EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000011898 (Gene tree)
Gene ID: 100356135
Gene Symbol: -
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 8598 bases
Position: chr18:45647217-45655814
Accession: 100356135
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000010226	EXOSC1	PF10447.9	8.1e-14	1	1
ENSOCUP00000010226	ECR1_N	PF14382.6	3.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000011898	-	591	XM_002718613	ENSOCUP00000010226	196 (aa)	XP_002718659	G1T271

Gene Model

Click here to download ENSOCUG00000011898's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000011898's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000011898	-	100	93.878	ENSOCUG00000026461	-	100	93.878

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000011898	-	100	95.918	ENSG00000171311	EXOSC1	100	95.918	Homo_sapiens
ENSOCUG00000011898	-	98	78.646	ENSAPOG00000007822	exosc1	98	78.646	Acanthochromis_polyacanthus
ENSOCUG00000011898	-	100	97.449	ENSAMEG00000000129	EXOSC1	100	97.449	Ailuropoda_melanoleuca
ENSOCUG00000011898	-	96	78.307	ENSACIG00000018956	exosc1	92	78.307	Amphilophus_citrinellus
ENSOCUG00000011898	-	98	78.646	ENSAOCG00000010699	exosc1	98	78.646	Amphiprion_ocellaris
ENSOCUG00000011898	-	92	69.444	ENSAPEG00000012690	exosc1	96	69.444	Amphiprion_percula
ENSOCUG00000011898	-	98	78.125	ENSATEG00000018683	exosc1	98	78.125	Anabas_testudineus
ENSOCUG00000011898	-	99	85.052	ENSACAG00000002101	EXOSC1	99	85.052	Anolis_carolinensis
ENSOCUG00000011898	-	100	97.449	ENSANAG00000034669	EXOSC1	100	97.449	Aotus_nancymaae
ENSOCUG00000011898	-	98	78.646	ENSACLG00000021243	exosc1	98	78.646	Astatotilapia_calliptera
ENSOCUG00000011898	-	98	80.208	ENSAMXG00000011116	exosc1	98	80.208	Astyanax_mexicanus
ENSOCUG00000011898	-	100	97.959	ENSBTAG00000012699	EXOSC1	100	97.959	Bos_taurus
ENSOCUG00000011898	-	92	32.275	WBGene00012966	exos-1	90	32.275	Caenorhabditis_elegans
ENSOCUG00000011898	-	100	96.939	ENSCJAG00000016586	EXOSC1	100	96.939	Callithrix_jacchus
ENSOCUG00000011898	-	100	97.449	ENSCAFG00000009068	EXOSC1	94	97.449	Canis_familiaris
ENSOCUG00000011898	-	100	97.449	ENSCAFG00020006002	EXOSC1	94	97.449	Canis_lupus_dingo
ENSOCUG00000011898	-	100	97.959	ENSCHIG00000015253	EXOSC1	100	97.959	Capra_hircus
ENSOCUG00000011898	-	100	96.429	ENSTSYG00000000760	EXOSC1	100	96.429	Carlito_syrichta
ENSOCUG00000011898	-	100	97.449	ENSCPOG00000001173	EXOSC1	100	97.449	Cavia_porcellus
ENSOCUG00000011898	-	100	56.061	ENSCCAG00000023986	EXOSC1	100	56.061	Cebus_capucinus
ENSOCUG00000011898	-	100	95.918	ENSCATG00000034114	EXOSC1	100	95.918	Cercocebus_atys
ENSOCUG00000011898	-	100	97.959	ENSCLAG00000002463	EXOSC1	100	97.959	Chinchilla_lanigera
