EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000011587 (Gene tree)
Gene ID: 100339264
Gene Symbol: A1CF
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 87983 bases
Position: chr18:34694541-34782523
Accession: 100339264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000009969	DND1_DSRM	PF14709.7	6.7e-25	1	1
ENSOCUP00000009969	RRM_1	PF00076.22	5.7e-39	1	3
ENSOCUP00000009969	RRM_1	PF00076.22	5.7e-39	2	3
ENSOCUP00000009969	RRM_1	PF00076.22	5.7e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000011592	A1CF-201	1938	XM_002718366	ENSOCUP00000009969	588 (aa)	XP_002718412	G1T1K7

Gene Model

Click here to download ENSOCUG00000011587's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000011587's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000011587	A1CF	53	51.875	ENSOCUG00000006686	HNRNPR	50	51.875
ENSOCUG00000011587	A1CF	92	72.333	ENSOCUG00000017859	RBM46	85	72.333
ENSOCUG00000011587	A1CF	74	59.459	ENSOCUG00000012034	RBM47	73	59.459
ENSOCUG00000011587	A1CF	52	52.104	ENSOCUG00000000601	SYNCRIP	63	45.570

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000011587	A1CF	100	94.898	ENSG00000148584	A1CF	100	98.010	Homo_sapiens
ENSOCUG00000011587	A1CF	100	74.329	ENSAPOG00000008259	a1cf	100	73.993	Acanthochromis_polyacanthus
ENSOCUG00000011587	A1CF	100	91.779	ENSAMEG00000000523	A1CF	100	91.611	Ailuropoda_melanoleuca
ENSOCUG00000011587	A1CF	100	75.702	ENSACIG00000008632	a1cf	100	77.025	Amphilophus_citrinellus
ENSOCUG00000011587	A1CF	100	74.834	ENSAOCG00000023744	a1cf	96	83.768	Amphiprion_ocellaris
ENSOCUG00000011587	A1CF	100	73.693	ENSAPEG00000009537	a1cf	100	74.183	Amphiprion_percula
ENSOCUG00000011587	A1CF	100	76.073	ENSATEG00000013720	a1cf	100	77.393	Anabas_testudineus
ENSOCUG00000011587	A1CF	100	85.762	ENSAPLG00000002964	A1CF	100	85.260	Anas_platyrhynchos
ENSOCUG00000011587	A1CF	100	83.192	ENSACAG00000015269	A1CF	100	83.192	Anolis_carolinensis
ENSOCUG00000011587	A1CF	100	95.748	ENSANAG00000019974	A1CF	100	94.388	Aotus_nancymaae
ENSOCUG00000011587	A1CF	100	73.388	ENSACLG00000017428	a1cf	100	74.711	Astatotilapia_calliptera
ENSOCUG00000011587	A1CF	100	73.388	ENSAMXG00000018180	a1cf	100	73.223	Astyanax_mexicanus
ENSOCUG00000011587	A1CF	100	94.048	ENSBTAG00000021195	A1CF	100	93.707	Bos_taurus
ENSOCUG00000011587	A1CF	100	94.799	ENSCJAG00000005045	A1CF	100	93.456	Callithrix_jacchus
ENSOCUG00000011587	A1CF	100	92.114	ENSCAFG00000015581	A1CF	100	91.779	Canis_familiaris
ENSOCUG00000011587	A1CF	100	92.114	ENSCAFG00020026421	A1CF	98	94.276	Canis_lupus_dingo
ENSOCUG00000011587	A1CF	100	91.946	ENSCHIG00000020411	A1CF	100	91.611	Capra_hircus
