EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSOCUG00000010213 (Gene tree)
Gene ID
100341564
Gene Symbol
UPF3B
Alias
-
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Oryctolagus_cuniculus
Status
putative
Strand
Minus strand
Length
15863 bases
Position
chrX:68542245-68558107
Accession
100341564
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOCUP00000008801Smg4_UPF3PF03467.154.1e-5411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOCUT00000010210UPF3B-2011880XM_002720125ENSOCUP00000008801483 (aa)XP_002720171G1SYU5
Gene Model
Click here to download ENSOCUG00000010213's gene model file
Pathways
Pathway IDPathway NameSource
ocu03013RNA transportKEGG
ocu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000010213's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOCUG00000010213UPF3B10095.031ENSG00000125351UPF3B10095.031Homo_sapiens
ENSOCUG00000010213UPF3B8948.198ENSG00000169062UPF3A8847.609Homo_sapiens
ENSOCUG00000010213UPF3B9656.211ENSAPOG00000012775upf3b9656.000Acanthochromis_polyacanthus
ENSOCUG00000010213UPF3B9541.614ENSAMEG00000004259UPF3A9541.164Ailuropoda_melanoleuca
ENSOCUG00000010213UPF3B10095.445ENSAMEG00000000163UPF3B10095.445Ailuropoda_melanoleuca
ENSOCUG00000010213UPF3B9451.386ENSACIG00000013582upf3b9451.392Amphilophus_citrinellus
ENSOCUG00000010213UPF3B9654.968ENSAOCG00000000706upf3b9655.085Amphiprion_ocellaris
ENSOCUG00000010213UPF3B10054.949ENSAPEG00000005545upf3b9955.354Amphiprion_percula
ENSOCUG00000010213UPF3B9457.112ENSATEG00000018742upf3b9457.849Anabas_testudineus
ENSOCUG00000010213UPF3B8650.353ENSACAG00000001540UPF3A9450.588Anolis_carolinensis
ENSOCUG00000010213UPF3B9167.188ENSACAG00000003625UPF3B9964.622Anolis_carolinensis
ENSOCUG00000010213UPF3B10095.031ENSANAG00000021894-10096.654Aotus_nancymaae
ENSOCUG00000010213UPF3B5670.260ENSANAG00000033169-9369.517Aotus_nancymaae
ENSOCUG00000010213UPF3B10086.749ENSANAG00000025598-10092.035Aotus_nancymaae
ENSOCUG00000010213UPF3B9654.968ENSACLG00000001649upf3b9755.858Astatotilapia_calliptera
ENSOCUG00000010213UPF3B5659.717ENSAMXG00000000199upf3b8857.801Astyanax_mexicanus
ENSOCUG00000010213UPF3B6796.654ENSBTAG00000035615UPF3B10096.654Bos_taurus
ENSOCUG00000010213UPF3B10094.824ENSCJAG00000004975UPF3B10096.283Callithrix_jacchus
ENSOCUG00000010213UPF3B10095.238ENSCAFG00000018426UPF3B10095.238Canis_familiaris
ENSOCUG00000010213UPF3B10090.269ENSCAFG00020004074UPF3B10094.161Canis_lupus_dingo
ENSOCUG00000010213UPF3B9894.492ENSCHIG00000018011-10096.283Capra_hircus
ENSOCUG00000010213UPF3B10094.617ENSCHIG00000000247-10094.617Capra_hircus
ENSOCUG00000010213UPF3B9163.014ENSCHIG00000011454-9860.345Capra_hircus
ENSOCUG00000010213UPF3B10091.925ENSTSYG00000014690UPF3B10094.470Carlito_syrichta
ENSOCUG00000010213UPF3B9957.113ENSCCAG00000029813-8768.889Cebus_capucinus
ENSOCUG00000010213UPF3B7073.239ENSCCAG00000021964-10073.239Cebus_capucinus
ENSOCUG00000010213UPF3B10095.031ENSCATG00000017506UPF3B10097.026Cercocebus_atys
