EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000013018 (Gene tree)
Gene ID: 100355820
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 264332 bases
Position: chr19:15859112-16123443
Accession: 100355820
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000011211	EST1	PF10374.9	3.5e-15	1	1
ENSOCUP00000011211	EST1_DNA_bind	PF10373.9	5.3e-60	1	1
ENSOCUP00000011211	PIN_4	PF13638.6	7.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000013021	SMG6-201	6527	XM_002718880	ENSOCUP00000011211	1420 (aa)	XP_002718926	G1T4K3

Gene Model

Click here to download ENSOCUG00000013018's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000013018's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000013018	SMG6	100	92.752	ENSG00000070366	SMG6	100	97.842	Homo_sapiens
ENSOCUG00000013018	SMG6	83	55.051	ENSAPOG00000019448	smg6	74	55.251	Acanthochromis_polyacanthus
ENSOCUG00000013018	SMG6	100	92.892	ENSAMEG00000007632	SMG6	100	92.752	Ailuropoda_melanoleuca
ENSOCUG00000013018	SMG6	98	49.509	ENSACIG00000012997	smg6	98	49.476	Amphilophus_citrinellus
ENSOCUG00000013018	SMG6	87	53.788	ENSAOCG00000002630	smg6	77	53.771	Amphiprion_ocellaris
ENSOCUG00000013018	SMG6	87	53.864	ENSAPEG00000019101	smg6	77	53.916	Amphiprion_percula
ENSOCUG00000013018	SMG6	86	53.974	ENSATEG00000006483	smg6	76	53.737	Anabas_testudineus
ENSOCUG00000013018	SMG6	87	56.625	ENSACAG00000011783	SMG6	99	57.689	Anolis_carolinensis
ENSOCUG00000013018	SMG6	100	92.892	ENSANAG00000035760	SMG6	100	92.681	Aotus_nancymaae
ENSOCUG00000013018	SMG6	71	59.171	ENSACLG00000005288	smg6	84	52.811	Astatotilapia_calliptera
ENSOCUG00000013018	SMG6	68	63.105	ENSAMXG00000017326	smg6	99	50.069	Astyanax_mexicanus
ENSOCUG00000013018	SMG6	100	92.400	ENSBTAG00000000267	SMG6	100	92.400	Bos_taurus
ENSOCUG00000013018	SMG6	100	92.681	ENSCJAG00000001820	SMG6	100	92.540	Callithrix_jacchus
ENSOCUG00000013018	SMG6	100	92.963	ENSCAFG00000019260	SMG6	100	92.822	Canis_familiaris
ENSOCUG00000013018	SMG6	100	92.963	ENSCAFG00020009770	SMG6	100	92.822	Canis_lupus_dingo
ENSOCUG00000013018	SMG6	100	92.400	ENSCHIG00000021998	SMG6	100	92.400	Capra_hircus
ENSOCUG00000013018	SMG6	100	92.963	ENSTSYG00000003406	SMG6	100	97.266	Carlito_syrichta
ENSOCUG00000013018	SMG6	98	77.443	ENSCAPG00000016197	SMG6	99	82.243	Cavia_aperea
ENSOCUG00000013018	SMG6	100	90.928	ENSCPOG00000014878	SMG6	100	90.928	Cavia_porcellus
ENSOCUG00000013018	SMG6	100	92.752	ENSCCAG00000035801	SMG6	100	92.752	Cebus_capucinus
ENSOCUG00000013018	SMG6	100	93.033	ENSCATG00000031956	SMG6	100	92.892	Cercocebus_atys
ENSOCUG00000013018	SMG6	100	92.892	ENSCLAG00000006748	SMG6	100	92.681	Chinchilla_lanigera
ENSOCUG00000013018	SMG6	100	93.385	ENSCSAG00000013800	SMG6	100	93.244	Chlorocebus_sabaeus
ENSOCUG00000013018	SMG6	57	97.015	ENSCHOG00000005024	-	73	97.015	Choloepus_hoffmanni
ENSOCUG00000013018	SMG6	100	72.349	ENSCPBG00000020369	SMG6	100	72.816	Chrysemys_picta_bellii
ENSOCUG00000013018	SMG6	98	92.955	ENSCANG00000031764	SMG6	100	97.070	Colobus_angolensis_palliatus
ENSOCUG00000013018	SMG6	55	89.003	ENSCGRG00001019595	Smg6	100	89.003	Cricetulus_griseus_chok1gshd
