EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000010138 (Gene tree)
Gene ID: 100340054
Gene Symbol: POLR1A
Alias: -
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 78458 bases
Position: chr2:100247451-100325908
Accession: 100340054
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000008750	RNA_pol_Rpb1_5	PF04998.17	1.5e-103	1	1
ENSOCUP00000008750	RNA_pol_Rpb1_4	PF05000.17	1.6e-25	1	1
ENSOCUP00000008750	RNA_pol_Rpb1_2	PF00623.20	1.3e-70	1	1
ENSOCUP00000008750	RNA_pol_Rpb1_3	PF04983.18	7.2e-37	1	1
ENSOCUP00000008750	RNA_pol_Rpb1_1	PF04997.12	1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000010152	POLR1A-201	5142	XM_002709657	ENSOCUP00000008750	1713 (aa)	XP_002709703	G1SYP7

Gene Model

Click here to download ENSOCUG00000010138's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000010138's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000010138	POLR1A	62	38.806	ENSOCUG00000017929	-	59	38.806
ENSOCUG00000010138	POLR1A	66	33.898	ENSOCUG00000012450	POLR3A	67	33.898

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000010138	POLR1A	100	90.703	ENSG00000068654	POLR1A	100	90.703	Homo_sapiens
ENSOCUG00000010138	POLR1A	69	68.013	ENSAPOG00000017945	polr1a	99	68.013	Acanthochromis_polyacanthus
ENSOCUG00000010138	POLR1A	100	90.529	ENSAMEG00000005807	POLR1A	100	92.213	Ailuropoda_melanoleuca
ENSOCUG00000010138	POLR1A	100	63.837	ENSACIG00000022147	polr1a	100	63.441	Amphilophus_citrinellus
ENSOCUG00000010138	POLR1A	100	66.647	ENSAOCG00000017336	polr1a	100	67.549	Amphiprion_ocellaris
ENSOCUG00000010138	POLR1A	100	66.589	ENSAPEG00000016105	polr1a	98	72.222	Amphiprion_percula
ENSOCUG00000010138	POLR1A	100	66.589	ENSATEG00000016773	polr1a	100	66.395	Anabas_testudineus
ENSOCUG00000010138	POLR1A	86	73.202	ENSAPLG00000013871	POLR1A	99	73.202	Anas_platyrhynchos
ENSOCUG00000010138	POLR1A	99	69.930	ENSACAG00000012141	POLR1A	99	68.894	Anolis_carolinensis
ENSOCUG00000010138	POLR1A	100	89.657	ENSANAG00000033927	POLR1A	100	89.541	Aotus_nancymaae
ENSOCUG00000010138	POLR1A	100	62.965	ENSACLG00000020541	polr1a	100	61.866	Astatotilapia_calliptera
ENSOCUG00000010138	POLR1A	100	89.523	ENSBTAG00000006481	POLR1A	100	89.523	Bos_taurus
ENSOCUG00000010138	POLR1A	99	38.757	WBGene00012999	rpoa-1	98	38.600	Caenorhabditis_elegans
ENSOCUG00000010138	POLR1A	100	89.773	ENSCJAG00000019547	POLR1A	100	89.773	Callithrix_jacchus
ENSOCUG00000010138	POLR1A	100	90.349	ENSCAFG00000007613	POLR1A	100	90.407	Canis_familiaris
ENSOCUG00000010138	POLR1A	100	90.145	ENSCAFG00020014752	POLR1A	100	90.203	Canis_lupus_dingo
ENSOCUG00000010138	POLR1A	100	87.965	ENSCHIG00000018204	POLR1A	100	87.907	Capra_hircus
ENSOCUG00000010138	POLR1A	100	87.631	ENSTSYG00000002761	POLR1A	100	87.456	Carlito_syrichta
ENSOCUG00000010138	POLR1A	97	85.278	ENSCAPG00000010132	POLR1A	100	84.952	Cavia_aperea