ENSOCUG00000011898	-	100	95.408	ENSCSAG00000005870	EXOSC1	100	95.408	Chlorocebus_sabaeus
ENSOCUG00000011898	-	96	83.511	ENSCHOG00000006477	EXOSC1	100	83.511	Choloepus_hoffmanni
ENSOCUG00000011898	-	55	83.178	ENSCPBG00000011949	EXOSC1	88	83.178	Chrysemys_picta_bellii
ENSOCUG00000011898	-	95	55.851	ENSCING00000022734	-	89	55.851	Ciona_intestinalis
ENSOCUG00000011898	-	95	56.915	ENSCSAVG00000010865	-	95	56.915	Ciona_savignyi
ENSOCUG00000011898	-	100	95.918	ENSCANG00000034159	EXOSC1	100	95.918	Colobus_angolensis_palliatus
ENSOCUG00000011898	-	100	96.939	ENSCGRG00001000335	Exosc1	100	96.939	Cricetulus_griseus_chok1gshd
ENSOCUG00000011898	-	100	96.939	ENSCGRG00000011602	Exosc1	100	96.939	Cricetulus_griseus_crigri
ENSOCUG00000011898	-	98	67.188	ENSCSEG00000007895	exosc1	95	67.188	Cynoglossus_semilaevis
ENSOCUG00000011898	-	98	75.000	ENSCVAG00000016748	exosc1	98	75.000	Cyprinodon_variegatus
ENSOCUG00000011898	-	98	79.688	ENSDARG00000059841	exosc1	98	79.688	Danio_rerio
ENSOCUG00000011898	-	76	96.644	ENSDNOG00000007983	EXOSC1	100	96.644	Dasypus_novemcinctus
ENSOCUG00000011898	-	100	97.449	ENSDORG00000016528	Exosc1	100	97.449	Dipodomys_ordii
ENSOCUG00000011898	-	94	48.421	FBgn0032346	Csl4	92	48.421	Drosophila_melanogaster
ENSOCUG00000011898	-	100	94.388	ENSETEG00000002469	-	100	94.388	Echinops_telfairi
ENSOCUG00000011898	-	99	61.421	ENSEBUG00000008164	exosc1	98	61.421	Eptatretus_burgeri
ENSOCUG00000011898	-	100	88.265	ENSEASG00005008684	EXOSC1	100	88.265	Equus_asinus_asinus
ENSOCUG00000011898	-	61	78.333	ENSECAG00000010621	EXOSC1	71	78.333	Equus_caballus
ENSOCUG00000011898	-	100	96.429	ENSEEUG00000005647	EXOSC1	100	96.429	Erinaceus_europaeus
ENSOCUG00000011898	-	94	79.459	ENSELUG00000017369	exosc1	81	79.459	Esox_lucius
ENSOCUG00000011898	-	100	97.449	ENSFCAG00000040563	EXOSC1	94	97.449	Felis_catus
ENSOCUG00000011898	-	100	83.163	ENSFALG00000008450	EXOSC1	100	83.163	Ficedula_albicollis
ENSOCUG00000011898	-	100	97.449	ENSFDAG00000000846	EXOSC1	100	97.449	Fukomys_damarensis
ENSOCUG00000011898	-	98	75.000	ENSFHEG00000009154	exosc1	98	75.000	Fundulus_heteroclitus
ENSOCUG00000011898	-	98	78.646	ENSGMOG00000008993	exosc1	98	78.646	Gadus_morhua
ENSOCUG00000011898	-	100	72.959	ENSGALG00000039917	EXOSC1	100	87.075	Gallus_gallus
ENSOCUG00000011898	-	98	75.000	ENSGAFG00000010265	exosc1	94	75.000	Gambusia_affinis
ENSOCUG00000011898	-	98	78.646	ENSGACG00000018936	exosc1	98	78.646	Gasterosteus_aculeatus
ENSOCUG00000011898	-	100	85.714	ENSGAGG00000019192	EXOSC1	100	85.714	Gopherus_agassizii
ENSOCUG00000011898	-	100	84.694	ENSGGOG00000003099	EXOSC1	100	84.694	Gorilla_gorilla
