EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOCUG00000011088 (Gene tree)
Gene ID
100346711
Gene Symbol
-
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Oryctolagus_cuniculus
Status
putative
Strand
Plus strand
Length
5927 bases
Position
chr9:9794223-9800149
Accession
100346711
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOCUP00000009539LSMPF01423.223e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOCUT00000011086-395XM_002713179ENSOCUP00000009539102 (aa)XP_002713225G1T0L1
Gene Model
Click here to download ENSOCUG00000011088's gene model file
Pathways
Pathway IDPathway NameSource
ocu03018RNA degradationKEGG
ocu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000011088's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOCUG00000011088-7434.667ENSOCUG00000029043LSM58234.667
ENSOCUG00000011088-10095.098ENSOCUG00000027653-10095.098
ENSOCUG00000011088-7731.707ENSOCUG00000022402SNRPD26931.707
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOCUG00000011088-10095.098ENSG00000170860LSM310095.098Homo_sapiens
ENSOCUG00000011088-10091.176ENSAPOG00000018947lsm310091.176Acanthochromis_polyacanthus
ENSOCUG00000011088-10095.098ENSAMEG00000009405LSM310095.098Ailuropoda_melanoleuca
ENSOCUG00000011088-10091.176ENSACIG00000004574lsm37191.176Amphilophus_citrinellus
ENSOCUG00000011088-10091.176ENSAOCG00000007658lsm310091.176Amphiprion_ocellaris
ENSOCUG00000011088-10091.176ENSAPEG00000018621lsm310091.176Amphiprion_percula
ENSOCUG00000011088-10091.176ENSATEG00000005153lsm310091.176Anabas_testudineus
ENSOCUG00000011088-88100.000ENSAPLG00000014499LSM395100.000Anas_platyrhynchos
ENSOCUG00000011088-10094.118ENSACAG00000013503LSM310094.118Anolis_carolinensis
ENSOCUG00000011088-10095.098ENSANAG00000034627LSM310095.098Aotus_nancymaae
ENSOCUG00000011088-10091.176ENSANAG00000002903-10091.176Aotus_nancymaae
ENSOCUG00000011088-9591.753ENSACLG00000001726-9491.753Astatotilapia_calliptera
ENSOCUG00000011088-10092.157ENSAMXG00000041214lsm310092.157Astyanax_mexicanus
ENSOCUG00000011088-9494.792ENSBTAG00000007363LSM310094.792Bos_taurus
ENSOCUG00000011088-10069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSOCUG00000011088-10093.137ENSCAFG00000001760LSM310093.137Canis_familiaris
ENSOCUG00000011088-10093.137ENSCAFG00020021584-10093.137Canis_lupus_dingo
ENSOCUG00000011088-10093.137ENSCAFG00020017266-10093.137Canis_lupus_dingo
ENSOCUG00000011088-10084.112ENSCAFG00020020950-10084.112Canis_lupus_dingo
ENSOCUG00000011088-10086.275ENSCAFG00020016680-10086.275Canis_lupus_dingo
ENSOCUG00000011088-10092.157ENSCAFG00020026452-10092.157Canis_lupus_dingo
ENSOCUG00000011088-10095.098ENSCHIG00000024650LSM310095.098Capra_hircus
ENSOCUG00000011088-9975.248ENSTSYG00000028528-9975.248Carlito_syrichta
ENSOCUG00000011088-10094.118ENSTSYG00000005204-10094.118Carlito_syrichta
ENSOCUG00000011088-9494.792ENSCAPG00000015760LSM310094.792Cavia_aperea
ENSOCUG00000011088-10095.098ENSCPOG00000034071LSM310095.098Cavia_porcellus
ENSOCUG00000011088-10095.098ENSCCAG00000036499-10095.098Cebus_capucinus
