EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000012859 (Gene tree)
Gene ID: 100328737
Gene Symbol: PRDM4
Alias: -
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 53918 bases
Position: chr4:88759567-88813484
Accession: 100328737
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000021480	zf-C2H2	PF00096.26	5.1e-14	1	3
ENSOCUP00000021480	zf-C2H2	PF00096.26	5.1e-14	2	3
ENSOCUP00000021480	zf-C2H2	PF00096.26	5.1e-14	3	3
ENSOCUP00000021480	zf-met	PF12874.7	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000029267	-	2449	XM_008257056	ENSOCUP00000021480	726 (aa)	XP_008255278	G1TWN4

Gene Model

Click here to download ENSOCUG00000012859's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000012859's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000012859	PRDM4	96	96.710	ENSG00000110851	PRDM4	95	100.000	Homo_sapiens
ENSOCUG00000012859	PRDM4	96	97.000	ENSAMEG00000016174	PRDM4	93	97.000	Ailuropoda_melanoleuca
ENSOCUG00000012859	PRDM4	96	87.840	ENSAPLG00000009846	PRDM4	94	87.840	Anas_platyrhynchos
ENSOCUG00000012859	PRDM4	96	96.710	ENSANAG00000024800	PRDM4	93	96.710	Aotus_nancymaae
ENSOCUG00000012859	PRDM4	96	97.282	ENSBTAG00000012999	PRDM4	93	97.282	Bos_taurus
ENSOCUG00000012859	PRDM4	96	96.280	ENSCJAG00000015261	PRDM4	93	96.280	Callithrix_jacchus
ENSOCUG00000012859	PRDM4	96	97.282	ENSCAFG00000001788	PRDM4	93	97.282	Canis_familiaris
ENSOCUG00000012859	PRDM4	96	97.282	ENSCAFG00020004916	PRDM4	93	97.282	Canis_lupus_dingo
ENSOCUG00000012859	PRDM4	96	96.853	ENSCHIG00000019409	PRDM4	93	96.853	Capra_hircus
ENSOCUG00000012859	PRDM4	96	96.853	ENSTSYG00000009248	PRDM4	93	96.853	Carlito_syrichta
ENSOCUG00000012859	PRDM4	96	92.990	ENSCAPG00000013937	PRDM4	93	92.990	Cavia_aperea
ENSOCUG00000012859	PRDM4	96	92.340	ENSCPOG00000022385	PRDM4	94	92.340	Cavia_porcellus
ENSOCUG00000012859	PRDM4	96	96.853	ENSCCAG00000036033	PRDM4	93	96.853	Cebus_capucinus
ENSOCUG00000012859	PRDM4	96	96.423	ENSCATG00000044797	PRDM4	93	96.423	Cercocebus_atys
ENSOCUG00000012859	PRDM4	96	93.059	ENSCLAG00000007545	PRDM4	94	93.343	Chinchilla_lanigera
ENSOCUG00000012859	PRDM4	96	96.567	ENSCSAG00000002896	PRDM4	93	96.567	Chlorocebus_sabaeus
ENSOCUG00000012859	PRDM4	64	98.113	ENSCHOG00000001744	PRDM4	75	98.113	Choloepus_hoffmanni
ENSOCUG00000012859	PRDM4	96	89.270	ENSCPBG00000023187	PRDM4	94	89.270	Chrysemys_picta_bellii
ENSOCUG00000012859	PRDM4	96	96.423	ENSCANG00000021804	PRDM4	93	96.423	Colobus_angolensis_palliatus
ENSOCUG00000012859	PRDM4	96	93.343	ENSCGRG00001015102	-	94	93.343	Cricetulus_griseus_chok1gshd
ENSOCUG00000012859	PRDM4	92	93.353	ENSCGRG00000004044	-	94	93.353	Cricetulus_griseus_crigri
ENSOCUG00000012859	PRDM4	96	96.110	ENSDNOG00000032478	PRDM4	99	96.110	Dasypus_novemcinctus
ENSOCUG00000012859	PRDM4	96	80.401	ENSDORG00000015081	-	93	80.401	Dipodomys_ordii