ENSOCUG00000010213UPF3B10090.062ENSCLAG00000003260UPF3B10090.062Chinchilla_lanigera
ENSOCUG00000010213UPF3B10095.031ENSCSAG00000018348UPF3B10095.031Chlorocebus_sabaeus
ENSOCUG00000010213UPF3B9963.061ENSCPBG00000020685UPF3B9963.061Chrysemys_picta_bellii
ENSOCUG00000010213UPF3B7097.026ENSCANG00000029220UPF3B10097.026Colobus_angolensis_palliatus
ENSOCUG00000010213UPF3B7580.769ENSCGRG00001013643-9478.056Cricetulus_griseus_chok1gshd
ENSOCUG00000010213UPF3B10082.062ENSCGRG00001006858-10082.268Cricetulus_griseus_chok1gshd
ENSOCUG00000010213UPF3B8983.603ENSCGRG00000007627Upf3b10083.834Cricetulus_griseus_crigri
ENSOCUG00000010213UPF3B9355.195ENSCSEG00000002046upf3b9055.844Cynoglossus_semilaevis
ENSOCUG00000010213UPF3B9751.639ENSCVAG00000005030upf3b10048.988Cyprinodon_variegatus
ENSOCUG00000010213UPF3B9356.129ENSDARG00000000489upf3b9755.052Danio_rerio
ENSOCUG00000010213UPF3B10093.789ENSDNOG00000008665UPF3B10093.789Dasypus_novemcinctus
ENSOCUG00000010213UPF3B10085.507ENSDORG00000006077Upf3b10085.507Dipodomys_ordii
ENSOCUG00000010213UPF3B8850.461ENSEASG00005021884UPF3A8544.111Equus_asinus_asinus
ENSOCUG00000010213UPF3B9990.871ENSEASG00005012919UPF3B10096.324Equus_asinus_asinus
ENSOCUG00000010213UPF3B9990.871ENSECAG00000016947UPF3B10096.324Equus_caballus
ENSOCUG00000010213UPF3B8850.691ENSECAG00000017141UPF3A8743.468Equus_caballus
ENSOCUG00000010213UPF3B10049.038ENSELUG00000020389upf3b10051.751Esox_lucius
ENSOCUG00000010213UPF3B9147.198ENSFCAG00000014602UPF3A8942.609Felis_catus
ENSOCUG00000010213UPF3B10094.227ENSFCAG00000004388UPF3B10094.845Felis_catus
ENSOCUG00000010213UPF3B9965.805ENSFALG00000001569UPF3B9965.805Ficedula_albicollis
ENSOCUG00000010213UPF3B10090.683ENSFDAG00000018869UPF3B10090.683Fukomys_damarensis
ENSOCUG00000010213UPF3B9352.700ENSFHEG00000017895upf3b9352.391Fundulus_heteroclitus
ENSOCUG00000010213UPF3B9354.095ENSGMOG00000001621upf3b9354.741Gadus_morhua
ENSOCUG00000010213UPF3B9168.527ENSGALG00000008618UPF3B9966.667Gallus_gallus
ENSOCUG00000010213UPF3B9652.891ENSGAFG00000000829upf3b9753.390Gambusia_affinis
ENSOCUG00000010213UPF3B9253.696ENSGACG00000017435upf3b9452.052Gasterosteus_aculeatus
ENSOCUG00000010213UPF3B9965.510ENSGAGG00000001219UPF3B9965.510Gopherus_agassizii
ENSOCUG00000010213UPF3B10095.031ENSGGOG00000023995UPF3B10097.026Gorilla_gorilla
ENSOCUG00000010213UPF3B8840.503ENSGGOG00000041219-9037.875Gorilla_gorilla
ENSOCUG00000010213UPF3B8840.826ENSGGOG00000043074-8537.875Gorilla_gorilla
ENSOCUG00000010213UPF3B8948.198ENSGGOG00000015428UPF3A8847.619Gorilla_gorilla
ENSOCUG00000010213UPF3B9654.968ENSHBUG00000017393upf3b9755.858Haplochromis_burtoni
ENSOCUG00000010213UPF3B8682.082ENSHGLG00000011189-9582.082Heterocephalus_glaber_female
ENSOCUG00000010213UPF3B10090.890ENSHGLG00000019582-10090.890Heterocephalus_glaber_female
ENSOCUG00000010213UPF3B8681.840ENSHGLG00100001889-9581.356Heterocephalus_glaber_male