ENSOCUG00000011587	A1CF	94	94.414	ENSTSYG00000001755	A1CF	100	94.234	Carlito_syrichta
ENSOCUG00000011587	A1CF	100	81.595	ENSCAPG00000017386	A1CF	100	81.595	Cavia_aperea
ENSOCUG00000011587	A1CF	100	93.121	ENSCPOG00000009807	A1CF	100	92.450	Cavia_porcellus
ENSOCUG00000011587	A1CF	100	94.463	ENSCCAG00000018168	A1CF	100	93.289	Cebus_capucinus
ENSOCUG00000011587	A1CF	100	94.728	ENSCATG00000043715	A1CF	100	94.048	Cercocebus_atys
ENSOCUG00000011587	A1CF	100	93.132	ENSCLAG00000010424	A1CF	100	92.462	Chinchilla_lanigera
ENSOCUG00000011587	A1CF	100	93.456	ENSCSAG00000007032	A1CF	100	92.785	Chlorocebus_sabaeus
ENSOCUG00000011587	A1CF	98	90.206	ENSCHOG00000009089	A1CF	98	90.034	Choloepus_hoffmanni
ENSOCUG00000011587	A1CF	100	85.092	ENSCPBG00000026464	A1CF	100	84.925	Chrysemys_picta_bellii
ENSOCUG00000011587	A1CF	100	93.456	ENSCANG00000038032	A1CF	100	92.785	Colobus_angolensis_palliatus
ENSOCUG00000011587	A1CF	100	92.450	ENSCGRG00001017413	A1cf	100	92.282	Cricetulus_griseus_chok1gshd
ENSOCUG00000011587	A1CF	100	91.946	ENSCGRG00000017332	A1cf	100	91.946	Cricetulus_griseus_crigri
ENSOCUG00000011587	A1CF	100	73.256	ENSCSEG00000002361	a1cf	100	74.585	Cynoglossus_semilaevis
ENSOCUG00000011587	A1CF	100	75.413	ENSCVAG00000010520	a1cf	100	76.898	Cyprinodon_variegatus
ENSOCUG00000011587	A1CF	100	78.788	ENSDARG00000002968	a1cf	100	79.966	Danio_rerio
ENSOCUG00000011587	A1CF	100	92.450	ENSDNOG00000002829	A1CF	100	92.282	Dasypus_novemcinctus
ENSOCUG00000011587	A1CF	82	91.667	ENSETEG00000012527	A1CF	81	91.667	Echinops_telfairi
ENSOCUG00000011587	A1CF	100	94.137	ENSEASG00005012924	A1CF	100	94.472	Equus_asinus_asinus
ENSOCUG00000011587	A1CF	100	93.970	ENSECAG00000010424	A1CF	100	94.305	Equus_caballus
ENSOCUG00000011587	A1CF	78	80.435	ENSEEUG00000000013	A1CF	96	82.005	Erinaceus_europaeus
ENSOCUG00000011587	A1CF	100	76.412	ENSELUG00000003159	a1cf	100	76.910	Esox_lucius
ENSOCUG00000011587	A1CF	100	92.517	ENSFCAG00000011179	A1CF	100	92.177	Felis_catus
ENSOCUG00000011587	A1CF	100	86.757	ENSFALG00000013183	A1CF	100	86.418	Ficedula_albicollis
ENSOCUG00000011587	A1CF	100	93.537	ENSFDAG00000019371	A1CF	100	92.857	Fukomys_damarensis
ENSOCUG00000011587	A1CF	100	70.462	ENSFHEG00000019652	a1cf	96	81.250	Fundulus_heteroclitus
ENSOCUG00000011587	A1CF	100	70.840	ENSGMOG00000018943	a1cf	100	70.346	Gadus_morhua
ENSOCUG00000011587	A1CF	95	85.336	ENSGALG00000003765	A1CF	97	84.982	Gallus_gallus
ENSOCUG00000011587	A1CF	100	70.000	ENSGAFG00000014868	a1cf	100	71.000	Gambusia_affinis
ENSOCUG00000011587	A1CF	100	72.368	ENSGACG00000010241	a1cf	100	72.862	Gasterosteus_aculeatus
ENSOCUG00000011587	A1CF	94	84.929	ENSGAGG00000016508	A1CF	97	84.752	Gopherus_agassizii
