EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000010919 (Gene tree)
Gene ID: 100350595
Gene Symbol: PABPC5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrX:83297816-83298964
Accession: 100350595
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000009396	RRM_5	PF13893.6	6.9e-12	1	2
ENSOCUP00000009396	RRM_5	PF13893.6	6.9e-12	2	2
ENSOCUP00000009396	RRM_1	PF00076.22	1.3e-78	1	4
ENSOCUP00000009396	RRM_1	PF00076.22	1.3e-78	2	4
ENSOCUP00000009396	RRM_1	PF00076.22	1.3e-78	3	4
ENSOCUP00000009396	RRM_1	PF00076.22	1.3e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000010920	PABPC5-201	1149	XM_002720153	ENSOCUP00000009396	382 (aa)	XP_002720199	G1T092

Gene Model

Click here to download ENSOCUG00000010919's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03013	RNA transport	KEGG
ocu03015	mRNA surveillance pathway	KEGG
ocu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000010919's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000010919	PABPC5	97	64.420	ENSOCUG00000023935	-	58	65.449
ENSOCUG00000010919	PABPC5	95	66.942	ENSOCUG00000000562	PABPC4	52	67.135
ENSOCUG00000010919	PABPC5	54	40.000	ENSOCUG00000013043	MYEF2	52	40.000
ENSOCUG00000010919	PABPC5	94	35.802	ENSOCUG00000005891	ELAVL2	82	35.802
ENSOCUG00000010919	PABPC5	96	61.157	ENSOCUG00000003005	PABPC1L	58	61.236
ENSOCUG00000010919	PABPC5	64	31.073	ENSOCUG00000002353	-	57	30.994
ENSOCUG00000010919	PABPC5	93	59.694	ENSOCUG00000002565	-	98	59.375
ENSOCUG00000010919	PABPC5	97	64.690	ENSOCUG00000004354	-	58	65.730
ENSOCUG00000010919	PABPC5	94	30.055	ENSOCUG00000015871	ELAVL1	75	30.055

