EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOCUG00000013505 (Gene tree)
Gene ID
100340648
Gene Symbol
CPSF6
Alias
-
Full Name
cleavage and polyadenylation specific factor 6
Gene Type
protein_coding
Species
Oryctolagus_cuniculus
Status
putative
Strand
Plus strand
Length
34040 bases
Position
chr4:48185045-48219084
Accession
100340648
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOCUP00000011614RRM_1PF00076.226.8e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOCUT00000013501CPSF6-2016821XM_002711322ENSOCUP00000011614588 (aa)XP_002711368G1T5I9
Gene Model
Click here to download ENSOCUG00000013505's gene model file
Pathways
Pathway IDPathway NameSource
ocu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000013505's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOCUG00000013505CPSF67249.537ENSOCUG00000024726CPSF77155.429
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOCUG00000013505CPSF66354.872ENSG00000149532CPSF79654.598Homo_sapiens
ENSOCUG00000013505CPSF6100100.000ENSG00000111605CPSF6100100.000Homo_sapiens
ENSOCUG00000013505CPSF610099.830ENSAMEG00000011781CPSF610099.830Ailuropoda_melanoleuca
ENSOCUG00000013505CPSF66139.698ENSAOCG00000012357CPSF77342.169Amphiprion_ocellaris
ENSOCUG00000013505CPSF697100.000ENSANAG00000019240CPSF699100.000Aotus_nancymaae
ENSOCUG00000013505CPSF66050.249ENSANAG00000024635CPSF76950.276Aotus_nancymaae
ENSOCUG00000013505CPSF65890.419ENSAMXG00000016745CPSF67589.091Astyanax_mexicanus
ENSOCUG00000013505CPSF610099.830ENSBTAG00000007323CPSF610099.830Bos_taurus
ENSOCUG00000013505CPSF66155.385ENSBTAG00000015263CPSF77155.429Bos_taurus
ENSOCUG00000013505CPSF66354.872ENSCJAG00000019282CPSF78454.857Callithrix_jacchus
ENSOCUG00000013505CPSF610099.830ENSCJAG00000001798CPSF6100100.000Callithrix_jacchus
ENSOCUG00000013505CPSF697100.000ENSCAFG00000000424CPSF6100100.000Canis_familiaris
ENSOCUG00000013505CPSF66155.385ENSCAFG00000016152CPSF77156.000Canis_familiaris
ENSOCUG00000013505CPSF6100100.000ENSCAFG00020016950CPSF6100100.000Canis_lupus_dingo
ENSOCUG00000013505CPSF66155.385ENSCAFG00020012753CPSF77156.000Canis_lupus_dingo
ENSOCUG00000013505CPSF610099.830ENSCHIG00000010792CPSF610099.830Capra_hircus
ENSOCUG00000013505CPSF66155.385ENSCHIG00000014655CPSF77155.429Capra_hircus
ENSOCUG00000013505CPSF697100.000ENSTSYG00000008591CPSF6100100.000Carlito_syrichta
ENSOCUG00000013505CPSF66155.385ENSTSYG00000010138-7156.000Carlito_syrichta
ENSOCUG00000013505CPSF65755.385ENSCAPG00000006384CPSF77056.000Cavia_aperea
ENSOCUG00000013505CPSF610099.660ENSCPOG00000015201CPSF610099.660Cavia_porcellus
ENSOCUG00000013505CPSF66155.385ENSCPOG00000009980CPSF77156.000Cavia_porcellus
ENSOCUG00000013505CPSF610099.830ENSCCAG00000028149CPSF610099.830Cebus_capucinus
ENSOCUG00000013505CPSF66154.872ENSCCAG00000032367CPSF77155.429Cebus_capucinus
ENSOCUG00000013505CPSF66354.872ENSCATG00000042801CPSF77755.429Cercocebus_atys