ENSOCUG00000011587	A1CF	100	93.792	ENSGGOG00000009670	A1CF	100	92.953	Gorilla_gorilla
ENSOCUG00000011587	A1CF	100	74.711	ENSHBUG00000021959	a1cf	100	76.694	Haplochromis_burtoni
ENSOCUG00000011587	A1CF	100	92.617	ENSHGLG00000008955	A1CF	100	92.450	Heterocephalus_glaber_female
ENSOCUG00000011587	A1CF	100	91.946	ENSHGLG00100000518	A1CF	100	91.779	Heterocephalus_glaber_male
ENSOCUG00000011587	A1CF	100	68.293	ENSHCOG00000017669	a1cf	100	70.779	Hippocampus_comes
ENSOCUG00000011587	A1CF	89	82.276	ENSIPUG00000010367	a1cf	95	82.830	Ictalurus_punctatus
ENSOCUG00000011587	A1CF	100	75.122	ENSKMAG00000006568	a1cf	100	75.772	Kryptolebias_marmoratus
ENSOCUG00000011587	A1CF	99	73.607	ENSLBEG00000020994	a1cf	98	74.754	Labrus_bergylta
ENSOCUG00000011587	A1CF	100	82.095	ENSLACG00000008061	A1CF	100	81.419	Latimeria_chalumnae
ENSOCUG00000011587	A1CF	100	80.033	ENSLOCG00000006302	a1cf	100	79.700	Lepisosteus_oculatus
ENSOCUG00000011587	A1CF	100	92.450	ENSLAFG00000015462	A1CF	100	92.282	Loxodonta_africana
ENSOCUG00000011587	A1CF	100	95.068	ENSMFAG00000035948	A1CF	100	94.388	Macaca_fascicularis
ENSOCUG00000011587	A1CF	100	95.068	ENSMMUG00000007077	A1CF	100	94.388	Macaca_mulatta
ENSOCUG00000011587	A1CF	100	94.728	ENSMNEG00000031454	A1CF	100	94.048	Macaca_nemestrina
ENSOCUG00000011587	A1CF	100	93.456	ENSMLEG00000037223	A1CF	100	92.785	Mandrillus_leucophaeus
ENSOCUG00000011587	A1CF	100	73.134	ENSMAMG00000010402	a1cf	100	75.166	Mastacembelus_armatus
ENSOCUG00000011587	A1CF	100	74.043	ENSMZEG00005013245	a1cf	100	74.709	Maylandia_zebra
ENSOCUG00000011587	A1CF	100	85.786	ENSMGAG00000001507	A1CF	100	85.452	Meleagris_gallopavo
ENSOCUG00000011587	A1CF	100	91.443	ENSMAUG00000007422	A1cf	100	91.275	Mesocricetus_auratus
ENSOCUG00000011587	A1CF	100	93.729	ENSMICG00000003377	A1CF	100	93.729	Microcebus_murinus
ENSOCUG00000011587	A1CF	100	92.282	ENSMOCG00000021536	A1cf	100	91.611	Microtus_ochrogaster
ENSOCUG00000011587	A1CF	100	68.543	ENSMMOG00000009422	a1cf	100	69.536	Mola_mola
ENSOCUG00000011587	A1CF	89	91.221	ENSMODG00000016478	A1CF	96	91.892	Monodelphis_domestica
ENSOCUG00000011587	A1CF	100	73.019	ENSMALG00000012992	a1cf	100	72.513	Monopterus_albus
ENSOCUG00000011587	A1CF	100	92.007	MGP_CAROLIEiJ_G0022873	A1cf	100	91.327	Mus_caroli
ENSOCUG00000011587	A1CF	100	92.007	ENSMUSG00000052595	A1cf	99	94.226	Mus_musculus
ENSOCUG00000011587	A1CF	100	91.837	MGP_PahariEiJ_G0014366	A1cf	100	90.816	Mus_pahari
ENSOCUG00000011587	A1CF	100	91.497	MGP_SPRETEiJ_G0023792	A1cf	100	90.816	Mus_spretus
ENSOCUG00000011587	A1CF	100	86.074	ENSMPUG00000016971	A1CF	100	85.906	Mustela_putorius_furo