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000010919	PABPC5	99	97.900	ENSG00000174740	PABPC5	99	97.900	Homo_sapiens
ENSOCUG00000010919	PABPC5	99	97.113	ENSAMEG00000020114	PABPC5	100	97.113	Ailuropoda_melanoleuca
ENSOCUG00000010919	PABPC5	99	97.900	ENSANAG00000005063	PABPC5	99	97.900	Aotus_nancymaae
ENSOCUG00000010919	PABPC5	100	96.597	ENSBTAG00000019942	PABPC5	100	96.597	Bos_taurus
ENSOCUG00000010919	PABPC5	99	97.375	ENSCJAG00000003665	PABPC5	99	97.375	Callithrix_jacchus
ENSOCUG00000010919	PABPC5	100	96.597	ENSCAFG00000017452	PABPC5	100	96.597	Canis_familiaris
ENSOCUG00000010919	PABPC5	100	96.597	ENSCHIG00000019004	PABPC5	100	96.597	Capra_hircus
ENSOCUG00000010919	PABPC5	100	97.382	ENSTSYG00000036351	PABPC5	100	97.382	Carlito_syrichta
ENSOCUG00000010919	PABPC5	99	88.021	ENSCAPG00000010714	PABPC5	100	88.021	Cavia_aperea
ENSOCUG00000010919	PABPC5	100	93.979	ENSCPOG00000002555	PABPC5	100	93.979	Cavia_porcellus
ENSOCUG00000010919	PABPC5	99	97.900	ENSCCAG00000032154	PABPC5	99	97.900	Cebus_capucinus
ENSOCUG00000010919	PABPC5	99	97.638	ENSCATG00000043083	PABPC5	99	97.638	Cercocebus_atys
ENSOCUG00000010919	PABPC5	100	95.288	ENSCLAG00000000647	PABPC5	100	95.288	Chinchilla_lanigera
ENSOCUG00000010919	PABPC5	99	97.638	ENSCSAG00000000065	PABPC5	99	97.638	Chlorocebus_sabaeus
ENSOCUG00000010919	PABPC5	99	97.638	ENSCANG00000011473	PABPC5	99	97.638	Colobus_angolensis_palliatus
ENSOCUG00000010919	PABPC5	100	93.717	ENSCGRG00000018699	Pabpc5	100	93.717	Cricetulus_griseus_crigri
ENSOCUG00000010919	PABPC5	100	78.851	ENSETEG00000011832	PABPC5	100	78.851	Echinops_telfairi
ENSOCUG00000010919	PABPC5	100	97.382	ENSEASG00005014396	PABPC5	100	97.382	Equus_asinus_asinus
ENSOCUG00000010919	PABPC5	100	97.382	ENSECAG00000003452	PABPC5	100	97.382	Equus_caballus
ENSOCUG00000010919	PABPC5	100	96.859	ENSFCAG00000004998	PABPC5	100	96.859	Felis_catus
ENSOCUG00000010919	PABPC5	100	96.597	ENSFDAG00000000126	PABPC5	100	96.597	Fukomys_damarensis
ENSOCUG00000010919	PABPC5	99	97.900	ENSGGOG00000007622	PABPC5	99	97.900	Gorilla_gorilla
ENSOCUG00000010919	PABPC5	95	97.248	ENSJJAG00000011960	Pabpc5	100	97.248	Jaculus_jaculus
ENSOCUG00000010919	PABPC5	99	97.638	ENSMFAG00000024561	PABPC5	99	97.638	Macaca_fascicularis
ENSOCUG00000010919	PABPC5	99	97.638	ENSMMUG00000011562	PABPC5	99	97.638	Macaca_mulatta
ENSOCUG00000010919	PABPC5	99	97.638	ENSMNEG00000037604	PABPC5	99	97.638	Macaca_nemestrina
ENSOCUG00000010919	PABPC5	99	97.638	ENSMLEG00000028318	PABPC5	99	97.638	Mandrillus_leucophaeus
ENSOCUG00000010919	PABPC5	100	96.335	ENSMICG00000041706	PABPC5	100	96.335	Microcebus_murinus
ENSOCUG00000010919	PABPC5	100	95.288	ENSMOCG00000001554	Pabpc5	100	95.288	Microtus_ochrogaster
ENSOCUG00000010919	PABPC5	99	93.947	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.947	Mus_caroli
ENSOCUG00000010919	PABPC5	99	94.474	ENSMUSG00000034732	Pabpc5	99	94.474	Mus_musculus
ENSOCUG00000010919	PABPC5	100	94.764	MGP_PahariEiJ_G0031908	Pabpc5	100	94.764	Mus_pahari
ENSOCUG00000010919	PABPC5	99	94.474	MGP_SPRETEiJ_G0034533	Pabpc5	99	94.474	Mus_spretus
ENSOCUG00000010919	PABPC5	100	96.073	ENSMPUG00000018465	PABPC5	100	96.073	Mustela_putorius_furo
ENSOCUG00000010919	PABPC5	100	95.550	ENSMLUG00000008244	PABPC5	100	95.550	Myotis_lucifugus
ENSOCUG00000010919	PABPC5	95	96.330	ENSNGAG00000004371	Pabpc5	100	96.330	Nannospalax_galili
ENSOCUG00000010919	PABPC5	99	97.900	ENSNLEG00000035086	PABPC5	99	97.900	Nomascus_leucogenys
ENSOCUG00000010919	PABPC5	98	99.548	ENSOPRG00000000856	PABPC5	100	99.548	Ochotona_princeps
ENSOCUG00000010919	PABPC5	100	96.335	ENSOGAG00000006882	PABPC5	100	96.335	Otolemur_garnettii
ENSOCUG00000010919	PABPC5	100	96.859	ENSOARG00000010260	PABPC5	100	96.859	Ovis_aries
ENSOCUG00000010919	PABPC5	99	97.638	ENSPPAG00000007378	PABPC5	99	97.638	Pan_paniscus
ENSOCUG00000010919	PABPC5	100	96.859	ENSPPRG00000010742	PABPC5	100	96.859	Panthera_pardus
ENSOCUG00000010919	PABPC5	100	96.859	ENSPTIG00000001480	PABPC5	100	96.859	Panthera_tigris_altaica
ENSOCUG00000010919	PABPC5	99	97.900	ENSPTRG00000022078	PABPC5	99	97.900	Pan_troglodytes
ENSOCUG00000010919	PABPC5	99	97.638	ENSPANG00000018282	PABPC5	99	97.638	Papio_anubis
ENSOCUG00000010919	PABPC5	100	94.503	ENSPEMG00000000171	Pabpc5	100	94.503	Peromyscus_maniculatus_bairdii
ENSOCUG00000010919	PABPC5	99	97.900	ENSPPYG00000020526	PABPC5	99	97.900	Pongo_abelii
ENSOCUG00000010919	PABPC5	99	97.455	ENSPCAG00000015577	PABPC5	100	97.455	Procavia_capensis
ENSOCUG00000010919	PABPC5	100	97.120	ENSPCOG00000000676	PABPC5	100	97.120	Propithecus_coquereli
ENSOCUG00000010919	PABPC5	100	97.120	ENSPVAG00000006465	PABPC5	100	97.120	Pteropus_vampyrus
ENSOCUG00000010919	PABPC5	100	94.503	ENSRNOG00000003354	Pabpc5	100	94.503	Rattus_norvegicus
ENSOCUG00000010919	PABPC5	99	97.638	ENSRBIG00000011760	PABPC5	99	97.638	Rhinopithecus_bieti
ENSOCUG00000010919	PABPC5	99	97.638	ENSRROG00000036708	PABPC5	99	97.638	Rhinopithecus_roxellana
ENSOCUG00000010919	PABPC5	99	97.638	ENSSBOG00000008658	PABPC5	99	97.638	Saimiri_boliviensis_boliviensis
ENSOCUG00000010919	PABPC5	100	93.979	ENSSARG00000014012	PABPC5	100	93.979	Sorex_araneus
ENSOCUG00000010919	PABPC5	100	96.597	ENSSSCG00000040194	PABPC5	100	96.597	Sus_scrofa
ENSOCUG00000010919	PABPC5	100	97.906	ENSTBEG00000016482	PABPC5	100	97.906	Tupaia_belangeri
ENSOCUG00000010919	PABPC5	100	96.597	ENSUAMG00000013627	PABPC5	100	96.597	Ursus_americanus
ENSOCUG00000010919	PABPC5	100	96.335	ENSUMAG00000023934	PABPC5	100	96.335	Ursus_maritimus
ENSOCUG00000010919	PABPC5	100	96.859	ENSVPAG00000001063	PABPC5	100	96.859	Vicugna_pacos
ENSOCUG00000010919	PABPC5	100	96.859	ENSVVUG00000013172	PABPC5	100	96.859	Vulpes_vulpes