EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000012886 (Gene tree)
Gene ID: 100341361
Gene Symbol: SMG5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 25356 bases
Position: chr13:36592787-36618142
Accession: 100341361
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000011092	EST1	PF10374.9	1.7e-24	1	1
ENSOCUP00000011092	EST1_DNA_bind	PF10373.9	5.5e-41	1	2
ENSOCUP00000011092	EST1_DNA_bind	PF10373.9	5.5e-41	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000012887	SMG5-201	2979	XM_008264315	ENSOCUP00000011092	992 (aa)	XP_008262537	G1T4A1

Gene Model

Click here to download ENSOCUG00000012886's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000012886's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000012886	SMG5	90	40.442	ENSOCUG00000023338	-	97	40.221

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000012886	SMG5	100	95.565	ENSG00000198952	SMG5	98	95.565	Homo_sapiens
ENSOCUG00000012886	SMG5	100	67.402	ENSAPOG00000019690	smg5	98	66.700	Acanthochromis_polyacanthus
ENSOCUG00000012886	SMG5	100	92.246	ENSAMEG00000014458	SMG5	100	92.246	Ailuropoda_melanoleuca
ENSOCUG00000012886	SMG5	100	64.844	ENSACIG00000001353	smg5	98	66.503	Amphilophus_citrinellus
ENSOCUG00000012886	SMG5	100	64.688	ENSAOCG00000019483	smg5	93	66.905	Amphiprion_ocellaris
ENSOCUG00000012886	SMG5	100	66.135	ENSAPEG00000022949	smg5	98	66.534	Amphiprion_percula
ENSOCUG00000012886	SMG5	100	66.137	ENSATEG00000005348	smg5	98	66.963	Anabas_testudineus
ENSOCUG00000012886	SMG5	100	78.341	ENSAPLG00000010263	SMG5	100	77.951	Anas_platyrhynchos
ENSOCUG00000012886	SMG5	100	95.363	ENSANAG00000032899	SMG5	99	95.358	Aotus_nancymaae
ENSOCUG00000012886	SMG5	100	64.677	ENSACLG00000009311	smg5	98	65.782	Astatotilapia_calliptera
ENSOCUG00000012886	SMG5	100	94.859	ENSBTAG00000009435	SMG5	98	94.859	Bos_taurus
ENSOCUG00000012886	SMG5	99	43.992	ENSBTAG00000021747	-	97	43.227	Bos_taurus
ENSOCUG00000012886	SMG5	100	95.363	ENSCJAG00000005684	SMG5	98	95.363	Callithrix_jacchus
ENSOCUG00000012886	SMG5	100	93.851	ENSCAFG00000016839	SMG5	98	93.246	Canis_familiaris
ENSOCUG00000012886	SMG5	100	93.851	ENSCAFG00020006061	SMG5	98	93.246	Canis_lupus_dingo
ENSOCUG00000012886	SMG5	99	44.135	ENSCHIG00000006323	-	98	44.212	Capra_hircus
ENSOCUG00000012886	SMG5	100	94.859	ENSCHIG00000007709	SMG5	98	94.859	Capra_hircus
ENSOCUG00000012886	SMG5	100	95.670	ENSTSYG00000004099	SMG5	98	94.562	Carlito_syrichta
ENSOCUG00000012886	SMG5	99	73.022	ENSCAPG00000003631	SMG5	100	73.624	Cavia_aperea
ENSOCUG00000012886	SMG5	100	94.366	ENSCPOG00000015696	SMG5	98	94.064	Cavia_porcellus
ENSOCUG00000012886	SMG5	100	95.464	ENSCCAG00000027409	SMG5	99	95.459	Cebus_capucinus
ENSOCUG00000012886	SMG5	100	95.565	ENSCATG00000030539	SMG5	98	95.565	Cercocebus_atys