ENSOCUG00000012859	PRDM4	97	46.175	ENSEBUG00000003775	prdm4	98	46.348	Eptatretus_burgeri
ENSOCUG00000012859	PRDM4	96	97.854	ENSECAG00000015423	PRDM4	95	98.268	Equus_caballus
ENSOCUG00000012859	PRDM4	90	93.425	ENSEEUG00000006569	PRDM4	87	93.425	Erinaceus_europaeus
ENSOCUG00000012859	PRDM4	96	60.391	ENSELUG00000015265	prdm4	94	59.693	Esox_lucius
ENSOCUG00000012859	PRDM4	96	97.282	ENSFCAG00000022478	PRDM4	94	97.691	Felis_catus
ENSOCUG00000012859	PRDM4	96	88.698	ENSFALG00000013342	PRDM4	94	88.698	Ficedula_albicollis
ENSOCUG00000012859	PRDM4	96	87.874	ENSGALG00000012619	PRDM4	94	87.874	Gallus_gallus
ENSOCUG00000012859	PRDM4	96	88.841	ENSGAGG00000002763	PRDM4	89	88.841	Gopherus_agassizii
ENSOCUG00000012859	PRDM4	96	96.567	ENSGGOG00000001244	PRDM4	93	96.567	Gorilla_gorilla
ENSOCUG00000012859	PRDM4	96	96.567	ENSHGLG00000004590	PRDM4	92	96.567	Heterocephalus_glaber_female
ENSOCUG00000012859	PRDM4	96	95.332	ENSHGLG00100007464	PRDM4	94	95.332	Heterocephalus_glaber_male
ENSOCUG00000012859	PRDM4	97	59.229	ENSIPUG00000024162	prdm4	93	58.953	Ictalurus_punctatus
ENSOCUG00000012859	PRDM4	96	96.853	ENSSTOG00000016168	PRDM4	93	96.853	Ictidomys_tridecemlineatus
ENSOCUG00000012859	PRDM4	96	95.210	ENSJJAG00000022448	-	93	95.210	Jaculus_jaculus
ENSOCUG00000012859	PRDM4	96	74.074	ENSLACG00000007452	PRDM4	94	74.359	Latimeria_chalumnae
ENSOCUG00000012859	PRDM4	80	48.804	ENSLOCG00000017092	prdm4	99	48.804	Lepisosteus_oculatus
ENSOCUG00000012859	PRDM4	96	96.317	ENSLAFG00000001483	PRDM4	96	96.317	Loxodonta_africana
ENSOCUG00000012859	PRDM4	96	96.710	ENSMFAG00000041862	PRDM4	93	96.710	Macaca_fascicularis
ENSOCUG00000012859	PRDM4	96	96.710	ENSMMUG00000015550	PRDM4	93	96.710	Macaca_mulatta
ENSOCUG00000012859	PRDM4	96	96.710	ENSMNEG00000032319	PRDM4	93	96.710	Macaca_nemestrina
ENSOCUG00000012859	PRDM4	96	96.567	ENSMLEG00000039607	PRDM4	93	96.567	Mandrillus_leucophaeus
ENSOCUG00000012859	PRDM4	96	79.345	ENSMGAG00000012815	PRDM4	94	79.345	Meleagris_gallopavo
ENSOCUG00000012859	PRDM4	96	95.708	ENSMICG00000007807	PRDM4	93	95.708	Microcebus_murinus
ENSOCUG00000012859	PRDM4	96	94.134	ENSMOCG00000000753	Prdm4	93	94.134	Microtus_ochrogaster
ENSOCUG00000012859	PRDM4	96	94.993	ENSMUSG00000035529	Prdm4	94	94.993	Mus_musculus
ENSOCUG00000012859	PRDM4	96	94.278	MGP_PahariEiJ_G0031398	Prdm4	94	94.340	Mus_pahari
ENSOCUG00000012859	PRDM4	96	95.136	MGP_SPRETEiJ_G0016505	Prdm4	94	95.210	Mus_spretus
ENSOCUG00000012859	PRDM4	96	90.327	ENSMPUG00000012238	PRDM4	93	90.327	Mustela_putorius_furo
ENSOCUG00000012859	PRDM4	96	96.710	ENSMLUG00000000767	PRDM4	93	96.710	Myotis_lucifugus
ENSOCUG00000012859	PRDM4	96	95.708	ENSNGAG00000018627	Prdm4	94	95.708	Nannospalax_galili
ENSOCUG00000012859	PRDM4	96	96.567	ENSNLEG00000006748	PRDM4	93	96.567	Nomascus_leucogenys