ENSOCUG00000010138	POLR1A	100	89.918	ENSCPOG00000012350	POLR1A	100	89.744	Cavia_porcellus
ENSOCUG00000010138	POLR1A	100	90.180	ENSCCAG00000019839	POLR1A	100	90.180	Cebus_capucinus
ENSOCUG00000010138	POLR1A	100	91.110	ENSCATG00000029786	POLR1A	100	91.110	Cercocebus_atys
ENSOCUG00000010138	POLR1A	100	90.180	ENSCLAG00000005187	POLR1A	100	90.006	Chinchilla_lanigera
ENSOCUG00000010138	POLR1A	100	91.110	ENSCSAG00000016251	POLR1A	100	91.110	Chlorocebus_sabaeus
ENSOCUG00000010138	POLR1A	99	75.350	ENSCPBG00000001115	POLR1A	99	74.681	Chrysemys_picta_bellii
ENSOCUG00000010138	POLR1A	99	46.975	ENSCSAVG00000007184	-	91	55.211	Ciona_savignyi
ENSOCUG00000010138	POLR1A	100	88.328	ENSCANG00000031785	POLR1A	100	88.328	Colobus_angolensis_palliatus
ENSOCUG00000010138	POLR1A	100	84.884	ENSCGRG00001006651	Polr1a	100	84.893	Cricetulus_griseus_chok1gshd
ENSOCUG00000010138	POLR1A	60	88.900	ENSCGRG00000010834	Polr1a	100	88.813	Cricetulus_griseus_crigri
ENSOCUG00000010138	POLR1A	100	62.442	ENSCSEG00000020190	polr1a	100	62.151	Cynoglossus_semilaevis
ENSOCUG00000010138	POLR1A	100	65.142	ENSCVAG00000020941	polr1a	100	64.537	Cyprinodon_variegatus
ENSOCUG00000010138	POLR1A	100	67.439	ENSDARG00000098375	polr1a	100	67.226	Danio_rerio
ENSOCUG00000010138	POLR1A	100	82.056	ENSDNOG00000010829	POLR1A	100	81.882	Dasypus_novemcinctus
ENSOCUG00000010138	POLR1A	100	88.850	ENSDORG00000008298	Polr1a	100	88.676	Dipodomys_ordii
ENSOCUG00000010138	POLR1A	80	44.357	FBgn0019938	RpI1	99	43.132	Drosophila_melanogaster
ENSOCUG00000010138	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSOCUG00000010138	POLR1A	89	47.604	ENSEBUG00000005667	-	99	48.026	Eptatretus_burgeri
ENSOCUG00000010138	POLR1A	100	91.226	ENSEASG00005001625	POLR1A	100	91.226	Equus_asinus_asinus
ENSOCUG00000010138	POLR1A	100	91.284	ENSECAG00000036306	-	100	93.035	Equus_caballus
ENSOCUG00000010138	POLR1A	100	91.284	ENSECAG00000010092	POLR1A	100	93.035	Equus_caballus
ENSOCUG00000010138	POLR1A	100	91.284	ENSECAG00000030510	-	100	93.035	Equus_caballus
ENSOCUG00000010138	POLR1A	85	95.745	ENSEEUG00000000676	POLR1A	85	95.556	Erinaceus_europaeus
ENSOCUG00000010138	POLR1A	100	68.102	ENSELUG00000012769	polr1a	99	68.259	Esox_lucius
ENSOCUG00000010138	POLR1A	100	90.122	ENSFCAG00000008966	POLR1A	100	90.180	Felis_catus
ENSOCUG00000010138	POLR1A	99	72.252	ENSFALG00000010082	POLR1A	99	72.193	Ficedula_albicollis
ENSOCUG00000010138	POLR1A	100	90.321	ENSFDAG00000013726	POLR1A	100	89.796	Fukomys_damarensis
ENSOCUG00000010138	POLR1A	100	61.899	ENSFHEG00000005996	polr1a	100	62.115	Fundulus_heteroclitus
ENSOCUG00000010138	POLR1A	100	60.210	ENSGMOG00000002230	polr1a	100	59.896	Gadus_morhua
ENSOCUG00000010138	POLR1A	90	69.904	ENSGALG00000038160	-	99	69.968	Gallus_gallus
ENSOCUG00000010138	POLR1A	100	65.212	ENSGAFG00000015266	polr1a	100	65.038	Gambusia_affinis