ENSOCUG00000011088-10095.098ENSCCAG00000019503-10095.098Cebus_capucinus
ENSOCUG00000011088-10076.471ENSCCAG00000032763-10076.471Cebus_capucinus
ENSOCUG00000011088-10095.098ENSCATG00000039421LSM310095.098Cercocebus_atys
ENSOCUG00000011088-9975.248ENSCATG00000031630-9975.248Cercocebus_atys
ENSOCUG00000011088-10095.098ENSCLAG00000015997LSM310095.098Chinchilla_lanigera
ENSOCUG00000011088-10090.196ENSCSAG00000019525-10090.196Chlorocebus_sabaeus
ENSOCUG00000011088-10094.118ENSCPBG00000014531LSM310094.118Chrysemys_picta_bellii
ENSOCUG00000011088-10079.808ENSCSAVG00000009542-10079.808Ciona_savignyi
ENSOCUG00000011088-10090.196ENSCANG00000018782-10090.196Colobus_angolensis_palliatus
ENSOCUG00000011088-10092.157ENSCANG00000038037-10092.157Colobus_angolensis_palliatus
ENSOCUG00000011088-10095.098ENSCANG00000033944-10095.098Colobus_angolensis_palliatus
ENSOCUG00000011088-10072.816ENSCGRG00001008639-10072.816Cricetulus_griseus_chok1gshd
ENSOCUG00000011088-9879.000ENSCGRG00001011396-10079.000Cricetulus_griseus_chok1gshd
ENSOCUG00000011088-10095.098ENSCGRG00001017598Lsm310095.098Cricetulus_griseus_chok1gshd
ENSOCUG00000011088-8883.333ENSCGRG00000012129-9483.333Cricetulus_griseus_crigri
ENSOCUG00000011088-10095.098ENSCGRG00000016159Lsm310095.098Cricetulus_griseus_crigri
ENSOCUG00000011088-10091.176ENSCSEG00000015071lsm37791.176Cynoglossus_semilaevis
ENSOCUG00000011088-10091.176ENSCVAG00000006933lsm310091.176Cyprinodon_variegatus
ENSOCUG00000011088-10092.157ENSDARG00000089663lsm310092.157Danio_rerio
ENSOCUG00000011088-10095.098ENSDNOG00000030808LSM310095.098Dasypus_novemcinctus
ENSOCUG00000011088-10095.098ENSDORG00000006894-10095.098Dipodomys_ordii
ENSOCUG00000011088-10075.490ENSDORG00000024490-10075.490Dipodomys_ordii
ENSOCUG00000011088-10075.728FBgn0051184LSm310075.728Drosophila_melanogaster
ENSOCUG00000011088-10095.098ENSETEG00000016207LSM310095.098Echinops_telfairi
ENSOCUG00000011088-10087.255ENSEBUG00000004943lsm310087.255Eptatretus_burgeri
ENSOCUG00000011088-10095.098ENSEASG00005015443LSM310095.098Equus_asinus_asinus
ENSOCUG00000011088-10095.098ENSECAG00000007803LSM310095.098Equus_caballus
ENSOCUG00000011088-10092.157ENSELUG00000018922lsm310092.157Esox_lucius
ENSOCUG00000011088-10095.098ENSFCAG00000038453LSM310095.098Felis_catus
ENSOCUG00000011088-10072.549ENSFCAG00000044344-10072.549Felis_catus
ENSOCUG00000011088-10094.118ENSFALG00000012644LSM310094.118Ficedula_albicollis
ENSOCUG00000011088-10095.098ENSFDAG00000011470LSM310095.098Fukomys_damarensis
ENSOCUG00000011088-10091.176ENSFHEG00000000876lsm310091.176Fundulus_heteroclitus
ENSOCUG00000011088-8896.667ENSGMOG00000011024lsm39596.667Gadus_morhua
ENSOCUG00000011088-10091.176ENSGAFG00000013965lsm310091.176Gambusia_affinis
ENSOCUG00000011088-10091.176ENSGACG00000003488lsm310091.176Gasterosteus_aculeatus
ENSOCUG00000011088-10094.118ENSGAGG00000025707LSM310094.118Gopherus_agassizii
ENSOCUG00000011088-10095.098ENSGGOG00000010006LSM310095.098Gorilla_gorilla
ENSOCUG00000011088-10091.176ENSHBUG00000022399lsm310091.176Haplochromis_burtoni