ENSOCUG00000011587	A1CF	100	91.946	ENSMLUG00000016071	A1CF	100	91.779	Myotis_lucifugus
ENSOCUG00000011587	A1CF	100	92.785	ENSNGAG00000015136	A1cf	100	92.282	Nannospalax_galili
ENSOCUG00000011587	A1CF	100	75.041	ENSNBRG00000001712	a1cf	100	77.025	Neolamprologus_brichardi
ENSOCUG00000011587	A1CF	100	95.134	ENSNLEG00000012028	A1CF	100	95.134	Nomascus_leucogenys
ENSOCUG00000011587	A1CF	94	88.489	ENSMEUG00000015909	A1CF	100	88.309	Notamacropus_eugenii
ENSOCUG00000011587	A1CF	91	82.601	ENSOPRG00000010667	A1CF	100	82.601	Ochotona_princeps
ENSOCUG00000011587	A1CF	100	75.372	ENSONIG00000019105	a1cf	100	76.529	Oreochromis_niloticus
ENSOCUG00000011587	A1CF	78	89.760	ENSOANG00000007360	A1CF	99	89.760	Ornithorhynchus_anatinus
ENSOCUG00000011587	A1CF	100	72.594	ENSORLG00000013342	a1cf	100	72.375	Oryzias_latipes
ENSOCUG00000011587	A1CF	100	74.104	ENSORLG00020000586	a1cf	100	73.616	Oryzias_latipes_hni
ENSOCUG00000011587	A1CF	100	73.941	ENSORLG00015018569	a1cf	100	73.779	Oryzias_latipes_hsok
ENSOCUG00000011587	A1CF	100	75.124	ENSOMEG00000013531	a1cf	100	75.124	Oryzias_melastigma
ENSOCUG00000011587	A1CF	100	91.946	ENSOGAG00000012884	A1CF	100	91.779	Otolemur_garnettii
ENSOCUG00000011587	A1CF	100	91.946	ENSOARG00000013695	A1CF	100	91.611	Ovis_aries
ENSOCUG00000011587	A1CF	97	92.042	ENSPPAG00000028115	A1CF	100	95.344	Pan_paniscus
ENSOCUG00000011587	A1CF	100	91.611	ENSPPRG00000012180	A1CF	100	91.275	Panthera_pardus
ENSOCUG00000011587	A1CF	100	91.611	ENSPTIG00000021223	A1CF	100	91.275	Panthera_tigris_altaica
ENSOCUG00000011587	A1CF	100	94.898	ENSPTRG00000002508	A1CF	100	94.048	Pan_troglodytes
ENSOCUG00000011587	A1CF	100	95.068	ENSPANG00000021988	A1CF	100	94.388	Papio_anubis
ENSOCUG00000011587	A1CF	100	78.405	ENSPKIG00000025176	a1cf	100	78.405	Paramormyrops_kingsleyae
ENSOCUG00000011587	A1CF	100	86.418	ENSPSIG00000010318	A1CF	100	86.248	Pelodiscus_sinensis
ENSOCUG00000011587	A1CF	88	71.760	ENSPMGG00000013359	a1cf	99	67.876	Periophthalmus_magnuspinnatus
ENSOCUG00000011587	A1CF	100	91.946	ENSPEMG00000015021	A1cf	100	91.275	Peromyscus_maniculatus_bairdii
ENSOCUG00000011587	A1CF	100	88.795	ENSPCIG00000002175	A1CF	100	88.625	Phascolarctos_cinereus
ENSOCUG00000011587	A1CF	100	73.941	ENSPFOG00000007437	-	100	75.407	Poecilia_formosa
ENSOCUG00000011587	A1CF	100	74.104	ENSPFOG00000006683	a1cf	100	75.570	Poecilia_formosa
ENSOCUG00000011587	A1CF	100	74.917	ENSPLAG00000000026	a1cf	100	76.403	Poecilia_latipinna
ENSOCUG00000011587	A1CF	100	74.917	ENSPLAG00000001210	-	100	76.403	Poecilia_latipinna
ENSOCUG00000011587	A1CF	100	66.503	ENSPMEG00000015529	-	100	67.974	Poecilia_mexicana
ENSOCUG00000011587	A1CF	100	67.384	ENSPMEG00000000921	a1cf	100	68.874	Poecilia_mexicana