ENSOCUG00000012886	SMG5	100	95.372	ENSCLAG00000003983	SMG5	98	95.272	Chinchilla_lanigera
ENSOCUG00000012886	SMG5	100	95.464	ENSCSAG00000002120	SMG5	98	95.464	Chlorocebus_sabaeus
ENSOCUG00000012886	SMG5	56	91.606	ENSCHOG00000008741	-	57	91.606	Choloepus_hoffmanni
ENSOCUG00000012886	SMG5	96	78.195	ENSCPBG00000025848	SMG5	100	77.890	Chrysemys_picta_bellii
ENSOCUG00000012886	SMG5	94	34.755	ENSCING00000008706	-	97	34.995	Ciona_intestinalis
ENSOCUG00000012886	SMG5	100	91.331	ENSCANG00000029208	SMG5	98	91.331	Colobus_angolensis_palliatus
ENSOCUG00000012886	SMG5	100	92.153	ENSCGRG00001006336	Smg5	98	91.952	Cricetulus_griseus_chok1gshd
ENSOCUG00000012886	SMG5	100	92.153	ENSCGRG00000005111	Smg5	100	91.944	Cricetulus_griseus_crigri
ENSOCUG00000012886	SMG5	100	65.404	ENSCSEG00000014220	smg5	98	64.935	Cynoglossus_semilaevis
ENSOCUG00000012886	SMG5	100	60.697	ENSCVAG00000000529	smg5	97	61.310	Cyprinodon_variegatus
ENSOCUG00000012886	SMG5	100	90.927	ENSDNOG00000000051	SMG5	98	90.927	Dasypus_novemcinctus
ENSOCUG00000012886	SMG5	95	36.876	ENSDNOG00000039862	-	100	36.143	Dasypus_novemcinctus
ENSOCUG00000012886	SMG5	100	93.260	ENSDORG00000010382	Smg5	98	93.662	Dipodomys_ordii
ENSOCUG00000012886	SMG5	82	92.233	ENSETEG00000010336	SMG5	86	92.233	Echinops_telfairi
ENSOCUG00000012886	SMG5	93	46.865	ENSEBUG00000003739	smg5	98	47.078	Eptatretus_burgeri
ENSOCUG00000012886	SMG5	100	96.169	ENSEASG00005019122	SMG5	98	96.169	Equus_asinus_asinus
ENSOCUG00000012886	SMG5	100	96.169	ENSECAG00000001389	SMG5	98	96.169	Equus_caballus
ENSOCUG00000012886	SMG5	74	98.559	ENSEEUG00000012690	SMG5	74	98.559	Erinaceus_europaeus
ENSOCUG00000012886	SMG5	100	65.157	ENSELUG00000012585	smg5	98	65.059	Esox_lucius
ENSOCUG00000012886	SMG5	100	93.750	ENSFCAG00000011783	SMG5	98	93.152	Felis_catus
ENSOCUG00000012886	SMG5	59	83.250	ENSFALG00000001166	-	99	83.250	Ficedula_albicollis
ENSOCUG00000012886	SMG5	99	92.749	ENSFDAG00000017388	SMG5	100	92.649	Fukomys_damarensis
ENSOCUG00000012886	SMG5	99	62.462	ENSFHEG00000013939	smg5	95	68.827	Fundulus_heteroclitus
ENSOCUG00000012886	SMG5	100	61.448	ENSGMOG00000007310	smg5	90	77.295	Gadus_morhua
ENSOCUG00000012886	SMG5	100	77.897	ENSGALG00000029918	-	98	77.507	Gallus_gallus
ENSOCUG00000012886	SMG5	73	76.485	ENSGAFG00000021691	smg5	94	66.454	Gambusia_affinis
ENSOCUG00000012886	SMG5	100	79.183	ENSGAGG00000016131	SMG5	98	78.891	Gopherus_agassizii
ENSOCUG00000012886	SMG5	100	95.464	ENSGGOG00000010932	SMG5	98	95.464	Gorilla_gorilla
ENSOCUG00000012886	SMG5	100	64.293	ENSHBUG00000008654	smg5	98	64.917	Haplochromis_burtoni
ENSOCUG00000012886	SMG5	100	92.153	ENSHGLG00000019152	SMG5	98	92.354	Heterocephalus_glaber_female
ENSOCUG00000012886	SMG5	90	92.067	ENSHGLG00100015948	SMG5	97	92.291	Heterocephalus_glaber_male