ENSOCUG00000010138	POLR1A	100	64.821	ENSGACG00000018791	polr1a	100	64.801	Gasterosteus_aculeatus
ENSOCUG00000010138	POLR1A	89	76.743	ENSGAGG00000004984	-	96	81.795	Gopherus_agassizii
ENSOCUG00000010138	POLR1A	100	90.703	ENSGGOG00000001788	POLR1A	100	90.703	Gorilla_gorilla
ENSOCUG00000010138	POLR1A	91	64.893	ENSHBUG00000020021	polr1a	98	65.096	Haplochromis_burtoni
ENSOCUG00000010138	POLR1A	100	90.268	ENSHGLG00000006334	POLR1A	100	90.093	Heterocephalus_glaber_female
ENSOCUG00000010138	POLR1A	100	90.006	ENSHGLG00100006614	POLR1A	100	89.831	Heterocephalus_glaber_male
ENSOCUG00000010138	POLR1A	100	62.877	ENSHCOG00000003345	polr1a	100	62.877	Hippocampus_comes
ENSOCUG00000010138	POLR1A	100	66.802	ENSIPUG00000013174	polr1a	100	65.761	Ictalurus_punctatus
ENSOCUG00000010138	POLR1A	100	87.872	ENSSTOG00000012580	POLR1A	100	87.580	Ictidomys_tridecemlineatus
ENSOCUG00000010138	POLR1A	100	89.697	ENSJJAG00000013113	Polr1a	100	89.523	Jaculus_jaculus
ENSOCUG00000010138	POLR1A	100	65.967	ENSKMAG00000007399	polr1a	100	65.559	Kryptolebias_marmoratus
ENSOCUG00000010138	POLR1A	95	68.248	ENSLBEG00000015401	polr1a	99	67.221	Labrus_bergylta
ENSOCUG00000010138	POLR1A	53	76.605	ENSLACG00000003218	polr1a	100	76.605	Latimeria_chalumnae
ENSOCUG00000010138	POLR1A	100	71.180	ENSLOCG00000010881	polr1a	100	69.817	Lepisosteus_oculatus
ENSOCUG00000010138	POLR1A	100	88.812	ENSLAFG00000014948	POLR1A	100	88.870	Loxodonta_africana
ENSOCUG00000010138	POLR1A	100	91.110	ENSMFAG00000046097	POLR1A	100	91.110	Macaca_fascicularis
ENSOCUG00000010138	POLR1A	100	90.994	ENSMMUG00000015815	POLR1A	100	90.994	Macaca_mulatta
ENSOCUG00000010138	POLR1A	100	91.110	ENSMNEG00000043313	POLR1A	100	91.110	Macaca_nemestrina
ENSOCUG00000010138	POLR1A	100	90.529	ENSMLEG00000042428	POLR1A	100	90.529	Mandrillus_leucophaeus
ENSOCUG00000010138	POLR1A	100	65.756	ENSMAMG00000016565	polr1a	100	65.469	Mastacembelus_armatus
ENSOCUG00000010138	POLR1A	100	66.570	ENSMZEG00005004915	polr1a	100	65.495	Maylandia_zebra
ENSOCUG00000010138	POLR1A	99	69.540	ENSMGAG00000013111	POLR1A	99	69.861	Meleagris_gallopavo
ENSOCUG00000010138	POLR1A	92	89.340	ENSMAUG00000008497	Polr1a	100	89.290	Mesocricetus_auratus
ENSOCUG00000010138	POLR1A	100	91.463	ENSMICG00000000757	POLR1A	100	91.173	Microcebus_murinus
ENSOCUG00000010138	POLR1A	100	89.315	ENSMOCG00000000122	Polr1a	100	89.199	Microtus_ochrogaster
ENSOCUG00000010138	POLR1A	100	65.405	ENSMMOG00000010216	polr1a	100	65.521	Mola_mola
ENSOCUG00000010138	POLR1A	100	75.906	ENSMODG00000009335	POLR1A	100	75.618	Monodelphis_domestica
ENSOCUG00000010138	POLR1A	100	65.563	ENSMALG00000013363	polr1a	100	64.503	Monopterus_albus
ENSOCUG00000010138	POLR1A	100	87.282	MGP_CAROLIEiJ_G0028494	Polr1a	100	87.166	Mus_caroli
ENSOCUG00000010138	POLR1A	100	87.631	ENSMUSG00000049553	Polr1a	100	87.515	Mus_musculus