ENSOCUG00000011898	-	98	78.646	ENSHBUG00000017857	exosc1	98	78.646	Haplochromis_burtoni
ENSOCUG00000011898	-	100	96.939	ENSHGLG00000016927	EXOSC1	100	96.939	Heterocephalus_glaber_female
ENSOCUG00000011898	-	100	96.939	ENSHGLG00100012208	EXOSC1	100	96.939	Heterocephalus_glaber_male
ENSOCUG00000011898	-	98	77.604	ENSHCOG00000019882	exosc1	98	77.604	Hippocampus_comes
ENSOCUG00000011898	-	98	79.167	ENSIPUG00000007685	exosc1	98	79.167	Ictalurus_punctatus
ENSOCUG00000011898	-	63	82.114	ENSSTOG00000029860	-	93	82.114	Ictidomys_tridecemlineatus
ENSOCUG00000011898	-	100	97.959	ENSSTOG00000006615	EXOSC1	100	97.959	Ictidomys_tridecemlineatus
ENSOCUG00000011898	-	100	97.449	ENSJJAG00000013311	Exosc1	100	97.449	Jaculus_jaculus
ENSOCUG00000011898	-	98	76.684	ENSKMAG00000001202	exosc1	81	76.684	Kryptolebias_marmoratus
ENSOCUG00000011898	-	98	78.125	ENSLBEG00000011448	exosc1	98	78.125	Labrus_bergylta
ENSOCUG00000011898	-	98	58.291	ENSLOCG00000003776	exosc1	99	58.291	Lepisosteus_oculatus
ENSOCUG00000011898	-	100	96.429	ENSLAFG00000015983	EXOSC1	100	96.429	Loxodonta_africana
ENSOCUG00000011898	-	100	95.918	ENSMFAG00000001493	EXOSC1	100	95.918	Macaca_fascicularis
ENSOCUG00000011898	-	100	95.918	ENSMMUG00000020028	EXOSC1	100	89.447	Macaca_mulatta
ENSOCUG00000011898	-	100	95.918	ENSMNEG00000029816	EXOSC1	100	95.918	Macaca_nemestrina
ENSOCUG00000011898	-	100	90.816	ENSMLEG00000027643	EXOSC1	100	90.816	Mandrillus_leucophaeus
ENSOCUG00000011898	-	98	79.167	ENSMAMG00000012200	exosc1	98	79.167	Mastacembelus_armatus
ENSOCUG00000011898	-	98	78.646	ENSMZEG00005007042	exosc1	98	78.646	Maylandia_zebra
ENSOCUG00000011898	-	100	85.714	ENSMAUG00000020462	-	100	85.714	Mesocricetus_auratus
ENSOCUG00000011898	-	100	96.939	ENSMICG00000007664	EXOSC1	92	96.939	Microcebus_murinus
ENSOCUG00000011898	-	100	96.939	ENSMOCG00000006004	-	100	96.939	Microtus_ochrogaster
ENSOCUG00000011898	-	97	90.576	ENSMOCG00000017124	-	97	90.576	Microtus_ochrogaster
ENSOCUG00000011898	-	99	58.974	ENSMMOG00000021403	exosc1	99	58.974	Mola_mola
ENSOCUG00000011898	-	100	92.386	ENSMODG00000004213	EXOSC1	100	92.386	Monodelphis_domestica
ENSOCUG00000011898	-	94	79.459	ENSMALG00000007061	exosc1	92	79.459	Monopterus_albus
ENSOCUG00000011898	-	100	96.429	MGP_CAROLIEiJ_G0022959	Exosc1	100	96.429	Mus_caroli
ENSOCUG00000011898	-	100	95.918	ENSMUSG00000034321	Exosc1	100	95.918	Mus_musculus
ENSOCUG00000011898	-	100	96.939	MGP_PahariEiJ_G0014449	Exosc1	100	96.939	Mus_pahari
ENSOCUG00000011898	-	100	96.429	MGP_SPRETEiJ_G0023880	Exosc1	100	96.429	Mus_spretus
ENSOCUG00000011898	-	100	97.449	ENSMPUG00000017044	EXOSC1	100	97.449	Mustela_putorius_furo
ENSOCUG00000011898	-	100	96.939	ENSMLUG00000009228	EXOSC1	100	96.939	Myotis_lucifugus