ENSOCUG00000013505CPSF6100100.000ENSCATG00000039288CPSF6100100.000Cercocebus_atys
ENSOCUG00000013505CPSF66155.385ENSCLAG00000003174CPSF77155.429Chinchilla_lanigera
ENSOCUG00000013505CPSF69799.648ENSCLAG00000010149CPSF610099.648Chinchilla_lanigera
ENSOCUG00000013505CPSF66354.872ENSCSAG00000006414CPSF77755.429Chlorocebus_sabaeus
ENSOCUG00000013505CPSF6100100.000ENSCSAG00000004232CPSF6100100.000Chlorocebus_sabaeus
ENSOCUG00000013505CPSF610091.837ENSCPBG00000013322CPSF610091.837Chrysemys_picta_bellii
ENSOCUG00000013505CPSF697100.000ENSCANG00000037294CPSF6100100.000Colobus_angolensis_palliatus
ENSOCUG00000013505CPSF6100100.000ENSCGRG00001018082Cpsf6100100.000Cricetulus_griseus_chok1gshd
ENSOCUG00000013505CPSF66155.897ENSCGRG00001020382Cpsf77157.714Cricetulus_griseus_chok1gshd
ENSOCUG00000013505CPSF697100.000ENSCGRG00000016909Cpsf6100100.000Cricetulus_griseus_crigri
ENSOCUG00000013505CPSF66654.378ENSCGRG00000017954Cpsf77757.714Cricetulus_griseus_crigri
ENSOCUG00000013505CPSF66635.874ENSCVAG00000007392CPSF75144.521Cyprinodon_variegatus
ENSOCUG00000013505CPSF66155.385ENSDNOG00000018517CPSF78455.429Dasypus_novemcinctus
ENSOCUG00000013505CPSF610093.209ENSDNOG00000015292CPSF610093.209Dasypus_novemcinctus
ENSOCUG00000013505CPSF697100.000ENSDORG00000002950Cpsf6100100.000Dipodomys_ordii
ENSOCUG00000013505CPSF610092.857ENSETEG00000002097CPSF610092.857Echinops_telfairi
ENSOCUG00000013505CPSF6100100.000ENSEASG00005008066CPSF6100100.000Equus_asinus_asinus
ENSOCUG00000013505CPSF66155.385ENSEASG00005008196CPSF77156.000Equus_asinus_asinus
ENSOCUG00000013505CPSF6100100.000ENSECAG00000015988CPSF6100100.000Equus_caballus
ENSOCUG00000013505CPSF66153.297ENSECAG00000018521CPSF79155.429Equus_caballus
ENSOCUG00000013505CPSF69799.296ENSEEUG00000015039CPSF610099.296Erinaceus_europaeus
ENSOCUG00000013505CPSF66155.385ENSFCAG00000013677CPSF79155.429Felis_catus
ENSOCUG00000013505CPSF610099.830ENSFCAG00000002855CPSF610099.830Felis_catus
ENSOCUG00000013505CPSF66053.763ENSFALG00000011927CPSF77656.395Ficedula_albicollis
ENSOCUG00000013505CPSF69791.754ENSFALG00000010157CPSF610091.754Ficedula_albicollis
ENSOCUG00000013505CPSF69798.951ENSFDAG00000002281CPSF69798.951Fukomys_damarensis
ENSOCUG00000013505CPSF66155.897ENSFDAG00000003919CPSF77156.000Fukomys_damarensis
ENSOCUG00000013505CPSF65092.500ENSGMOG00000012951cpsf65392.500Gadus_morhua
ENSOCUG00000013505CPSF65854.749ENSGALG00000040962CPSF76356.647Gallus_gallus
ENSOCUG00000013505CPSF610091.837ENSGAGG00000010228CPSF610091.837Gopherus_agassizii
ENSOCUG00000013505CPSF610099.830ENSGGOG00000008211CPSF610099.830Gorilla_gorilla
ENSOCUG00000013505CPSF610099.490ENSHGLG00000000792CPSF610099.490Heterocephalus_glaber_female
ENSOCUG00000013505CPSF66355.897ENSHGLG00000019090-7756.000Heterocephalus_glaber_female
ENSOCUG00000013505CPSF69799.472ENSHGLG00100013861CPSF610099.472Heterocephalus_glaber_male
ENSOCUG00000013505CPSF69898.621ENSSTOG00000014133CPSF610093.486Ictidomys_tridecemlineatus