ENSOCUG00000011587	A1CF	100	73.779	ENSPREG00000016298	a1cf	100	75.244	Poecilia_reticulata
ENSOCUG00000011587	A1CF	100	96.599	ENSPPYG00000002819	A1CF	100	96.599	Pongo_abelii
ENSOCUG00000011587	A1CF	79	73.176	ENSPCAG00000006463	A1CF	70	85.714	Procavia_capensis
ENSOCUG00000011587	A1CF	100	94.128	ENSPCOG00000024172	A1CF	100	94.128	Propithecus_coquereli
ENSOCUG00000011587	A1CF	100	73.899	ENSPNYG00000017944	a1cf	100	75.856	Pundamilia_nyererei
ENSOCUG00000011587	A1CF	100	80.705	ENSPNAG00000007704	a1cf	100	80.369	Pygocentrus_nattereri
ENSOCUG00000011587	A1CF	100	92.347	ENSRNOG00000033195	A1cf	100	91.667	Rattus_norvegicus
ENSOCUG00000011587	A1CF	100	87.124	ENSRBIG00000042892	A1CF	100	92.659	Rhinopithecus_bieti
ENSOCUG00000011587	A1CF	100	93.792	ENSRROG00000041398	A1CF	100	93.121	Rhinopithecus_roxellana
ENSOCUG00000011587	A1CF	100	94.799	ENSSBOG00000021930	A1CF	100	95.833	Saimiri_boliviensis_boliviensis
ENSOCUG00000011587	A1CF	100	88.455	ENSSHAG00000005096	A1CF	100	88.455	Sarcophilus_harrisii
ENSOCUG00000011587	A1CF	100	79.496	ENSSFOG00015011774	a1cf	100	79.328	Scleropages_formosus
ENSOCUG00000011587	A1CF	100	73.779	ENSSMAG00000013271	a1cf	100	74.104	Scophthalmus_maximus
ENSOCUG00000011587	A1CF	100	74.295	ENSSDUG00000013930	a1cf	100	75.290	Seriola_dumerili
ENSOCUG00000011587	A1CF	100	69.900	ENSSLDG00000004290	a1cf	100	70.903	Seriola_lalandi_dorsalis
ENSOCUG00000011587	A1CF	95	84.079	ENSSARG00000005940	A1CF	96	83.721	Sorex_araneus
ENSOCUG00000011587	A1CF	95	84.737	ENSSPUG00000006797	A1CF	95	84.035	Sphenodon_punctatus
ENSOCUG00000011587	A1CF	100	92.785	ENSSSCG00000010431	A1CF	100	92.450	Sus_scrofa
ENSOCUG00000011587	A1CF	100	86.288	ENSTGUG00000005090	A1CF	100	86.288	Taeniopygia_guttata
ENSOCUG00000011587	A1CF	100	73.127	ENSTRUG00000001982	a1cf	100	72.431	Takifugu_rubripes
ENSOCUG00000011587	A1CF	100	73.701	ENSTNIG00000003580	a1cf	100	73.171	Tetraodon_nigroviridis
ENSOCUG00000011587	A1CF	97	87.544	ENSTTRG00000013190	A1CF	95	87.193	Tursiops_truncatus
ENSOCUG00000011587	A1CF	100	93.197	ENSUAMG00000020065	A1CF	100	92.857	Ursus_americanus
ENSOCUG00000011587	A1CF	100	91.611	ENSUMAG00000011162	A1CF	100	91.107	Ursus_maritimus
ENSOCUG00000011587	A1CF	87	89.474	ENSVPAG00000006130	A1CF	86	89.474	Vicugna_pacos
ENSOCUG00000011587	A1CF	100	93.367	ENSVVUG00000002504	A1CF	100	93.027	Vulpes_vulpes
ENSOCUG00000011587	A1CF	100	76.206	ENSXETG00000006611	a1cf	100	76.040	Xenopus_tropicalis
ENSOCUG00000011587	A1CF	100	76.246	ENSXCOG00000003302	a1cf	100	77.243	Xiphophorus_couchianus
ENSOCUG00000011587	A1CF	100	75.246	ENSXMAG00000016703	a1cf	100	76.230	Xiphophorus_maculatus