ENSOCUG00000011088-10095.098ENSHGLG00000000651LSM310095.098Heterocephalus_glaber_female
ENSOCUG00000011088-10075.490ENSHGLG00000015564-10075.490Heterocephalus_glaber_female
ENSOCUG00000011088-10095.098ENSHGLG00100011343LSM310095.098Heterocephalus_glaber_male
ENSOCUG00000011088-10075.490ENSHGLG00100010658-10075.490Heterocephalus_glaber_male
ENSOCUG00000011088-10091.176ENSHCOG00000013481lsm310091.176Hippocampus_comes
ENSOCUG00000011088-10093.137ENSIPUG00000009207lsm310093.137Ictalurus_punctatus
ENSOCUG00000011088-10095.098ENSSTOG00000006842LSM310095.098Ictidomys_tridecemlineatus
ENSOCUG00000011088-9970.588ENSJJAG00000018311-10070.588Jaculus_jaculus
ENSOCUG00000011088-10086.275ENSJJAG00000012797-10086.275Jaculus_jaculus
ENSOCUG00000011088-10095.098ENSJJAG00000017351Lsm310095.098Jaculus_jaculus
ENSOCUG00000011088-10091.176ENSKMAG00000015182lsm310091.176Kryptolebias_marmoratus
ENSOCUG00000011088-8897.778ENSLBEG00000021292lsm39297.778Labrus_bergylta
ENSOCUG00000011088-10093.137ENSLOCG00000013560lsm310093.137Lepisosteus_oculatus
ENSOCUG00000011088-10094.175ENSLAFG00000023308LSM310094.175Loxodonta_africana
ENSOCUG00000011088-10095.098ENSMFAG00000003185LSM310095.098Macaca_fascicularis
ENSOCUG00000011088-9574.227ENSMMUG00000002294-9474.227Macaca_mulatta
ENSOCUG00000011088-10074.510ENSMMUG00000043596-10074.510Macaca_mulatta
ENSOCUG00000011088-10095.098ENSMMUG00000023126LSM310095.098Macaca_mulatta
ENSOCUG00000011088-10095.098ENSMNEG00000043632LSM310095.098Macaca_nemestrina
ENSOCUG00000011088-9977.228ENSMNEG00000037686-9977.228Macaca_nemestrina
ENSOCUG00000011088-10095.098ENSMLEG00000036162LSM310095.098Mandrillus_leucophaeus
ENSOCUG00000011088-10091.176ENSMAMG00000012807lsm310091.176Mastacembelus_armatus
ENSOCUG00000011088-10091.176ENSMZEG00005016682lsm37391.176Maylandia_zebra
ENSOCUG00000011088-9494.792ENSMGAG00000007776LSM310094.792Meleagris_gallopavo
ENSOCUG00000011088-10094.118ENSMICG00000032361-10094.118Microcebus_murinus
ENSOCUG00000011088-10080.392ENSMICG00000027821-10080.392Microcebus_murinus
ENSOCUG00000011088-10095.098ENSMOCG00000014269Lsm310095.098Microtus_ochrogaster
ENSOCUG00000011088-10091.176ENSMMOG00000020715lsm310091.176Mola_mola
ENSOCUG00000011088-10094.118ENSMODG00000007275LSM310094.118Monodelphis_domestica
ENSOCUG00000011088-10091.176ENSMALG00000006485lsm310091.176Monopterus_albus
ENSOCUG00000011088-10095.098ENSMUSG00000034192Lsm310095.098Mus_musculus
ENSOCUG00000011088-10095.098MGP_PahariEiJ_G0022402Lsm310095.098Mus_pahari
ENSOCUG00000011088-10095.098MGP_SPRETEiJ_G0029681Lsm310095.098Mus_spretus
ENSOCUG00000011088-8387.059ENSMPUG00000017256-10087.059Mustela_putorius_furo
ENSOCUG00000011088-9784.848ENSMPUG00000019120-9784.848Mustela_putorius_furo
ENSOCUG00000011088-10095.098ENSMLUG00000010677LSM310095.098Myotis_lucifugus
ENSOCUG00000011088-10087.255ENSMLUG00000024700-10087.255Myotis_lucifugus
ENSOCUG00000011088-10095.098ENSNGAG00000022450Lsm310095.098Nannospalax_galili
ENSOCUG00000011088-9976.238ENSNGAG00000010207-9976.238Nannospalax_galili
