EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000013006 (Gene tree)
Gene ID: 100339392
Gene Symbol: MBD4
Alias: -
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 16251 bases
Position: chr9:11111553-11127803
Accession: 100339392
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000011193	MBD	PF01429.19	1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000013003	MBD4-201	1743	XM_008260403	ENSOCUP00000011193	580 (aa)	XP_008258625	G1T4I6

Gene Model

Click here to download ENSOCUG00000013006's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000013006's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000013006	MBD4	100	69.125	ENSG00000129071	MBD4	99	80.435	Homo_sapiens
ENSOCUG00000013006	MBD4	86	37.721	ENSAPOG00000021668	mbd4	95	37.721	Acanthochromis_polyacanthus
ENSOCUG00000013006	MBD4	100	66.437	ENSAMEG00000004562	MBD4	99	66.437	Ailuropoda_melanoleuca
ENSOCUG00000013006	MBD4	86	38.933	ENSAOCG00000001157	mbd4	95	38.933	Amphiprion_ocellaris
ENSOCUG00000013006	MBD4	86	38.659	ENSAPEG00000016131	mbd4	95	38.659	Amphiprion_percula
ENSOCUG00000013006	MBD4	86	40.840	ENSACAG00000014733	MBD4	88	40.840	Anolis_carolinensis
ENSOCUG00000013006	MBD4	99	63.194	ENSBTAG00000021645	MBD4	100	63.194	Bos_taurus
ENSOCUG00000013006	MBD4	99	66.552	ENSCJAG00000017293	MBD4	99	66.552	Callithrix_jacchus
ENSOCUG00000013006	MBD4	99	64.828	ENSCAFG00000004867	MBD4	99	64.828	Canis_familiaris
ENSOCUG00000013006	MBD4	99	64.828	ENSCAFG00020007082	MBD4	99	64.828	Canis_lupus_dingo
ENSOCUG00000013006	MBD4	99	62.847	ENSCHIG00000009760	MBD4	100	62.847	Capra_hircus
ENSOCUG00000013006	MBD4	100	67.182	ENSCCAG00000029796	MBD4	99	67.182	Cebus_capucinus
ENSOCUG00000013006	MBD4	100	66.667	ENSCATG00000035211	MBD4	99	66.667	Cercocebus_atys
ENSOCUG00000013006	MBD4	99	61.872	ENSCLAG00000008974	MBD4	100	61.872	Chinchilla_lanigera
ENSOCUG00000013006	MBD4	100	67.010	ENSCSAG00000009037	MBD4	99	67.010	Chlorocebus_sabaeus
ENSOCUG00000013006	MBD4	86	47.876	ENSCPBG00000014704	MBD4	89	47.876	Chrysemys_picta_bellii
ENSOCUG00000013006	MBD4	100	67.354	ENSCANG00000007120	MBD4	99	67.354	Colobus_angolensis_palliatus
ENSOCUG00000013006	MBD4	99	58.925	ENSCGRG00001003507	Mbd4	100	58.925	Cricetulus_griseus_chok1gshd
ENSOCUG00000013006	MBD4	99	58.925	ENSCGRG00000010974	Mbd4	100	58.925	Cricetulus_griseus_crigri
ENSOCUG00000013006	MBD4	99	64.298	ENSDNOG00000049619	MBD4	100	64.298	Dasypus_novemcinctus
ENSOCUG00000013006	MBD4	81	55.745	ENSDORG00000000902	-	97	55.532	Dipodomys_ordii
ENSOCUG00000013006	MBD4	99	68.458	ENSEASG00005014800	MBD4	100	68.458	Equus_asinus_asinus
ENSOCUG00000013006	MBD4	99	68.284	ENSECAG00000022106	MBD4	100	68.284	Equus_caballus