ENSOCUG00000012859	PRDM4	85	92.355	ENSMEUG00000004495	PRDM4	83	92.355	Notamacropus_eugenii
ENSOCUG00000012859	PRDM4	84	97.479	ENSOPRG00000010192	PRDM4	82	97.479	Ochotona_princeps
ENSOCUG00000012859	PRDM4	96	91.273	ENSODEG00000014750	PRDM4	93	91.559	Octodon_degus
ENSOCUG00000012859	PRDM4	96	91.273	ENSOANG00000005526	PRDM4	95	91.273	Ornithorhynchus_anatinus
ENSOCUG00000012859	PRDM4	96	97.282	ENSOGAG00000011945	PRDM4	94	97.282	Otolemur_garnettii
ENSOCUG00000012859	PRDM4	96	96.710	ENSOARG00000017955	PRDM4	93	96.710	Ovis_aries
ENSOCUG00000012859	PRDM4	96	96.710	ENSPPAG00000038438	PRDM4	93	96.710	Pan_paniscus
ENSOCUG00000012859	PRDM4	96	97.282	ENSPPRG00000004144	PRDM4	93	97.282	Panthera_pardus
ENSOCUG00000012859	PRDM4	96	97.282	ENSPTIG00000005847	PRDM4	93	97.282	Panthera_tigris_altaica
ENSOCUG00000012859	PRDM4	96	96.853	ENSPTRG00000005400	PRDM4	93	96.853	Pan_troglodytes
ENSOCUG00000012859	PRDM4	96	96.710	ENSPANG00000022084	PRDM4	93	96.710	Papio_anubis
ENSOCUG00000012859	PRDM4	96	60.573	ENSPKIG00000000875	prdm4	93	60.573	Paramormyrops_kingsleyae
ENSOCUG00000012859	PRDM4	87	79.710	ENSPSIG00000012066	PRDM4	93	81.840	Pelodiscus_sinensis
ENSOCUG00000012859	PRDM4	96	95.279	ENSPEMG00000014598	Prdm4	94	95.279	Peromyscus_maniculatus_bairdii
ENSOCUG00000012859	PRDM4	96	90.000	ENSPCIG00000009471	PRDM4	93	90.000	Phascolarctos_cinereus
ENSOCUG00000012859	PRDM4	96	96.567	ENSPPYG00000004913	PRDM4	93	96.567	Pongo_abelii
ENSOCUG00000012859	PRDM4	78	96.154	ENSPCAG00000009987	PRDM4	76	96.154	Procavia_capensis
ENSOCUG00000012859	PRDM4	96	95.565	ENSPCOG00000021060	PRDM4	93	95.565	Propithecus_coquereli
ENSOCUG00000012859	PRDM4	96	96.853	ENSPVAG00000001596	PRDM4	93	96.853	Pteropus_vampyrus
ENSOCUG00000012859	PRDM4	96	95.279	ENSRNOG00000004962	Prdm4	93	95.279	Rattus_norvegicus
ENSOCUG00000012859	PRDM4	96	96.423	ENSRBIG00000035488	PRDM4	93	96.423	Rhinopithecus_bieti
ENSOCUG00000012859	PRDM4	96	96.567	ENSRROG00000012779	PRDM4	93	96.567	Rhinopithecus_roxellana
ENSOCUG00000012859	PRDM4	96	96.567	ENSSBOG00000000403	PRDM4	93	96.567	Saimiri_boliviensis_boliviensis
ENSOCUG00000012859	PRDM4	96	64.106	ENSSFOG00015023358	prdm4	94	63.687	Scleropages_formosus
ENSOCUG00000012859	PRDM4	96	97.425	ENSSSCG00000000160	PRDM4	93	97.425	Sus_scrofa
ENSOCUG00000012859	PRDM4	96	88.841	ENSTGUG00000010962	-	94	88.841	Taeniopygia_guttata
ENSOCUG00000012859	PRDM4	81	89.590	ENSTBEG00000001732	PRDM4	84	89.590	Tupaia_belangeri
ENSOCUG00000012859	PRDM4	96	97.282	ENSTTRG00000011056	PRDM4	93	97.282	Tursiops_truncatus
ENSOCUG00000012859	PRDM4	96	96.996	ENSUAMG00000022796	PRDM4	93	96.996	Ursus_americanus
ENSOCUG00000012859	PRDM4	96	96.996	ENSUMAG00000017231	PRDM4	93	96.996	Ursus_maritimus
ENSOCUG00000012859	PRDM4	96	97.282	ENSVPAG00000002215	PRDM4	94	97.282	Vicugna_pacos
ENSOCUG00000012859	PRDM4	96	97.282	ENSVVUG00000023397	PRDM4	93	97.282	Vulpes_vulpes