ENSOCUG00000013018	SMG6	98	85.457	ENSCGRG00000007782	Smg6	100	85.601	Cricetulus_griseus_crigri
ENSOCUG00000013018	SMG6	99	52.964	ENSCSEG00000012757	smg6	88	53.499	Cynoglossus_semilaevis
ENSOCUG00000013018	SMG6	72	57.466	ENSCVAG00000012789	smg6	74	53.468	Cyprinodon_variegatus
ENSOCUG00000013018	SMG6	95	54.980	ENSDARG00000100481	smg6	88	55.974	Danio_rerio
ENSOCUG00000013018	SMG6	100	92.259	ENSDNOG00000048283	SMG6	100	92.118	Dasypus_novemcinctus
ENSOCUG00000013018	SMG6	100	88.858	ENSDORG00000016614	Smg6	94	97.309	Dipodomys_ordii
ENSOCUG00000013018	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSOCUG00000013018	SMG6	68	50.684	ENSEBUG00000005059	smg6	68	49.021	Eptatretus_burgeri
ENSOCUG00000013018	SMG6	99	93.587	ENSEASG00005009318	SMG6	99	93.446	Equus_asinus_asinus
ENSOCUG00000013018	SMG6	99	93.305	ENSECAG00000006519	SMG6	99	93.164	Equus_caballus
ENSOCUG00000013018	SMG6	100	82.113	ENSEEUG00000003493	SMG6	100	81.972	Erinaceus_europaeus
ENSOCUG00000013018	SMG6	71	60.093	ENSELUG00000005934	smg6	67	56.053	Esox_lucius
ENSOCUG00000013018	SMG6	100	93.878	ENSFCAG00000028817	SMG6	100	93.737	Felis_catus
ENSOCUG00000013018	SMG6	98	71.459	ENSFALG00000006538	SMG6	100	71.530	Ficedula_albicollis
ENSOCUG00000013018	SMG6	100	92.465	ENSFDAG00000015106	SMG6	100	92.254	Fukomys_damarensis
ENSOCUG00000013018	SMG6	83	52.955	ENSFHEG00000013282	smg6	75	53.463	Fundulus_heteroclitus
ENSOCUG00000013018	SMG6	53	68.692	ENSGMOG00000019077	smg6	68	68.692	Gadus_morhua
ENSOCUG00000013018	SMG6	100	71.320	ENSGALG00000003108	SMG6	98	71.389	Gallus_gallus
ENSOCUG00000013018	SMG6	83	53.628	ENSGAFG00000000379	smg6	74	53.876	Gambusia_affinis
ENSOCUG00000013018	SMG6	91	53.715	ENSGACG00000020521	smg6	99	53.378	Gasterosteus_aculeatus
ENSOCUG00000013018	SMG6	98	71.773	ENSGAGG00000025617	SMG6	100	72.321	Gopherus_agassizii
ENSOCUG00000013018	SMG6	100	93.596	ENSGGOG00000017156	SMG6	100	93.385	Gorilla_gorilla
ENSOCUG00000013018	SMG6	89	52.557	ENSHBUG00000021311	smg6	78	53.299	Haplochromis_burtoni
ENSOCUG00000013018	SMG6	100	92.551	ENSHGLG00000012882	SMG6	100	92.340	Heterocephalus_glaber_female
ENSOCUG00000013018	SMG6	100	92.621	ENSHGLG00100017815	SMG6	100	92.410	Heterocephalus_glaber_male
ENSOCUG00000013018	SMG6	71	59.065	ENSHCOG00000008761	smg6	83	58.818	Hippocampus_comes
ENSOCUG00000013018	SMG6	87	53.858	ENSIPUG00000012493	smg6	78	53.612	Ictalurus_punctatus
ENSOCUG00000013018	SMG6	100	94.018	ENSSTOG00000028127	SMG6	100	93.807	Ictidomys_tridecemlineatus
ENSOCUG00000013018	SMG6	79	89.127	ENSJJAG00000015367	Smg6	95	86.926	Jaculus_jaculus
ENSOCUG00000013018	SMG6	85	53.634	ENSLBEG00000002184	smg6	75	53.764	Labrus_bergylta
ENSOCUG00000013018	SMG6	55	57.247	ENSLACG00000000806	-	98	58.946	Latimeria_chalumnae
ENSOCUG00000013018	SMG6	74	65.181	ENSLOCG00000006448	smg6	99	55.192	Lepisosteus_oculatus
ENSOCUG00000013018	SMG6	100	92.470	ENSLAFG00000001261	SMG6	100	92.329	Loxodonta_africana
ENSOCUG00000013018	SMG6	100	93.385	ENSMFAG00000003394	SMG6	100	93.244	Macaca_fascicularis