ENSOCUG00000010213UPF3B10087.578ENSHGLG00100002042-10088.199Heterocephalus_glaber_male
ENSOCUG00000010213UPF3B10052.727ENSHCOG00000017004upf3b10052.525Hippocampus_comes
ENSOCUG00000010213UPF3B10053.939ENSIPUG00000019249upf3b10055.152Ictalurus_punctatus
ENSOCUG00000010213UPF3B10090.476ENSSTOG00000001101UPF3B10090.476Ictidomys_tridecemlineatus
ENSOCUG00000010213UPF3B10087.629ENSJJAG00000000053Upf3b10087.835Jaculus_jaculus
ENSOCUG00000010213UPF3B9652.954ENSKMAG00000020300upf3b9755.042Kryptolebias_marmoratus
ENSOCUG00000010213UPF3B6162.000ENSLBEG00000028689upf3b5962.000Labrus_bergylta
ENSOCUG00000010213UPF3B9060.265ENSLACG00000008691UPF3B10057.171Latimeria_chalumnae
ENSOCUG00000010213UPF3B6164.094ENSLOCG00000015238upf3b9955.031Lepisosteus_oculatus
ENSOCUG00000010213UPF3B9050.773ENSLOCG00000002665upf3a9147.228Lepisosteus_oculatus
ENSOCUG00000010213UPF3B10090.269ENSLAFG00000001267UPF3B10090.269Loxodonta_africana
ENSOCUG00000010213UPF3B8543.269ENSLAFG00000023358UPF3A9942.032Loxodonta_africana
ENSOCUG00000010213UPF3B10094.824ENSMFAG00000045414UPF3B10097.026Macaca_fascicularis
ENSOCUG00000010213UPF3B10094.824ENSMMUG00000020222UPF3B10097.026Macaca_mulatta
ENSOCUG00000010213UPF3B10094.824ENSMNEG00000039794UPF3B10097.026Macaca_nemestrina
ENSOCUG00000010213UPF3B10095.031ENSMLEG00000010999UPF3B10097.026Mandrillus_leucophaeus
ENSOCUG00000010213UPF3B9655.042ENSMZEG00005007871upf3b9755.925Maylandia_zebra
ENSOCUG00000010213UPF3B8649.188ENSMGAG00000014837UPF3A9649.048Meleagris_gallopavo
ENSOCUG00000010213UPF3B8166.085ENSMGAG00000007728UPF3B9967.332Meleagris_gallopavo
ENSOCUG00000010213UPF3B10085.361ENSMAUG00000008705Upf3b10085.567Mesocricetus_auratus
ENSOCUG00000010213UPF3B7095.926ENSMICG00000001743UPF3B10095.926Microcebus_murinus
ENSOCUG00000010213UPF3B10087.010ENSMOCG00000017893Upf3b10087.216Microtus_ochrogaster
ENSOCUG00000010213UPF3B8654.930ENSMMOG00000004183upf3b9654.202Mola_mola
ENSOCUG00000010213UPF3B8973.059ENSMODG00000010232UPF3B9972.831Monodelphis_domestica
ENSOCUG00000010213UPF3B8851.242ENSMODG00000003159UPF3A9650.564Monodelphis_domestica
ENSOCUG00000010213UPF3B6064.407ENSMALG00000008042upf3b9853.593Monopterus_albus
ENSOCUG00000010213UPF3B10083.505MGP_CAROLIEiJ_G0032999Upf3b10083.711Mus_caroli
ENSOCUG00000010213UPF3B10084.124ENSMUSG00000036572Upf3b10084.330Mus_musculus
ENSOCUG00000010213UPF3B10083.299MGP_PahariEiJ_G0031543Upf3b10083.505Mus_pahari
ENSOCUG00000010213UPF3B10084.124MGP_SPRETEiJ_G0034152Upf3b10084.330Mus_spretus
ENSOCUG00000010213UPF3B9891.949ENSMPUG00000001531UPF3B10091.949Mustela_putorius_furo
ENSOCUG00000010213UPF3B10091.718ENSMLUG00000010821UPF3B10091.718Myotis_lucifugus
ENSOCUG00000010213UPF3B10082.268ENSNGAG00000008231Upf3b10083.505Nannospalax_galili
ENSOCUG00000010213UPF3B8549.289ENSNLEG00000007563UPF3A8544.191Nomascus_leucogenys
ENSOCUG00000010213UPF3B9795.106ENSNLEG00000014897UPF3B10094.824Nomascus_leucogenys