ENSOCUG00000010138	POLR1A	100	87.907	MGP_PahariEiJ_G0022230	Polr1a	100	87.791	Mus_pahari
ENSOCUG00000010138	POLR1A	100	85.959	MGP_SPRETEiJ_G0029499	Polr1a	100	86.431	Mus_spretus
ENSOCUG00000010138	POLR1A	100	90.122	ENSMPUG00000009135	POLR1A	100	89.948	Mustela_putorius_furo
ENSOCUG00000010138	POLR1A	100	89.017	ENSMLUG00000015723	POLR1A	100	88.844	Myotis_lucifugus
ENSOCUG00000010138	POLR1A	100	89.076	ENSNGAG00000017907	Polr1a	100	89.082	Nannospalax_galili
ENSOCUG00000010138	POLR1A	100	66.570	ENSNBRG00000000519	polr1a	100	65.611	Neolamprologus_brichardi
ENSOCUG00000010138	POLR1A	100	88.722	ENSNLEG00000002264	POLR1A	100	88.722	Nomascus_leucogenys
ENSOCUG00000010138	POLR1A	75	93.701	ENSMEUG00000011665	-	75	93.701	Notamacropus_eugenii
ENSOCUG00000010138	POLR1A	99	86.887	ENSOPRG00000008269	POLR1A	100	86.828	Ochotona_princeps
ENSOCUG00000010138	POLR1A	100	90.443	ENSODEG00000003542	POLR1A	100	90.268	Octodon_degus
ENSOCUG00000010138	POLR1A	100	66.589	ENSONIG00000015895	polr1a	100	65.573	Oreochromis_niloticus
ENSOCUG00000010138	POLR1A	100	66.105	ENSORLG00000008753	polr1a	99	65.910	Oryzias_latipes
ENSOCUG00000010138	POLR1A	100	64.419	ENSORLG00020020726	polr1a	99	64.107	Oryzias_latipes_hni
ENSOCUG00000010138	POLR1A	100	61.838	ENSORLG00015016071	polr1a	99	61.874	Oryzias_latipes_hsok
ENSOCUG00000010138	POLR1A	100	90.296	ENSOGAG00000004031	POLR1A	100	90.296	Otolemur_garnettii
ENSOCUG00000010138	POLR1A	100	88.895	ENSOARG00000020601	POLR1A	100	88.986	Ovis_aries
ENSOCUG00000010138	POLR1A	100	90.587	ENSPPAG00000042450	POLR1A	100	90.587	Pan_paniscus
ENSOCUG00000010138	POLR1A	100	90.296	ENSPPRG00000006702	POLR1A	100	90.122	Panthera_pardus
ENSOCUG00000010138	POLR1A	100	89.693	ENSPTIG00000018783	POLR1A	100	89.519	Panthera_tigris_altaica
ENSOCUG00000010138	POLR1A	100	90.529	ENSPTRG00000012147	POLR1A	100	90.529	Pan_troglodytes
ENSOCUG00000010138	POLR1A	100	90.994	ENSPANG00000025908	POLR1A	100	90.994	Papio_anubis
ENSOCUG00000010138	POLR1A	94	75.000	ENSPKIG00000005468	polr1a	99	75.000	Paramormyrops_kingsleyae
ENSOCUG00000010138	POLR1A	63	72.525	ENSPSIG00000009321	-	99	72.643	Pelodiscus_sinensis
ENSOCUG00000010138	POLR1A	55	68.128	ENSPMGG00000009718	polr1a	95	68.128	Periophthalmus_magnuspinnatus
ENSOCUG00000010138	POLR1A	100	89.489	ENSPEMG00000022224	Polr1a	100	89.779	Peromyscus_maniculatus_bairdii
ENSOCUG00000010138	POLR1A	95	79.853	ENSPCIG00000004222	POLR1A	99	79.853	Phascolarctos_cinereus
ENSOCUG00000010138	POLR1A	100	64.808	ENSPFOG00000005025	polr1a	100	64.808	Poecilia_formosa
ENSOCUG00000010138	POLR1A	100	65.192	ENSPLAG00000021389	polr1a	100	65.192	Poecilia_latipinna
ENSOCUG00000010138	POLR1A	100	63.436	ENSPMEG00000006463	polr1a	100	63.573	Poecilia_mexicana
ENSOCUG00000010138	POLR1A	100	65.081	ENSPREG00000002389	polr1a	100	65.081	Poecilia_reticulata