ENSOCUG00000011898	-	100	95.918	ENSNGAG00000022033	Exosc1	100	95.918	Nannospalax_galili
ENSOCUG00000011898	-	98	59.375	ENSNBRG00000024007	exosc1	97	59.375	Neolamprologus_brichardi
ENSOCUG00000011898	-	100	95.408	ENSNLEG00000013872	EXOSC1	100	95.408	Nomascus_leucogenys
ENSOCUG00000011898	-	59	90.517	ENSMEUG00000002246	EXOSC1	100	90.517	Notamacropus_eugenii
ENSOCUG00000011898	-	100	96.429	ENSOPRG00000005065	EXOSC1	100	96.429	Ochotona_princeps
ENSOCUG00000011898	-	100	97.449	ENSODEG00000016709	EXOSC1	100	97.449	Octodon_degus
ENSOCUG00000011898	-	98	78.646	ENSONIG00000017683	exosc1	98	78.646	Oreochromis_niloticus
ENSOCUG00000011898	-	59	93.103	ENSOANG00000006563	EXOSC1	98	91.200	Ornithorhynchus_anatinus
ENSOCUG00000011898	-	98	77.202	ENSORLG00000011595	exosc1	98	77.202	Oryzias_latipes
ENSOCUG00000011898	-	98	77.202	ENSORLG00020005831	exosc1	98	77.202	Oryzias_latipes_hni
ENSOCUG00000011898	-	98	77.202	ENSORLG00015004317	exosc1	98	77.202	Oryzias_latipes_hsok
ENSOCUG00000011898	-	98	61.979	ENSOMEG00000013907	exosc1	98	61.979	Oryzias_melastigma
ENSOCUG00000011898	-	100	97.449	ENSOGAG00000016259	EXOSC1	100	97.449	Otolemur_garnettii
ENSOCUG00000011898	-	100	97.449	ENSOARG00000010136	EXOSC1	100	97.449	Ovis_aries
ENSOCUG00000011898	-	100	89.848	ENSPPAG00000039842	EXOSC1	100	89.848	Pan_paniscus
ENSOCUG00000011898	-	100	97.449	ENSPPRG00000023366	EXOSC1	100	97.449	Panthera_pardus
ENSOCUG00000011898	-	100	97.449	ENSPTIG00000017701	EXOSC1	100	97.449	Panthera_tigris_altaica
ENSOCUG00000011898	-	100	95.918	ENSPTRG00000002808	EXOSC1	100	95.918	Pan_troglodytes
ENSOCUG00000011898	-	100	95.918	ENSPANG00000021324	EXOSC1	100	95.918	Papio_anubis
ENSOCUG00000011898	-	98	79.688	ENSPKIG00000016037	exosc1	98	79.688	Paramormyrops_kingsleyae
ENSOCUG00000011898	-	75	81.633	ENSPSIG00000013571	EXOSC1	98	80.488	Pelodiscus_sinensis
ENSOCUG00000011898	-	98	68.229	ENSPMGG00000014002	exosc1	98	68.229	Periophthalmus_magnuspinnatus
ENSOCUG00000011898	-	100	96.939	ENSPEMG00000010710	-	100	96.939	Peromyscus_maniculatus_bairdii
ENSOCUG00000011898	-	95	70.745	ENSPMAG00000000195	exosc1	95	70.745	Petromyzon_marinus
ENSOCUG00000011898	-	100	93.367	ENSPCIG00000002210	EXOSC1	99	93.367	Phascolarctos_cinereus
ENSOCUG00000011898	-	98	74.479	ENSPFOG00000006755	exosc1	94	74.479	Poecilia_formosa
ENSOCUG00000011898	-	98	74.479	ENSPLAG00000005880	exosc1	98	74.479	Poecilia_latipinna
ENSOCUG00000011898	-	98	74.479	ENSPMEG00000015598	exosc1	94	74.479	Poecilia_mexicana
ENSOCUG00000011898	-	98	65.803	ENSPREG00000000405	exosc1	93	65.803	Poecilia_reticulata
ENSOCUG00000011898	-	100	95.408	ENSPPYG00000002531	EXOSC1	100	95.408	Pongo_abelii