ENSOCUG00000013018	SMG6	100	93.455	ENSMMUG00000023161	SMG6	100	93.315	Macaca_mulatta
ENSOCUG00000013018	SMG6	100	88.545	ENSMNEG00000044592	SMG6	100	88.405	Macaca_nemestrina
ENSOCUG00000013018	SMG6	93	97.186	ENSMLEG00000029353	SMG6	100	96.623	Mandrillus_leucophaeus
ENSOCUG00000013018	SMG6	83	56.041	ENSMAMG00000020119	smg6	79	55.919	Mastacembelus_armatus
ENSOCUG00000013018	SMG6	71	59.191	ENSMZEG00005024736	smg6	78	53.116	Maylandia_zebra
ENSOCUG00000013018	SMG6	73	65.725	ENSMGAG00000005401	-	99	65.725	Meleagris_gallopavo
ENSOCUG00000013018	SMG6	100	94.792	ENSMICG00000012913	SMG6	100	94.581	Microcebus_murinus
ENSOCUG00000013018	SMG6	100	47.607	ENSMMOG00000010883	smg6	100	48.502	Mola_mola
ENSOCUG00000013018	SMG6	100	86.025	ENSMODG00000010622	SMG6	100	86.025	Monodelphis_domestica
ENSOCUG00000013018	SMG6	83	54.312	ENSMALG00000001106	smg6	73	55.253	Monopterus_albus
ENSOCUG00000013018	SMG6	100	91.766	MGP_CAROLIEiJ_G0016729	Smg6	100	91.626	Mus_caroli
ENSOCUG00000013018	SMG6	100	91.485	ENSMUSG00000038290	Smg6	100	91.344	Mus_musculus
ENSOCUG00000013018	SMG6	100	91.414	MGP_PahariEiJ_G0017866	Smg6	100	91.274	Mus_pahari
ENSOCUG00000013018	SMG6	100	91.485	MGP_SPRETEiJ_G0017572	Smg6	100	91.344	Mus_spretus
ENSOCUG00000013018	SMG6	100	93.033	ENSMPUG00000013046	SMG6	100	92.892	Mustela_putorius_furo
ENSOCUG00000013018	SMG6	100	92.259	ENSMLUG00000005739	SMG6	100	92.118	Myotis_lucifugus
ENSOCUG00000013018	SMG6	98	90.863	ENSNGAG00000007287	Smg6	100	90.863	Nannospalax_galili
ENSOCUG00000013018	SMG6	71	59.519	ENSNBRG00000009511	smg6	100	47.755	Neolamprologus_brichardi
ENSOCUG00000013018	SMG6	98	92.622	ENSNLEG00000017171	SMG6	100	97.461	Nomascus_leucogenys
ENSOCUG00000013018	SMG6	98	81.349	ENSMEUG00000015804	SMG6	100	81.133	Notamacropus_eugenii
ENSOCUG00000013018	SMG6	62	93.665	ENSOPRG00000000579	SMG6	85	98.947	Ochotona_princeps
ENSOCUG00000013018	SMG6	100	85.875	ENSODEG00000008038	SMG6	100	85.513	Octodon_degus
ENSOCUG00000013018	SMG6	100	50.907	ENSONIG00000005594	smg6	100	51.408	Oreochromis_niloticus
ENSOCUG00000013018	SMG6	83	54.367	ENSORLG00000003317	smg6	74	55.189	Oryzias_latipes
ENSOCUG00000013018	SMG6	83	54.452	ENSORLG00020015343	smg6	74	54.674	Oryzias_latipes_hni
ENSOCUG00000013018	SMG6	83	54.403	ENSORLG00015020454	smg6	74	54.973	Oryzias_latipes_hsok
ENSOCUG00000013018	SMG6	83	53.186	ENSOMEG00000010838	smg6	75	53.864	Oryzias_melastigma
ENSOCUG00000013018	SMG6	100	93.671	ENSOGAG00000004483	SMG6	100	93.460	Otolemur_garnettii
ENSOCUG00000013018	SMG6	100	90.436	ENSOARG00000015076	SMG6	100	91.997	Ovis_aries
ENSOCUG00000013018	SMG6	100	93.596	ENSPPAG00000043296	SMG6	100	93.385	Pan_paniscus
ENSOCUG00000013018	SMG6	100	93.948	ENSPPRG00000014581	SMG6	100	93.807	Panthera_pardus
ENSOCUG00000013018	SMG6	98	94.016	ENSPTIG00000008925	SMG6	100	97.852	Panthera_tigris_altaica
ENSOCUG00000013018	SMG6	100	93.737	ENSPTRG00000008544	SMG6	100	97.656	Pan_troglodytes
ENSOCUG00000013018	SMG6	100	93.103	ENSPANG00000024588	SMG6	100	92.963	Papio_anubis
ENSOCUG00000013018	SMG6	89	70.915	ENSPSIG00000006660	SMG6	96	70.837	Pelodiscus_sinensis