ENSOCUG00000013006	MBD4	96	53.142	ENSEEUG00000011459	MBD4	99	53.142	Erinaceus_europaeus
ENSOCUG00000013006	MBD4	100	66.609	ENSFCAG00000000083	MBD4	99	66.609	Felis_catus
ENSOCUG00000013006	MBD4	82	39.959	ENSFALG00000013663	MBD4	99	40.157	Ficedula_albicollis
ENSOCUG00000013006	MBD4	86	48.162	ENSGAGG00000018644	MBD4	88	48.162	Gopherus_agassizii
ENSOCUG00000013006	MBD4	100	68.268	ENSGGOG00000010698	MBD4	99	68.268	Gorilla_gorilla
ENSOCUG00000013006	MBD4	99	63.085	ENSHGLG00000009034	MBD4	100	63.085	Heterocephalus_glaber_female
ENSOCUG00000013006	MBD4	99	63.258	ENSHGLG00100000135	MBD4	100	63.258	Heterocephalus_glaber_male
ENSOCUG00000013006	MBD4	99	63.605	ENSSTOG00000020663	MBD4	100	63.605	Ictidomys_tridecemlineatus
ENSOCUG00000013006	MBD4	85	41.683	ENSLOCG00000013054	MBD4	98	41.683	Lepisosteus_oculatus
ENSOCUG00000013006	MBD4	99	63.966	ENSLAFG00000010609	MBD4	99	63.966	Loxodonta_africana
ENSOCUG00000013006	MBD4	100	66.495	ENSMFAG00000002266	MBD4	99	66.495	Macaca_fascicularis
ENSOCUG00000013006	MBD4	100	66.267	ENSMMUG00000012723	MBD4	99	66.267	Macaca_mulatta
ENSOCUG00000013006	MBD4	96	65.179	ENSMNEG00000029752	MBD4	99	65.179	Macaca_nemestrina
ENSOCUG00000013006	MBD4	100	66.838	ENSMLEG00000024859	MBD4	99	66.838	Mandrillus_leucophaeus
ENSOCUG00000013006	MBD4	100	69.483	ENSMICG00000008022	MBD4	99	69.483	Microcebus_murinus
ENSOCUG00000013006	MBD4	67	44.020	ENSMOCG00000002466	-	97	44.020	Microtus_ochrogaster
ENSOCUG00000013006	MBD4	86	54.274	ENSMODG00000006399	-	99	54.274	Monodelphis_domestica
ENSOCUG00000013006	MBD4	86	39.258	ENSMALG00000021517	mbd4	87	39.258	Monopterus_albus
ENSOCUG00000013006	MBD4	99	58.925	MGP_CAROLIEiJ_G0028760	Mbd4	100	58.925	Mus_caroli
ENSOCUG00000013006	MBD4	99	58.681	ENSMUSG00000030322	Mbd4	100	58.681	Mus_musculus
ENSOCUG00000013006	MBD4	99	58.997	MGP_PahariEiJ_G0022511	-	100	58.997	Mus_pahari
ENSOCUG00000013006	MBD4	99	58.681	MGP_SPRETEiJ_G0029788	Mbd4	100	58.681	Mus_spretus
ENSOCUG00000013006	MBD4	99	63.731	ENSMPUG00000017195	MBD4	99	63.731	Mustela_putorius_furo
ENSOCUG00000013006	MBD4	92	69.288	ENSMLUG00000014766	MBD4	97	69.288	Myotis_lucifugus
ENSOCUG00000013006	MBD4	100	69.019	ENSNLEG00000005337	MBD4	99	69.019	Nomascus_leucogenys
ENSOCUG00000013006	MBD4	100	64.605	ENSOPRG00000000473	MBD4	99	64.605	Ochotona_princeps
ENSOCUG00000013006	MBD4	69	44.988	ENSOANG00000004589	-	93	44.988	Ornithorhynchus_anatinus
ENSOCUG00000013006	MBD4	51	65.896	ENSOMEG00000008819	mbd4	62	65.896	Oryzias_melastigma
ENSOCUG00000013006	MBD4	99	63.322	ENSOGAG00000010236	MBD4	100	63.322	Otolemur_garnettii
ENSOCUG00000013006	MBD4	99	63.194	ENSOARG00000014699	MBD4	100	63.194	Ovis_aries