ENSOCUG00000012886	SMG5	87	75.315	ENSHCOG00000010229	smg5	91	75.063	Hippocampus_comes
ENSOCUG00000012886	SMG5	100	61.688	ENSIPUG00000006624	Smg5	98	62.361	Ictalurus_punctatus
ENSOCUG00000012886	SMG5	100	95.565	ENSSTOG00000001780	SMG5	98	95.565	Ictidomys_tridecemlineatus
ENSOCUG00000012886	SMG5	100	92.161	ENSJJAG00000022763	Smg5	98	91.775	Jaculus_jaculus
ENSOCUG00000012886	SMG5	52	58.791	ENSKMAG00000014586	smg5	98	61.643	Kryptolebias_marmoratus
ENSOCUG00000012886	SMG5	100	66.010	ENSLBEG00000002145	smg5	98	65.320	Labrus_bergylta
ENSOCUG00000012886	SMG5	99	64.665	ENSLACG00000010521	SMG5	97	64.926	Latimeria_chalumnae
ENSOCUG00000012886	SMG5	99	94.753	ENSLAFG00000006241	SMG5	98	94.753	Loxodonta_africana
ENSOCUG00000012886	SMG5	100	95.665	ENSMFAG00000045357	SMG5	98	95.665	Macaca_fascicularis
ENSOCUG00000012886	SMG5	100	95.665	ENSMMUG00000000090	SMG5	98	95.665	Macaca_mulatta
ENSOCUG00000012886	SMG5	100	95.565	ENSMNEG00000044425	SMG5	98	95.565	Macaca_nemestrina
ENSOCUG00000012886	SMG5	100	89.056	ENSMLEG00000041192	SMG5	98	89.056	Mandrillus_leucophaeus
ENSOCUG00000012886	SMG5	64	58.584	ENSMZEG00005016543	smg5	100	58.220	Maylandia_zebra
ENSOCUG00000012886	SMG5	100	63.301	ENSMZEG00005015815	smg5	98	64.516	Maylandia_zebra
ENSOCUG00000012886	SMG5	100	91.449	ENSMAUG00000010381	Smg5	98	91.348	Mesocricetus_auratus
ENSOCUG00000012886	SMG5	100	95.766	ENSMICG00000002257	SMG5	98	95.766	Microcebus_murinus
ENSOCUG00000012886	SMG5	100	90.863	ENSMOCG00000016590	Smg5	98	90.663	Microtus_ochrogaster
ENSOCUG00000012886	SMG5	100	59.054	ENSMMOG00000017199	smg5	98	58.893	Mola_mola
ENSOCUG00000012886	SMG5	80	39.895	ENSMODG00000004735	-	86	40.000	Monodelphis_domestica
ENSOCUG00000012886	SMG5	87	89.583	ENSMODG00000016901	SMG5	96	90.046	Monodelphis_domestica
ENSOCUG00000012886	SMG5	99	34.791	ENSMODG00000004511	-	99	33.988	Monodelphis_domestica
ENSOCUG00000012886	SMG5	80	37.531	ENSMODG00000010675	-	85	37.337	Monodelphis_domestica
ENSOCUG00000012886	SMG5	94	37.317	ENSMODG00000004532	-	82	38.992	Monodelphis_domestica
ENSOCUG00000012886	SMG5	100	59.982	ENSMALG00000010375	smg5	98	60.290	Monopterus_albus
ENSOCUG00000012886	SMG5	100	91.952	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSOCUG00000012886	SMG5	100	92.052	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSOCUG00000012886	SMG5	100	91.759	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSOCUG00000012886	SMG5	100	91.952	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSOCUG00000012886	SMG5	96	92.526	ENSMPUG00000004546	SMG5	100	91.895	Mustela_putorius_furo
ENSOCUG00000012886	SMG5	100	93.387	ENSMLUG00000008518	SMG5	98	92.585	Myotis_lucifugus
ENSOCUG00000012886	SMG5	100	94.159	ENSNGAG00000020706	Smg5	98	94.159	Nannospalax_galili