ENSOCUG00000013505CPSF66155.385ENSSTOG00000007708CPSF77156.000Ictidomys_tridecemlineatus
ENSOCUG00000013505CPSF66355.385ENSJJAG00000019390Cpsf77756.000Jaculus_jaculus
ENSOCUG00000013505CPSF697100.000ENSJJAG00000014647Cpsf6100100.000Jaculus_jaculus
ENSOCUG00000013505CPSF65840.341ENSLBEG00000000947CPSF77236.571Labrus_bergylta
ENSOCUG00000013505CPSF65944.304ENSLACG00000005542CPSF77044.304Latimeria_chalumnae
ENSOCUG00000013505CPSF68855.897ENSLAFG00000032084CPSF77156.571Loxodonta_africana
ENSOCUG00000013505CPSF610093.707ENSLAFG00000030413CPSF610093.707Loxodonta_africana
ENSOCUG00000013505CPSF66154.872ENSMFAG00000001401CPSF77155.429Macaca_fascicularis
ENSOCUG00000013505CPSF610099.830ENSMFAG00000045318CPSF610099.830Macaca_fascicularis
ENSOCUG00000013505CPSF610099.830ENSMMUG00000002921CPSF610099.830Macaca_mulatta
ENSOCUG00000013505CPSF66354.872ENSMMUG00000015280CPSF77755.429Macaca_mulatta
ENSOCUG00000013505CPSF610099.830ENSMNEG00000036311CPSF6100100.000Macaca_nemestrina
ENSOCUG00000013505CPSF66354.872ENSMNEG00000029585CPSF77755.429Macaca_nemestrina
ENSOCUG00000013505CPSF697100.000ENSMLEG00000003957CPSF6100100.000Mandrillus_leucophaeus
ENSOCUG00000013505CPSF66154.872ENSMLEG00000031269CPSF76955.429Mandrillus_leucophaeus
ENSOCUG00000013505CPSF69642.308ENSMGAG00000004876CPSF76261.446Meleagris_gallopavo
ENSOCUG00000013505CPSF66155.385ENSMAUG00000013020Cpsf77156.000Mesocricetus_auratus
ENSOCUG00000013505CPSF6100100.000ENSMAUG00000013240Cpsf6100100.000Mesocricetus_auratus
ENSOCUG00000013505CPSF6100100.000ENSMICG00000007385-100100.000Microcebus_murinus
ENSOCUG00000013505CPSF66155.385ENSMICG00000013788CPSF77156.000Microcebus_murinus
ENSOCUG00000013505CPSF6100100.000ENSMOCG00000013982Cpsf6100100.000Microtus_ochrogaster
ENSOCUG00000013505CPSF66155.385ENSMOCG00000000072Cpsf77156.000Microtus_ochrogaster
ENSOCUG00000013505CPSF610093.027ENSMODG00000007123CPSF610093.027Monodelphis_domestica
ENSOCUG00000013505CPSF67090.155ENSMALG00000014908cpsf67891.525Monopterus_albus
ENSOCUG00000013505CPSF66155.385MGP_CAROLIEiJ_G0022690Cpsf77156.000Mus_caroli
ENSOCUG00000013505CPSF6100100.000MGP_CAROLIEiJ_G0015834Cpsf6100100.000Mus_caroli
ENSOCUG00000013505CPSF610099.660ENSMUSG00000055531Cpsf610099.660Mus_musculus
ENSOCUG00000013505CPSF66155.385ENSMUSG00000034820Cpsf77156.000Mus_musculus
ENSOCUG00000013505CPSF68299.688MGP_PahariEiJ_G0031253Cpsf69591.382Mus_pahari
ENSOCUG00000013505CPSF66155.385MGP_PahariEiJ_G0014184Cpsf77156.000Mus_pahari
ENSOCUG00000013505CPSF610099.660MGP_SPRETEiJ_G0016657Cpsf610099.660Mus_spretus
ENSOCUG00000013505CPSF66155.385MGP_SPRETEiJ_G0023604Cpsf77156.000Mus_spretus
ENSOCUG00000013505CPSF65754.359ENSMPUG00000014163CPSF76654.857Mustela_putorius_furo
ENSOCUG00000013505CPSF610089.134ENSMPUG00000017502CPSF610089.134Mustela_putorius_furo
ENSOCUG00000013505CPSF66355.385ENSMLUG00000013278CPSF77756.000Myotis_lucifugus