ENSOCUG00000010213UPF3B6483.871ENSMEUG00000015615UPF3B8183.974Notamacropus_eugenii
ENSOCUG00000010213UPF3B10084.886ENSODEG00000002186-10084.679Octodon_degus
ENSOCUG00000010213UPF3B10055.556ENSONIG00000002536upf3b10056.452Oreochromis_niloticus
ENSOCUG00000010213UPF3B8451.415ENSORLG00000010911upf3a8245.863Oryzias_latipes
ENSOCUG00000010213UPF3B8458.313ENSORLG00000001026upf3b9754.489Oryzias_latipes
ENSOCUG00000010213UPF3B8457.554ENSORLG00020003758upf3b9754.054Oryzias_latipes_hni
ENSOCUG00000010213UPF3B8450.000ENSORLG00020014317upf3a8250.119Oryzias_latipes_hni
ENSOCUG00000010213UPF3B8756.512ENSORLG00015012954upf3b9754.280Oryzias_latipes_hsok
ENSOCUG00000010213UPF3B8757.110ENSOMEG00000014736upf3b9754.489Oryzias_melastigma
ENSOCUG00000010213UPF3B10091.511ENSOGAG00000004643-10091.511Otolemur_garnettii
ENSOCUG00000010213UPF3B9878.013ENSOGAG00000033003-10078.436Otolemur_garnettii
ENSOCUG00000010213UPF3B9067.890ENSOARG00000007869-9964.989Ovis_aries
ENSOCUG00000010213UPF3B10094.033ENSOARG00000016051-10094.033Ovis_aries
ENSOCUG00000010213UPF3B10095.031ENSPPAG00000040390UPF3B10097.026Pan_paniscus
ENSOCUG00000010213UPF3B8947.748ENSPPAG00000042267UPF3A8947.391Pan_paniscus
ENSOCUG00000010213UPF3B10095.238ENSPPRG00000023536UPF3B10095.238Panthera_pardus
ENSOCUG00000010213UPF3B9147.414ENSPPRG00000025062UPF3A8942.140Panthera_pardus
ENSOCUG00000010213UPF3B10090.744ENSPTIG00000015264UPF3B10097.026Panthera_tigris_altaica
ENSOCUG00000010213UPF3B8839.954ENSPTRG00000051640-9034.339Pan_troglodytes
ENSOCUG00000010213UPF3B10095.031ENSPTRG00000022228UPF3B10097.026Pan_troglodytes
ENSOCUG00000010213UPF3B10095.031ENSPANG00000000900UPF3B10097.026Papio_anubis
ENSOCUG00000010213UPF3B10052.727ENSPKIG00000019226upf3b9261.783Paramormyrops_kingsleyae
ENSOCUG00000010213UPF3B8551.945ENSPSIG00000007468UPF3A9850.000Pelodiscus_sinensis
ENSOCUG00000010213UPF3B5670.182ENSPSIG00000005833UPF3B9270.221Pelodiscus_sinensis
ENSOCUG00000010213UPF3B5666.667ENSPMGG00000016067upf3b9466.423Periophthalmus_magnuspinnatus
ENSOCUG00000010213UPF3B10087.654ENSPEMG00000012352Upf3b10087.860Peromyscus_maniculatus_bairdii
ENSOCUG00000010213UPF3B9368.640ENSPCIG00000028914UPF3B9666.314Phascolarctos_cinereus
ENSOCUG00000010213UPF3B7256.769ENSPCIG00000019590-7363.842Phascolarctos_cinereus
ENSOCUG00000010213UPF3B9654.390ENSPLAG00000005105upf3b9754.603Poecilia_latipinna
ENSOCUG00000010213UPF3B9654.390ENSPLAG00000019922upf3b9754.603Poecilia_latipinna
ENSOCUG00000010213UPF3B5068.354ENSPLAG00000011960upf3a8350.711Poecilia_latipinna
ENSOCUG00000010213UPF3B9654.604ENSPMEG00000023532upf3b9755.085Poecilia_mexicana
ENSOCUG00000010213UPF3B8947.072ENSPPYG00000005536UPF3A8846.304Pongo_abelii
ENSOCUG00000010213UPF3B6997.163ENSPPYG00000020675-10097.163Pongo_abelii
ENSOCUG00000010213UPF3B10091.718ENSPCAG00000009464UPF3B10091.718Procavia_capensis
ENSOCUG00000010213UPF3B10095.661ENSPCOG00000021960UPF3B10096.667Propithecus_coquereli