ENSOCUG00000012886	SMG5	99	44.044	ENSNGAG00000012101	-	97	44.024	Nannospalax_galili
ENSOCUG00000012886	SMG5	97	62.986	ENSNBRG00000004332	smg5	96	64.821	Neolamprologus_brichardi
ENSOCUG00000012886	SMG5	100	95.262	ENSNLEG00000012439	SMG5	98	95.262	Nomascus_leucogenys
ENSOCUG00000012886	SMG5	100	87.513	ENSMEUG00000012834	SMG5	98	87.915	Notamacropus_eugenii
ENSOCUG00000012886	SMG5	100	95.363	ENSOPRG00000009152	SMG5	98	95.363	Ochotona_princeps
ENSOCUG00000012886	SMG5	100	94.456	ENSODEG00000012237	SMG5	98	94.456	Octodon_degus
ENSOCUG00000012886	SMG5	100	60.897	ENSORLG00000016239	smg5	98	62.408	Oryzias_latipes
ENSOCUG00000012886	SMG5	100	64.378	ENSORLG00020013127	smg5	98	65.308	Oryzias_latipes_hni
ENSOCUG00000012886	SMG5	100	64.385	ENSORLG00015019014	smg5	98	65.510	Oryzias_latipes_hsok
ENSOCUG00000012886	SMG5	82	60.639	ENSOMEG00000021330	smg5	90	61.080	Oryzias_melastigma
ENSOCUG00000012886	SMG5	100	94.254	ENSOGAG00000004966	SMG5	98	94.254	Otolemur_garnettii
ENSOCUG00000012886	SMG5	100	94.960	ENSOARG00000005778	SMG5	98	94.960	Ovis_aries
ENSOCUG00000012886	SMG5	99	43.948	ENSOARG00000011963	-	98	43.085	Ovis_aries
ENSOCUG00000012886	SMG5	100	95.565	ENSPPAG00000011996	SMG5	98	95.565	Pan_paniscus
ENSOCUG00000012886	SMG5	100	93.649	ENSPPRG00000011901	SMG5	100	93.044	Panthera_pardus
ENSOCUG00000012886	SMG5	99	86.646	ENSPTIG00000007892	SMG5	96	86.916	Panthera_tigris_altaica
ENSOCUG00000012886	SMG5	100	95.565	ENSPTRG00000049282	-	98	95.565	Pan_troglodytes
ENSOCUG00000012886	SMG5	100	95.565	ENSPTRG00000023925	SMG5	98	95.565	Pan_troglodytes
ENSOCUG00000012886	SMG5	100	95.565	ENSPANG00000011201	SMG5	98	95.565	Papio_anubis
ENSOCUG00000012886	SMG5	100	65.968	ENSPKIG00000009402	smg5	98	66.434	Paramormyrops_kingsleyae
ENSOCUG00000012886	SMG5	100	79.841	ENSPSIG00000015198	SMG5	100	79.643	Pelodiscus_sinensis
ENSOCUG00000012886	SMG5	100	60.169	ENSPMGG00000010465	smg5	98	59.718	Periophthalmus_magnuspinnatus
ENSOCUG00000012886	SMG5	100	92.052	ENSPEMG00000001819	Smg5	98	91.851	Peromyscus_maniculatus_bairdii
ENSOCUG00000012886	SMG5	57	46.032	ENSPEMG00000010022	-	94	44.637	Peromyscus_maniculatus_bairdii
ENSOCUG00000012886	SMG5	100	49.368	ENSPMAG00000000410	smg5	98	49.806	Petromyzon_marinus
ENSOCUG00000012886	SMG5	100	89.336	ENSPCIG00000018938	SMG5	98	89.738	Phascolarctos_cinereus
ENSOCUG00000012886	SMG5	100	66.112	ENSPMEG00000014105	smg5	98	66.374	Poecilia_mexicana
ENSOCUG00000012886	SMG5	93	70.048	ENSPREG00000017713	smg5	98	62.192	Poecilia_reticulata
ENSOCUG00000012886	SMG5	100	95.867	ENSPPYG00000000723	SMG5	98	95.867	Pongo_abelii
ENSOCUG00000012886	SMG5	71	99.441	ENSPCAG00000008412	SMG5	81	99.441	Procavia_capensis
ENSOCUG00000012886	SMG5	100	95.766	ENSPCOG00000004741	SMG5	98	95.766	Propithecus_coquereli
ENSOCUG00000012886	SMG5	100	86.290	ENSPVAG00000016748	SMG5	98	86.290	Pteropus_vampyrus