ENSOCUG00000013018	SMG6	98	60.536	ENSPMGG00000000844	smg6	100	60.536	Periophthalmus_magnuspinnatus
ENSOCUG00000013018	SMG6	100	92.817	ENSPEMG00000020707	Smg6	100	92.606	Peromyscus_maniculatus_bairdii
ENSOCUG00000013018	SMG6	100	50.430	ENSPFOG00000012035	smg6	100	50.937	Poecilia_formosa
ENSOCUG00000013018	SMG6	83	53.678	ENSPLAG00000017660	smg6	74	53.907	Poecilia_latipinna
ENSOCUG00000013018	SMG6	83	53.906	ENSPMEG00000000258	smg6	74	54.223	Poecilia_mexicana
ENSOCUG00000013018	SMG6	83	53.586	ENSPREG00000010066	smg6	74	53.798	Poecilia_reticulata
ENSOCUG00000013018	SMG6	100	87.992	ENSPPYG00000007790	SMG6	100	87.781	Pongo_abelii
ENSOCUG00000013018	SMG6	100	87.755	ENSPCAG00000000552	SMG6	100	87.755	Procavia_capensis
ENSOCUG00000013018	SMG6	100	94.300	ENSPCOG00000020925	SMG6	100	94.089	Propithecus_coquereli
ENSOCUG00000013018	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSOCUG00000013018	SMG6	89	54.087	ENSPNYG00000024151	smg6	83	54.552	Pundamilia_nyererei
ENSOCUG00000013018	SMG6	83	52.984	ENSPNAG00000015480	smg6	76	51.677	Pygocentrus_nattereri
ENSOCUG00000013018	SMG6	100	92.048	ENSRNOG00000003041	Smg6	100	91.907	Rattus_norvegicus
ENSOCUG00000013018	SMG6	100	93.244	ENSRBIG00000024746	SMG6	100	93.103	Rhinopithecus_bieti
ENSOCUG00000013018	SMG6	100	93.174	ENSRROG00000030423	SMG6	100	96.680	Rhinopithecus_roxellana
ENSOCUG00000013018	SMG6	100	92.752	ENSSBOG00000022518	SMG6	100	90.852	Saimiri_boliviensis_boliviensis
ENSOCUG00000013018	SMG6	98	85.172	ENSSHAG00000010045	SMG6	98	85.100	Sarcophilus_harrisii
ENSOCUG00000013018	SMG6	72	61.816	ENSSFOG00015005436	smg6	71	56.630	Scleropages_formosus
ENSOCUG00000013018	SMG6	83	55.116	ENSSMAG00000019777	smg6	99	54.609	Scophthalmus_maximus
ENSOCUG00000013018	SMG6	83	55.043	ENSSDUG00000016412	smg6	74	55.027	Seriola_dumerili
ENSOCUG00000013018	SMG6	80	54.170	ENSSLDG00000020747	smg6	77	54.082	Seriola_lalandi_dorsalis
ENSOCUG00000013018	SMG6	99	69.805	ENSSPUG00000007152	SMG6	99	69.874	Sphenodon_punctatus
ENSOCUG00000013018	SMG6	87	53.206	ENSSPAG00000015633	smg6	76	53.852	Stegastes_partitus
ENSOCUG00000013018	SMG6	100	92.616	ENSSSCG00000017826	SMG6	100	92.616	Sus_scrofa
ENSOCUG00000013018	SMG6	100	71.829	ENSTGUG00000005836	SMG6	100	71.899	Taeniopygia_guttata
ENSOCUG00000013018	SMG6	100	48.426	ENSTRUG00000000358	smg6	100	48.612	Takifugu_rubripes
ENSOCUG00000013018	SMG6	100	49.270	ENSTNIG00000016164	smg6	100	49.603	Tetraodon_nigroviridis
ENSOCUG00000013018	SMG6	100	89.374	ENSTBEG00000011424	SMG6	100	89.374	Tupaia_belangeri
ENSOCUG00000013018	SMG6	91	91.225	ENSTTRG00000001175	SMG6	91	90.772	Tursiops_truncatus
ENSOCUG00000013018	SMG6	100	93.118	ENSUAMG00000025152	SMG6	100	92.950	Ursus_americanus
ENSOCUG00000013018	SMG6	98	93.511	ENSUMAG00000009306	SMG6	100	93.367	Ursus_maritimus
ENSOCUG00000013018	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSOCUG00000013018	SMG6	100	92.822	ENSVVUG00000021727	SMG6	100	92.681	Vulpes_vulpes
ENSOCUG00000013018	SMG6	98	59.113	ENSXETG00000023799	SMG6	100	58.832	Xenopus_tropicalis
ENSOCUG00000013018	SMG6	83	53.672	ENSXMAG00000010321	smg6	74	54.062	Xiphophorus_maculatus