ENSOCUG00000010213UPF3B10081.159ENSPVAG00000014075UPF3B10081.159Pteropus_vampyrus
ENSOCUG00000010213UPF3B8745.351ENSPVAG00000005656UPF3A8938.689Pteropus_vampyrus
ENSOCUG00000010213UPF3B9655.414ENSPNYG00000009846upf3b9755.882Pundamilia_nyererei
ENSOCUG00000010213UPF3B10054.291ENSPNAG00000021528upf3b10065.934Pygocentrus_nattereri
ENSOCUG00000010213UPF3B10087.010ENSRNOG00000039994Upf3b10087.216Rattus_norvegicus
ENSOCUG00000010213UPF3B8293.199ENSRBIG00000037219UPF3B10093.199Rhinopithecus_bieti
ENSOCUG00000010213UPF3B10095.031ENSRROG00000041031UPF3B10097.026Rhinopithecus_roxellana
ENSOCUG00000010213UPF3B7646.053ENSSBOG00000029989UPF3A8041.379Saimiri_boliviensis_boliviensis
ENSOCUG00000010213UPF3B10094.410ENSSBOG00000019740UPF3B10096.283Saimiri_boliviensis_boliviensis
ENSOCUG00000010213UPF3B8872.854ENSSHAG00000008634UPF3B9967.629Sarcophilus_harrisii
ENSOCUG00000010213UPF3B8850.452ENSSHAG00000009895UPF3A9849.774Sarcophilus_harrisii
ENSOCUG00000010213UPF3B10056.122ENSSFOG00015005614upf3b10057.637Scleropages_formosus
ENSOCUG00000010213UPF3B9354.077ENSSMAG00000012913upf3b8467.279Scophthalmus_maximus
ENSOCUG00000010213UPF3B8442.891ENSSDUG00000009680upf3a5776.344Seriola_dumerili
ENSOCUG00000010213UPF3B8651.643ENSSDUG00000005682upf3b9750.208Seriola_dumerili
ENSOCUG00000010213UPF3B9652.842ENSSLDG00000003130upf3b9750.625Seriola_lalandi_dorsalis
ENSOCUG00000010213UPF3B8237.221ENSSARG00000007262UPF3A9235.381Sorex_araneus
ENSOCUG00000010213UPF3B8985.714ENSSARG00000004147UPF3B10085.714Sorex_araneus
ENSOCUG00000010213UPF3B9963.232ENSSPUG00000013082UPF3B9961.895Sphenodon_punctatus
ENSOCUG00000010213UPF3B9654.430ENSSPAG00000009989upf3b9755.324Stegastes_partitus
ENSOCUG00000010213UPF3B10092.340ENSSSCG00000012617UPF3B10092.340Sus_scrofa
ENSOCUG00000010213UPF3B8452.857ENSTGUG00000009493UPF3A9952.143Taeniopygia_guttata
ENSOCUG00000010213UPF3B8968.409ENSTGUG00000003413UPF3B9968.636Taeniopygia_guttata
ENSOCUG00000010213UPF3B8755.607ENSTRUG00000010645upf3b9953.611Takifugu_rubripes
ENSOCUG00000010213UPF3B9452.146ENSTNIG00000015763upf3b9546.639Tetraodon_nigroviridis
ENSOCUG00000010213UPF3B10078.882ENSTBEG00000003229UPF3B10078.882Tupaia_belangeri
ENSOCUG00000010213UPF3B7645.692ENSTTRG00000015414UPF3A7338.830Tursiops_truncatus
ENSOCUG00000010213UPF3B10088.866ENSUAMG00000024565UPF3B10093.525Ursus_americanus
ENSOCUG00000010213UPF3B9384.696ENSUMAG00000002150UPF3B9984.067Ursus_maritimus
ENSOCUG00000010213UPF3B8595.610ENSVPAG00000009971UPF3B10095.610Vicugna_pacos
ENSOCUG00000010213UPF3B10090.269ENSVVUG00000011594UPF3B10094.017Vulpes_vulpes
ENSOCUG00000010213UPF3B8444.208ENSXETG00000002572upf3a9044.125Xenopus_tropicalis
ENSOCUG00000010213UPF3B8755.196ENSXETG00000007440upf3b7777.401Xenopus_tropicalis
ENSOCUG00000010213UPF3B9851.250ENSXCOG00000016586upf3b9765.877Xiphophorus_couchianus
ENSOCUG00000010213UPF3B9453.930ENSXMAG00000013680upf3b9454.585Xiphophorus_maculatus

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