ENSOCUG00000013505CPSF69989.590ENSMLUG00000004172-10089.590Myotis_lucifugus
ENSOCUG00000013505CPSF66885.246ENSMLUG00000023960-8184.324Myotis_lucifugus
ENSOCUG00000013505CPSF67794.928ENSMLUG00000028728-9382.424Myotis_lucifugus
ENSOCUG00000013505CPSF66155.385ENSNGAG00000005031Cpsf77156.000Nannospalax_galili
ENSOCUG00000013505CPSF6100100.000ENSNGAG00000015901Cpsf6100100.000Nannospalax_galili
ENSOCUG00000013505CPSF610099.660ENSNLEG00000003798CPSF6100100.000Nomascus_leucogenys
ENSOCUG00000013505CPSF66154.872ENSNLEG00000002529CPSF76555.429Nomascus_leucogenys
ENSOCUG00000013505CPSF610096.599ENSMEUG00000015041CPSF69996.599Notamacropus_eugenii
ENSOCUG00000013505CPSF66153.646ENSMEUG00000002261CPSF77155.814Notamacropus_eugenii
ENSOCUG00000013505CPSF69799.472ENSOPRG00000005199CPSF610099.472Ochotona_princeps
ENSOCUG00000013505CPSF67599.197ENSODEG00000004418-9098.800Octodon_degus
ENSOCUG00000013505CPSF66153.030ENSODEG00000002610CPSF77155.618Octodon_degus
ENSOCUG00000013505CPSF610091.681ENSODEG00000018399-10091.681Octodon_degus
ENSOCUG00000013505CPSF67477.483ENSODEG00000007109-6676.101Octodon_degus
ENSOCUG00000013505CPSF67235.931ENSORLG00000006495CPSF76343.939Oryzias_latipes
ENSOCUG00000013505CPSF67136.087ENSORLG00020012657CPSF76641.667Oryzias_latipes_hni
ENSOCUG00000013505CPSF67235.931ENSORLG00015011091CPSF76343.939Oryzias_latipes_hsok
ENSOCUG00000013505CPSF66937.799ENSOMEG00000000539CPSF77838.235Oryzias_melastigma
ENSOCUG00000013505CPSF69791.053ENSOGAG00000031988CPSF610091.053Otolemur_garnettii
ENSOCUG00000013505CPSF66155.385ENSOGAG00000027958CPSF76656.000Otolemur_garnettii
ENSOCUG00000013505CPSF66155.385ENSOARG00000012937CPSF76455.429Ovis_aries
ENSOCUG00000013505CPSF69799.475ENSOARG00000020532CPSF610099.813Ovis_aries
ENSOCUG00000013505CPSF69796.853ENSPPAG00000005301CPSF69896.853Pan_paniscus
ENSOCUG00000013505CPSF66154.872ENSPPAG00000028232CPSF77055.429Pan_paniscus
ENSOCUG00000013505CPSF610099.830ENSPPRG00000021620CPSF610099.830Panthera_pardus
ENSOCUG00000013505CPSF66155.385ENSPPRG00000008538CPSF77156.000Panthera_pardus
ENSOCUG00000013505CPSF66155.385ENSPTIG00000021699CPSF77156.000Panthera_tigris_altaica
ENSOCUG00000013505CPSF69199.813ENSPTIG00000004079CPSF610099.813Panthera_tigris_altaica
ENSOCUG00000013505CPSF610099.830ENSPTRG00000005205CPSF610099.830Pan_troglodytes
ENSOCUG00000013505CPSF66154.872ENSPTRG00000003742CPSF77155.429Pan_troglodytes
ENSOCUG00000013505CPSF66154.872ENSPANG00000006037CPSF76855.429Papio_anubis
ENSOCUG00000013505CPSF6100100.000ENSPANG00000011641CPSF6100100.000Papio_anubis
ENSOCUG00000013505CPSF65747.458ENSPKIG00000018054CPSF77247.205Paramormyrops_kingsleyae
ENSOCUG00000013505CPSF65694.512ENSPSIG00000016360CPSF67694.512Pelodiscus_sinensis
ENSOCUG00000013505CPSF69799.824ENSPEMG00000007973Cpsf610099.824Peromyscus_maniculatus_bairdii
ENSOCUG00000013505CPSF66355.385ENSPEMG00000012648Cpsf77756.000Peromyscus_maniculatus_bairdii