ENSOCUG00000012886	SMG5	100	59.302	ENSPNYG00000013397	smg5	98	61.011	Pundamilia_nyererei
ENSOCUG00000012886	SMG5	100	62.523	ENSPNAG00000028363	smg5	98	62.756	Pygocentrus_nattereri
ENSOCUG00000012886	SMG5	100	92.052	ENSRNOG00000019590	Smg5	98	91.851	Rattus_norvegicus
ENSOCUG00000012886	SMG5	100	95.262	ENSRBIG00000027428	SMG5	98	95.262	Rhinopithecus_bieti
ENSOCUG00000012886	SMG5	100	95.161	ENSRROG00000030035	SMG5	98	95.161	Rhinopithecus_roxellana
ENSOCUG00000012886	SMG5	100	95.665	ENSSBOG00000033339	SMG5	98	95.665	Saimiri_boliviensis_boliviensis
ENSOCUG00000012886	SMG5	88	40.106	ENSSHAG00000000561	-	85	40.106	Sarcophilus_harrisii
ENSOCUG00000012886	SMG5	65	39.766	ENSSHAG00000000935	-	91	40.854	Sarcophilus_harrisii
ENSOCUG00000012886	SMG5	99	34.132	ENSSHAG00000009572	-	76	44.652	Sarcophilus_harrisii
ENSOCUG00000012886	SMG5	100	88.288	ENSSHAG00000014163	SMG5	100	88.689	Sarcophilus_harrisii
ENSOCUG00000012886	SMG5	100	66.534	ENSSFOG00015024175	smg5	98	65.808	Scleropages_formosus
ENSOCUG00000012886	SMG5	100	60.360	ENSSMAG00000013059	smg5	98	61.608	Scophthalmus_maximus
ENSOCUG00000012886	SMG5	100	60.956	ENSSDUG00000007122	smg5	91	77.887	Seriola_dumerili
ENSOCUG00000012886	SMG5	100	61.267	ENSSLDG00000011418	smg5	91	78.660	Seriola_lalandi_dorsalis
ENSOCUG00000012886	SMG5	90	80.627	ENSSARG00000012484	SMG5	97	80.627	Sorex_araneus
ENSOCUG00000012886	SMG5	96	77.710	ENSSPUG00000002260	SMG5	100	77.204	Sphenodon_punctatus
ENSOCUG00000012886	SMG5	92	76.642	ENSSPAG00000014266	smg5	97	65.815	Stegastes_partitus
ENSOCUG00000012886	SMG5	99	74.470	ENSSSCG00000039308	-	97	74.369	Sus_scrofa
ENSOCUG00000012886	SMG5	100	96.573	ENSSSCG00000006490	-	100	96.421	Sus_scrofa
ENSOCUG00000012886	SMG5	100	80.180	ENSTGUG00000003748	-	98	80.180	Taeniopygia_guttata
ENSOCUG00000012886	SMG5	100	64.828	ENSTRUG00000012580	smg5	98	64.012	Takifugu_rubripes
ENSOCUG00000012886	SMG5	100	64.950	ENSTNIG00000010303	smg5	98	64.916	Tetraodon_nigroviridis
ENSOCUG00000012886	SMG5	59	99.015	ENSTBEG00000002777	SMG5	57	99.015	Tupaia_belangeri
ENSOCUG00000012886	SMG5	97	94.050	ENSTTRG00000001401	SMG5	94	94.050	Tursiops_truncatus
ENSOCUG00000012886	SMG5	100	93.145	ENSUAMG00000013721	SMG5	98	92.540	Ursus_americanus
ENSOCUG00000012886	SMG5	100	88.543	ENSUMAG00000018041	SMG5	97	87.940	Ursus_maritimus
ENSOCUG00000012886	SMG5	99	86.176	ENSVPAG00000009446	SMG5	99	86.176	Vicugna_pacos
ENSOCUG00000012886	SMG5	100	93.952	ENSVVUG00000005887	SMG5	98	93.246	Vulpes_vulpes
ENSOCUG00000012886	SMG5	78	65.448	ENSXETG00000033791	SMG5	99	64.817	Xenopus_tropicalis
ENSOCUG00000012886	SMG5	60	76.247	ENSXCOG00000004379	smg5	93	68.132	Xiphophorus_couchianus
ENSOCUG00000012886	SMG5	100	65.943	ENSXMAG00000013499	smg5	98	66.338	Xiphophorus_maculatus