ENSOCUG00000011898	-	100	96.429	ENSPCAG00000009135	EXOSC1	100	96.429	Procavia_capensis
ENSOCUG00000011898	-	100	90.816	ENSPCOG00000027539	EXOSC1	100	90.816	Propithecus_coquereli
ENSOCUG00000011898	-	100	97.449	ENSPVAG00000003372	EXOSC1	100	97.449	Pteropus_vampyrus
ENSOCUG00000011898	-	98	78.646	ENSPNYG00000021745	exosc1	98	78.646	Pundamilia_nyererei
ENSOCUG00000011898	-	98	79.167	ENSPNAG00000001944	exosc1	98	79.167	Pygocentrus_nattereri
ENSOCUG00000011898	-	100	96.939	ENSRNOG00000048708	Exosc1	100	96.939	Rattus_norvegicus
ENSOCUG00000011898	-	100	95.918	ENSRBIG00000035618	EXOSC1	100	95.918	Rhinopithecus_bieti
ENSOCUG00000011898	-	100	95.918	ENSRROG00000032589	EXOSC1	92	95.918	Rhinopithecus_roxellana
ENSOCUG00000011898	-	100	97.449	ENSSBOG00000000359	EXOSC1	100	97.449	Saimiri_boliviensis_boliviensis
ENSOCUG00000011898	-	75	95.270	ENSSHAG00000018219	EXOSC1	100	95.270	Sarcophilus_harrisii
ENSOCUG00000011898	-	98	81.250	ENSSFOG00015009069	exosc1	98	81.250	Scleropages_formosus
ENSOCUG00000011898	-	97	76.440	ENSSFOG00015016289	-	98	76.440	Scleropages_formosus
ENSOCUG00000011898	-	98	79.167	ENSSMAG00000003721	exosc1	98	79.167	Scophthalmus_maximus
ENSOCUG00000011898	-	98	79.167	ENSSDUG00000002993	exosc1	98	79.167	Seriola_dumerili
ENSOCUG00000011898	-	98	79.167	ENSSLDG00000025181	exosc1	98	79.167	Seriola_lalandi_dorsalis
ENSOCUG00000011898	-	100	83.673	ENSSARG00000000162	EXOSC1	100	83.673	Sorex_araneus
ENSOCUG00000011898	-	99	83.590	ENSSPUG00000012263	EXOSC1	99	83.590	Sphenodon_punctatus
ENSOCUG00000011898	-	98	70.312	ENSSPAG00000016792	exosc1	82	70.312	Stegastes_partitus
ENSOCUG00000011898	-	100	96.429	ENSSSCG00000010518	EXOSC1	91	96.429	Sus_scrofa
ENSOCUG00000011898	-	98	80.829	ENSTGUG00000009692	EXOSC1	99	80.829	Taeniopygia_guttata
ENSOCUG00000011898	-	97	72.632	ENSTRUG00000007706	exosc1	98	72.632	Takifugu_rubripes
ENSOCUG00000011898	-	97	72.539	ENSTNIG00000014079	exosc1	97	72.539	Tetraodon_nigroviridis
ENSOCUG00000011898	-	100	88.776	ENSTBEG00000006011	EXOSC1	100	88.776	Tupaia_belangeri
ENSOCUG00000011898	-	94	96.757	ENSTTRG00000009887	EXOSC1	100	96.757	Tursiops_truncatus
ENSOCUG00000011898	-	100	80.612	ENSUAMG00000010266	EXOSC1	100	80.612	Ursus_americanus
ENSOCUG00000011898	-	100	80.612	ENSUMAG00000022002	EXOSC1	100	80.612	Ursus_maritimus
ENSOCUG00000011898	-	100	97.449	ENSVVUG00000023192	EXOSC1	63	97.449	Vulpes_vulpes
ENSOCUG00000011898	-	98	78.238	ENSXETG00000003434	exosc1	99	78.238	Xenopus_tropicalis
ENSOCUG00000011898	-	62	84.298	ENSXCOG00000014499	exosc1	92	84.298	Xiphophorus_couchianus
ENSOCUG00000011898	-	98	66.321	ENSXMAG00000023382	exosc1	93	66.321	Xiphophorus_maculatus