ENSOCUG00000013505CPSF610099.320ENSPCIG00000019063CPSF610099.320Phascolarctos_cinereus
ENSOCUG00000013505CPSF66448.603ENSPCIG00000002551CPSF78455.191Phascolarctos_cinereus
ENSOCUG00000013505CPSF67785.263ENSPFOG00000006990cpsf65381.853Poecilia_formosa
ENSOCUG00000013505CPSF65573.765ENSPMEG00000001353cpsf65470.625Poecilia_mexicana
ENSOCUG00000013505CPSF610093.537ENSPPYG00000004756CPSF610093.537Pongo_abelii
ENSOCUG00000013505CPSF66154.872ENSPPYG00000003188CPSF77155.429Pongo_abelii
ENSOCUG00000013505CPSF6100100.000ENSPCAG00000011574CPSF6100100.000Procavia_capensis
ENSOCUG00000013505CPSF610099.660ENSPCOG00000024384CPSF610099.660Propithecus_coquereli
ENSOCUG00000013505CPSF66155.385ENSPCOG00000011976CPSF77156.000Propithecus_coquereli
ENSOCUG00000013505CPSF66155.385ENSPVAG00000010675CPSF77156.000Pteropus_vampyrus
ENSOCUG00000013505CPSF610099.490ENSPVAG00000015753CPSF610099.490Pteropus_vampyrus
ENSOCUG00000013505CPSF65146.497ENSPNAG00000015073CPSF76946.061Pygocentrus_nattereri
ENSOCUG00000013505CPSF66354.872ENSRNOG00000020668Cpsf77755.814Rattus_norvegicus
ENSOCUG00000013505CPSF610093.537ENSRNOG00000005927Cpsf610093.537Rattus_norvegicus
ENSOCUG00000013505CPSF610099.660ENSRBIG00000042827CPSF610099.660Rhinopithecus_bieti
ENSOCUG00000013505CPSF66354.872ENSRBIG00000031429CPSF79154.857Rhinopithecus_bieti
ENSOCUG00000013505CPSF66154.872ENSRROG00000045009CPSF77155.429Rhinopithecus_roxellana
ENSOCUG00000013505CPSF610099.830ENSRROG00000042758CPSF610099.830Rhinopithecus_roxellana
ENSOCUG00000013505CPSF69799.476ENSSBOG00000010652CPSF6100100.000Saimiri_boliviensis_boliviensis
ENSOCUG00000013505CPSF66154.872ENSSBOG00000018431CPSF77155.429Saimiri_boliviensis_boliviensis
ENSOCUG00000013505CPSF65179.139ENSSHAG00000006635CPSF69486.372Sarcophilus_harrisii
ENSOCUG00000013505CPSF66942.157ENSSFOG00015010288cpsf77840.000Scleropages_formosus
ENSOCUG00000013505CPSF69592.101ENSSARG00000006743CPSF69592.101Sorex_araneus
ENSOCUG00000013505CPSF66156.250ENSSPUG00000019344CPSF77356.977Sphenodon_punctatus
ENSOCUG00000013505CPSF66155.385ENSSSCG00000013083CPSF78455.429Sus_scrofa
ENSOCUG00000013505CPSF6100100.000ENSSSCG00000038031CPSF6100100.000Sus_scrofa
ENSOCUG00000013505CPSF65851.111ENSTGUG00000006513CPSF77156.322Taeniopygia_guttata
ENSOCUG00000013505CPSF69193.097ENSUAMG00000023492CPSF610093.097Ursus_americanus
ENSOCUG00000013505CPSF66155.385ENSUAMG00000017809CPSF77156.000Ursus_americanus
ENSOCUG00000013505CPSF66355.385ENSUMAG00000011825CPSF77756.000Ursus_maritimus
ENSOCUG00000013505CPSF691100.000ENSUMAG00000020779CPSF6100100.000Ursus_maritimus
ENSOCUG00000013505CPSF697100.000ENSVPAG00000008469CPSF6100100.000Vicugna_pacos
ENSOCUG00000013505CPSF691100.000ENSVVUG00000010156-100100.000Vulpes_vulpes
ENSOCUG00000013505CPSF66155.385ENSVVUG00000004939CPSF78455.429Vulpes_vulpes
ENSOCUG00000013505CPSF69740.000ENSXETG00000006715cpsf78534.672Xenopus_tropicalis

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