ENSOCUG00000011088-10071.569ENSNGAG00000013716-10071.569Nannospalax_galili
ENSOCUG00000011088-10091.176ENSNBRG00000014318lsm310091.176Neolamprologus_brichardi
ENSOCUG00000011088-10086.275ENSNLEG00000030229-10086.275Nomascus_leucogenys
ENSOCUG00000011088-10095.098ENSNLEG00000005079LSM310095.098Nomascus_leucogenys
ENSOCUG00000011088-10094.118ENSODEG00000019740-10094.118Octodon_degus
ENSOCUG00000011088-10095.098ENSODEG00000001726LSM310095.098Octodon_degus
ENSOCUG00000011088-10088.235ENSODEG00000019403-10088.235Octodon_degus
ENSOCUG00000011088-10093.137ENSODEG00000019158-10093.137Octodon_degus
ENSOCUG00000011088-10091.176ENSONIG00000021369-10091.176Oreochromis_niloticus
ENSOCUG00000011088-10091.176ENSONIG00000000370lsm310091.176Oreochromis_niloticus
ENSOCUG00000011088-10094.118ENSOANG00000012273LSM310094.118Ornithorhynchus_anatinus
ENSOCUG00000011088-10090.196ENSORLG00000025900lsm310090.196Oryzias_latipes
ENSOCUG00000011088-10090.196ENSORLG00020007125lsm310090.196Oryzias_latipes_hni
ENSOCUG00000011088-10090.196ENSORLG00015002944lsm310090.196Oryzias_latipes_hsok
ENSOCUG00000011088-10090.196ENSOMEG00000001915lsm310090.196Oryzias_melastigma
ENSOCUG00000011088-10085.294ENSOGAG00000033051-10085.294Otolemur_garnettii
ENSOCUG00000011088-9692.857ENSOGAG00000028858-10092.857Otolemur_garnettii
ENSOCUG00000011088-10095.098ENSOGAG00000007659-10095.098Otolemur_garnettii
ENSOCUG00000011088-10094.175ENSOARG00000000600LSM310094.175Ovis_aries
ENSOCUG00000011088-10095.098ENSPPAG00000034074LSM310095.098Pan_paniscus
ENSOCUG00000011088-9987.129ENSPPRG00000010610-8987.129Panthera_pardus
ENSOCUG00000011088-10094.118ENSPPRG00000020953-10094.118Panthera_pardus
ENSOCUG00000011088-10095.098ENSPPRG00000012912-10095.098Panthera_pardus
ENSOCUG00000011088-10095.098ENSPTIG00000003463-10095.098Panthera_tigris_altaica
ENSOCUG00000011088-10095.098ENSPTIG00000013072-10095.098Panthera_tigris_altaica
ENSOCUG00000011088-10095.098ENSPTRG00000014650LSM310095.098Pan_troglodytes
ENSOCUG00000011088-10095.098ENSPANG00000009378LSM310095.098Papio_anubis
ENSOCUG00000011088-10075.490ENSPANG00000032192-10075.490Papio_anubis
ENSOCUG00000011088-10093.137ENSPKIG00000008037lsm39193.137Paramormyrops_kingsleyae
ENSOCUG00000011088-10094.118ENSPSIG00000015720LSM310094.118Pelodiscus_sinensis
ENSOCUG00000011088-9194.624ENSPMGG00000012103lsm39494.624Periophthalmus_magnuspinnatus
ENSOCUG00000011088-10095.098ENSPEMG00000015797Lsm310095.098Peromyscus_maniculatus_bairdii
ENSOCUG00000011088-10078.431ENSPEMG00000020213-10078.431Peromyscus_maniculatus_bairdii
ENSOCUG00000011088-10091.176ENSPFOG00000008372lsm310091.176Poecilia_formosa
ENSOCUG00000011088-10091.176ENSPLAG00000000563lsm310091.176Poecilia_latipinna
ENSOCUG00000011088-10091.176ENSPMEG00000022052lsm310091.176Poecilia_mexicana
ENSOCUG00000011088-10091.176ENSPREG00000022485lsm310091.176Poecilia_reticulata
ENSOCUG00000011088-10095.098ENSPPYG00000013402LSM310095.098Pongo_abelii
ENSOCUG00000011088-10095.098ENSPCAG00000017077LSM310095.098Procavia_capensis