ENSOCUG00000013006	MBD4	100	68.096	ENSPPAG00000036528	MBD4	99	68.096	Pan_paniscus
ENSOCUG00000013006	MBD4	100	66.093	ENSPPRG00000016480	MBD4	99	66.093	Panthera_pardus
ENSOCUG00000013006	MBD4	100	68.782	ENSPTRG00000015377	MBD4	99	68.782	Pan_troglodytes
ENSOCUG00000013006	MBD4	100	67.526	ENSPANG00000015047	MBD4	99	67.526	Papio_anubis
ENSOCUG00000013006	MBD4	86	39.243	ENSPKIG00000012306	MBD4	75	39.243	Paramormyrops_kingsleyae
ENSOCUG00000013006	MBD4	97	43.399	ENSPSIG00000007892	MBD4	99	43.399	Pelodiscus_sinensis
ENSOCUG00000013006	MBD4	94	50.733	ENSPEMG00000006226	Mbd4	99	51.642	Peromyscus_maniculatus_bairdii
ENSOCUG00000013006	MBD4	89	53.831	ENSPCIG00000002276	-	98	53.831	Phascolarctos_cinereus
ENSOCUG00000013006	MBD4	54	52.941	ENSPFOG00000014471	mbd4	72	52.941	Poecilia_formosa
ENSOCUG00000013006	MBD4	100	67.869	ENSPPYG00000013417	MBD4	99	67.869	Pongo_abelii
ENSOCUG00000013006	MBD4	95	61.802	ENSPCAG00000012915	MBD4	99	62.162	Procavia_capensis
ENSOCUG00000013006	MBD4	100	66.609	ENSPVAG00000005238	MBD4	99	66.609	Pteropus_vampyrus
ENSOCUG00000013006	MBD4	50	56.281	ENSPNAG00000000509	mbd4	65	56.281	Pygocentrus_nattereri
ENSOCUG00000013006	MBD4	99	56.822	ENSRNOG00000010919	Mbd4	100	56.822	Rattus_norvegicus
ENSOCUG00000013006	MBD4	100	67.526	ENSRBIG00000027722	MBD4	99	67.526	Rhinopithecus_bieti
ENSOCUG00000013006	MBD4	100	67.354	ENSRROG00000029136	MBD4	99	67.354	Rhinopithecus_roxellana
ENSOCUG00000013006	MBD4	99	66.897	ENSSBOG00000016810	MBD4	100	66.897	Saimiri_boliviensis_boliviensis
ENSOCUG00000013006	MBD4	93	53.297	ENSSHAG00000012953	MBD4	94	53.578	Sarcophilus_harrisii
ENSOCUG00000013006	MBD4	52	64.045	ENSSMAG00000013958	-	58	50.598	Scophthalmus_maximus
ENSOCUG00000013006	MBD4	50	59.322	ENSSDUG00000001365	mbd4	61	59.322	Seriola_dumerili
ENSOCUG00000013006	MBD4	81	52.979	ENSSARG00000004496	-	80	52.979	Sorex_araneus
ENSOCUG00000013006	MBD4	86	48.728	ENSSPUG00000017344	MBD4	91	48.728	Sphenodon_punctatus
ENSOCUG00000013006	MBD4	99	64.645	ENSSSCG00000033303	MBD4	100	64.645	Sus_scrofa
ENSOCUG00000013006	MBD4	85	32.364	ENSTNIG00000017927	mbd4	100	32.364	Tetraodon_nigroviridis
ENSOCUG00000013006	MBD4	82	53.401	ENSTBEG00000003041	-	82	53.401	Tupaia_belangeri
ENSOCUG00000013006	MBD4	93	67.904	ENSTTRG00000011265	MBD4	96	67.904	Tursiops_truncatus
ENSOCUG00000013006	MBD4	87	68.056	ENSUAMG00000000814	MBD4	100	68.056	Ursus_americanus
ENSOCUG00000013006	MBD4	99	66.724	ENSUMAG00000017542	MBD4	100	66.724	Ursus_maritimus
ENSOCUG00000013006	MBD4	56	92.000	ENSVPAG00000004040	-	59	92.000	Vicugna_pacos
ENSOCUG00000013006	MBD4	99	64.310	ENSVVUG00000014222	MBD4	99	64.310	Vulpes_vulpes