	79	78.388	ENSOANG00000001556	TRUB1	93	76.241	Ornithorhynchus_anatinus
ENSOCUG00000009456	TRUB1	70	68.465	ENSORLG00000029719	trub1	91	66.535	Oryzias_latipes
ENSOCUG00000009456	TRUB1	70	68.050	ENSORLG00020016767	trub1	90	66.142	Oryzias_latipes_hni
ENSOCUG00000009456	TRUB1	70	68.465	ENSORLG00015014728	trub1	91	66.535	Oryzias_latipes_hsok
ENSOCUG00000009456	TRUB1	75	65.637	ENSOMEG00000014556	trub1	90	65.759	Oryzias_melastigma
ENSOCUG00000009456	TRUB1	97	88.657	ENSOGAG00000015895	TRUB1	96	88.657	Otolemur_garnettii
ENSOCUG00000009456	TRUB1	85	86.424	ENSOARG00000015591	TRUB1	87	85.668	Ovis_aries
ENSOCUG00000009456	TRUB1	99	83.668	ENSPPAG00000043645	TRUB1	99	83.668	Pan_paniscus
ENSOCUG00000009456	TRUB1	95	88.182	ENSPPRG00000007096	TRUB1	99	85.014	Panthera_pardus
ENSOCUG00000009456	TRUB1	95	88.485	ENSPTIG00000006378	TRUB1	99	85.303	Panthera_tigris_altaica
ENSOCUG00000009456	TRUB1	99	83.668	ENSPTRG00000002964	TRUB1	99	83.668	Pan_troglodytes
ENSOCUG00000009456	TRUB1	99	83.381	ENSPANG00000020712	TRUB1	86	89.037	Papio_anubis
ENSOCUG00000009456	TRUB1	79	75.000	ENSPSIG00000012877	TRUB1	93	75.277	Pelodiscus_sinensis
ENSOCUG00000009456	TRUB1	71	64.490	ENSPMGG00000000075	trub1	88	64.490	Periophthalmus_magnuspinnatus
ENSOCUG00000009456	TRUB1	87	79.734	ENSPEMG00000011156	Trub1	89	79.734	Peromyscus_maniculatus_bairdii
ENSOCUG00000009456	TRUB1	83	79.371	ENSPCIG00000009729	TRUB1	80	78.041	Phascolarctos_cinereus
ENSOCUG00000009456	TRUB1	71	65.714	ENSPFOG00000009950	trub1	90	65.714	Poecilia_formosa
ENSOCUG00000009456	TRUB1	71	65.306	ENSPLAG00000013855	trub1	86	65.306	Poecilia_latipinna
ENSOCUG00000009456	TRUB1	71	65.714	ENSPMEG00000009064	trub1	88	65.714	Poecilia_mexicana
ENSOCUG00000009456	TRUB1	71	66.531	ENSPREG00000003343	trub1	88	66.531	Poecilia_reticulata
ENSOCUG00000009456	TRUB1	96	85.586	ENSPPYG00000002676	TRUB1	86	88.704	Pongo_abelii
ENSOCUG00000009456	TRUB1	87	74.000	ENSPCAG00000008427	TRUB1	85	74.000	Procavia_capensis
ENSOCUG00000009456	TRUB1	87	84.437	ENSPCOG00000024360	TRUB1	86	84.437	Propithecus_coquereli
ENSOCUG00000009456	TRUB1	61	91.038	ENSPVAG00000007575	TRUB1	100	84.030	Pteropus_vampyrus
ENSOCUG00000009456	TRUB1	73	66.270	ENSPNYG00000018614	trub1	91	66.270	Pundamilia_nyererei
ENSOCUG00000009456	TRUB1	75	58.846	ENSPNAG00000006881	trub1	84	58.846	Pygocentrus_nattereri
ENSOCUG00000009456	TRUB1	100	76.301	ENSRNOG00000017321	Trub1	89	81.788	Rattus_norvegicus
ENSOCUG00000009456	TRUB1	99	73.926	ENSRBIG00000033423	TRUB1	85	78.073	Rhinopithecus_bieti
ENSOCUG00000009456	TRUB1	99	83.381	ENSRROG00000033902	TRUB1	86	89.037	Rhinopithecus_roxellana
ENSOCUG00000009456	TRUB1	96	87.009	ENSSBOG00000024237	TRUB1	86	89.037	Saimiri_boliviensis_boliviensis
ENSOCUG00000009456	TRUB1	73	77.734	ENSSHAG00000009346	TRUB1	86	77.734	Sarcophilus_harrisii
ENSOCUG00000009456	TRUB1	70	69.959	ENSSFOG00015022124	trub1	83	69.959	Scleropages_formosus
ENSOCUG00000009456	TRUB1	71	67.480	ENSSMAG00000001020	trub1	88	67.480	Scophthalmus_maximus
ENSOCUG00000009456	TRUB1	69	68.333	ENSSDUG00000016414	trub1	88	68.293	Seriola_dumerili
ENSOCUG00000009456	TRUB1	69	68.750	ENSSLDG00000015486	trub1	88	68.699	Seriola_lalandi_dorsalis
ENSOCUG00000009456	TRUB1	79	78.309	ENSSPUG00000001642	TRUB1	93	78.309	Sphenodon_punctatus
ENSOCUG00000009456	TRUB1	76	65.779	ENSSPAG00000001217	trub1	94	65.779	Stegastes_partitus
ENSOCUG00000009456	TRUB1	100	82.000	ENSSSCG00000010653	TRUB1	100	82.000	Sus_scrofa
ENSOCUG00000009456	TRUB1	78	74.815	ENSTGUG00000010971	TRUB1	100	73.665	Taeniopygia_guttata
ENSOCUG00000009456	TRUB1	73	73.518	ENSTBEG00000002880	TRUB1	99	73.518	Tupaia_belangeri
ENSOCUG00000009456	TRUB1	62	90.278	ENSTTRG00000005767	TRUB1	82	90.278	Tursiops_truncatus
ENSOCUG00000009456	TRUB1	96	88.520	ENSUAMG00000024876	TRUB1	99	85.100	Ursus_americanus
ENSOCUG00000009456	TRUB1	85	90.102	ENSUMAG00000002411	TRUB1	88	89.527	Ursus_maritimus
ENSOCUG00000009456	TRUB1	100	83.143	ENSVPAG00000005507	TRUB1	100	83.143	Vicugna_pacos
ENSOCUG00000009456	TRUB1	86	88.926	ENSVVUG00000010085	TRUB1	73	88.742	Vulpes_vulpes
ENSOCUG00000009456	TRUB1	77	66.045	ENSXETG00000023828	trub1	97	65.926	Xenopus_tropicalis
ENSOCUG00000009456	TRUB1	70	63.786	ENSXCOG00000017847	trub1	86	63.786	Xiphophorus_couchianus
ENSOCUG00000009456	TRUB1	71	64.490	ENSXMAG00000014701	trub1	88	64.490	Xiphophorus_maculatus