ENSOCUG00000011088-9471.875ENSPCOG00000014435-9871.875Propithecus_coquereli
ENSOCUG00000011088-10094.118ENSPCOG00000016217-10094.118Propithecus_coquereli
ENSOCUG00000011088-10095.098ENSPVAG00000016795LSM310095.098Pteropus_vampyrus
ENSOCUG00000011088-10091.176ENSPNYG00000009552lsm37391.176Pundamilia_nyererei
ENSOCUG00000011088-10092.157ENSPNAG00000023467lsm310092.157Pygocentrus_nattereri
ENSOCUG00000011088-10095.098ENSRNOG00000008733Lsm310095.098Rattus_norvegicus
ENSOCUG00000011088-10078.431ENSRBIG00000043783-10078.431Rhinopithecus_bieti
ENSOCUG00000011088-10095.098ENSRBIG00000034399LSM310095.098Rhinopithecus_bieti
ENSOCUG00000011088-10095.098ENSRROG00000033276-10095.098Rhinopithecus_roxellana
ENSOCUG00000011088-10084.314ENSRROG00000044047-10084.314Rhinopithecus_roxellana
ENSOCUG00000011088-10079.412ENSRROG00000039868-10079.412Rhinopithecus_roxellana
ENSOCUG00000011088-10077.451ENSRROG00000044056-10077.451Rhinopithecus_roxellana
ENSOCUG00000011088-10095.098ENSSBOG00000024310LSM310095.098Saimiri_boliviensis_boliviensis
ENSOCUG00000011088-10092.157ENSSFOG00015007071lsm310092.157Scleropages_formosus
ENSOCUG00000011088-10091.176ENSSMAG00000001818lsm310091.176Scophthalmus_maximus
ENSOCUG00000011088-10091.176ENSSDUG00000006040lsm310091.176Seriola_dumerili
ENSOCUG00000011088-10091.176ENSSLDG00000006399lsm310091.176Seriola_lalandi_dorsalis
ENSOCUG00000011088-57100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSOCUG00000011088-10084.314ENSSPUG00000005394LSM310084.314Sphenodon_punctatus
ENSOCUG00000011088-88100.000ENSSPUG00000017047-94100.000Sphenodon_punctatus
ENSOCUG00000011088-10080.392ENSSPAG00000000934lsm310080.392Stegastes_partitus
ENSOCUG00000011088-10095.098ENSSSCG00000011601LSM310095.098Sus_scrofa
ENSOCUG00000011088-9572.165ENSSSCG00000023718-9972.165Sus_scrofa
ENSOCUG00000011088-10094.118ENSTGUG00000008327LSM310094.118Taeniopygia_guttata
ENSOCUG00000011088-10091.176ENSTRUG00000023175lsm310091.176Takifugu_rubripes
ENSOCUG00000011088-10091.176ENSTNIG00000005589lsm310091.176Tetraodon_nigroviridis
ENSOCUG00000011088-10085.294ENSTBEG00000001050-9985.294Tupaia_belangeri
ENSOCUG00000011088-10095.098ENSTTRG00000011197LSM310095.098Tursiops_truncatus
ENSOCUG00000011088-10095.098ENSUAMG00000017250-10095.098Ursus_americanus
ENSOCUG00000011088-10095.098ENSUMAG00000015905LSM310095.098Ursus_maritimus
ENSOCUG00000011088-88100.000ENSVPAG00000010709LSM395100.000Vicugna_pacos
ENSOCUG00000011088-10086.275ENSVVUG00000024228-10086.275Vulpes_vulpes
ENSOCUG00000011088-10089.216ENSVVUG00000005684-10089.216Vulpes_vulpes
ENSOCUG00000011088-10090.196ENSVVUG00000006481-10090.196Vulpes_vulpes
ENSOCUG00000011088-10091.176ENSVVUG00000007332-9191.176Vulpes_vulpes
ENSOCUG00000011088-10090.196ENSVVUG00000029294-10090.196Vulpes_vulpes
ENSOCUG00000011088-10093.137ENSXETG00000011534lsm310093.137Xenopus_tropicalis
ENSOCUG00000011088-10091.176ENSXCOG00000017432LSM310091.176Xiphophorus_couchianus
ENSOCUG00000011088-10091.176ENSXMAG00000009151lsm310091.176Xiphophorus_maculatus

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