ENSOCUG00000010138	POLR1A	100	90.471	ENSPPYG00000012217	POLR1A	100	90.471	Pongo_abelii
ENSOCUG00000010138	POLR1A	92	96.000	ENSPCAG00000011582	POLR1A	92	96.000	Procavia_capensis
ENSOCUG00000010138	POLR1A	100	91.231	ENSPCOG00000026987	POLR1A	100	90.883	Propithecus_coquereli
ENSOCUG00000010138	POLR1A	95	90.074	ENSPVAG00000012674	POLR1A	95	89.753	Pteropus_vampyrus
ENSOCUG00000010138	POLR1A	100	66.570	ENSPNYG00000000026	polr1a	100	65.438	Pundamilia_nyererei
ENSOCUG00000010138	POLR1A	100	67.712	ENSPNAG00000019223	polr1a	99	69.622	Pygocentrus_nattereri
ENSOCUG00000010138	POLR1A	100	88.837	ENSRNOG00000009545	Polr1a	100	89.024	Rattus_norvegicus
ENSOCUG00000010138	POLR1A	100	90.413	ENSRBIG00000028335	POLR1A	100	90.413	Rhinopithecus_bieti
ENSOCUG00000010138	POLR1A	100	90.354	ENSRROG00000031473	POLR1A	100	90.354	Rhinopithecus_roxellana
ENSOCUG00000010138	POLR1A	99	37.029	YOR341W	RPA190	99	37.041	Saccharomyces_cerevisiae
ENSOCUG00000010138	POLR1A	100	89.483	ENSSBOG00000030262	POLR1A	100	89.483	Saimiri_boliviensis_boliviensis
ENSOCUG00000010138	POLR1A	100	73.660	ENSSHAG00000014739	POLR1A	100	72.219	Sarcophilus_harrisii
ENSOCUG00000010138	POLR1A	100	68.837	ENSSFOG00015019716	polr1a	100	68.743	Scleropages_formosus
ENSOCUG00000010138	POLR1A	100	66.241	ENSSMAG00000014342	polr1a	100	65.683	Scophthalmus_maximus
ENSOCUG00000010138	POLR1A	100	67.093	ENSSDUG00000014631	polr1a	100	65.997	Seriola_dumerili
ENSOCUG00000010138	POLR1A	100	64.994	ENSSLDG00000024095	polr1a	100	63.919	Seriola_lalandi_dorsalis
ENSOCUG00000010138	POLR1A	75	97.872	ENSSARG00000003136	-	76	97.872	Sorex_araneus
ENSOCUG00000010138	POLR1A	95	77.949	ENSSPUG00000004215	POLR1A	98	77.949	Sphenodon_punctatus
ENSOCUG00000010138	POLR1A	64	72.109	ENSSPAG00000016341	polr1a	94	72.109	Stegastes_partitus
ENSOCUG00000010138	POLR1A	83	91.170	ENSSSCG00000008226	POLR1A	99	91.145	Sus_scrofa
ENSOCUG00000010138	POLR1A	99	70.924	ENSTGUG00000010704	POLR1A	100	70.554	Taeniopygia_guttata
ENSOCUG00000010138	POLR1A	100	63.626	ENSTRUG00000002210	polr1a	99	63.097	Takifugu_rubripes
ENSOCUG00000010138	POLR1A	100	59.804	ENSTNIG00000010116	polr1a	100	59.517	Tetraodon_nigroviridis
ENSOCUG00000010138	POLR1A	74	96.460	ENSTBEG00000008646	POLR1A	74	96.460	Tupaia_belangeri
ENSOCUG00000010138	POLR1A	100	85.174	ENSTTRG00000008597	POLR1A	100	85.706	Tursiops_truncatus
ENSOCUG00000010138	POLR1A	69	90.203	ENSUAMG00000012158	-	94	89.949	Ursus_americanus
ENSOCUG00000010138	POLR1A	100	89.948	ENSUMAG00000006700	POLR1A	100	89.773	Ursus_maritimus
ENSOCUG00000010138	POLR1A	100	90.000	ENSVVUG00000001245	POLR1A	100	90.058	Vulpes_vulpes
ENSOCUG00000010138	POLR1A	100	68.561	ENSXETG00000001952	polr1a	100	70.098	Xenopus_tropicalis
ENSOCUG00000010138	POLR1A	100	65.407	ENSXMAG00000004032	polr1a	100	65.445	Xiphophorus_maculatus