EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000015399 (Gene tree)
Gene ID: 100353471
Gene Symbol: LSM1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 12309 bases
Position: chrGL018706:5254966-5267274
Accession: 100353471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000013227	LSM	PF01423.22	1.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000015394	LSM1-201	402	-	ENSOCUP00000013227	133 (aa)	XP_002720830	G1T9C4

Gene Model

Click here to download ENSOCUG00000015399's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000015399's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000015399	LSM1	65	33.708	ENSOCUG00000017359	LSM8	92	33.708

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000015399	LSM1	100	100.000	ENSG00000175324	LSM1	100	100.000	Homo_sapiens
ENSOCUG00000015399	LSM1	100	85.714	ENSAPOG00000010833	lsm1	100	85.714	Acanthochromis_polyacanthus
ENSOCUG00000015399	LSM1	100	100.000	ENSAMEG00000011141	LSM1	100	100.000	Ailuropoda_melanoleuca
ENSOCUG00000015399	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSOCUG00000015399	LSM1	100	85.714	ENSAOCG00000017997	-	100	85.714	Amphiprion_ocellaris
ENSOCUG00000015399	LSM1	100	85.714	ENSAOCG00000017096	lsm1	100	85.714	Amphiprion_ocellaris
ENSOCUG00000015399	LSM1	100	85.714	ENSAPEG00000011669	lsm1	100	85.714	Amphiprion_percula
ENSOCUG00000015399	LSM1	100	84.211	ENSATEG00000022266	lsm1	100	84.211	Anabas_testudineus
ENSOCUG00000015399	LSM1	100	100.000	ENSANAG00000027785	LSM1	100	100.000	Aotus_nancymaae
ENSOCUG00000015399	LSM1	100	84.211	ENSACLG00000011400	lsm1	100	84.211	Astatotilapia_calliptera
ENSOCUG00000015399	LSM1	100	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSOCUG00000015399	LSM1	100	99.248	ENSBTAG00000001612	LSM1	100	99.248	Bos_taurus
ENSOCUG00000015399	LSM1	70	58.065	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSOCUG00000015399	LSM1	100	99.248	ENSCJAG00000048015	LSM1	100	99.248	Callithrix_jacchus
ENSOCUG00000015399	LSM1	100	100.000	ENSCAFG00000006113	LSM1	100	100.000	Canis_familiaris
ENSOCUG00000015399	LSM1	100	100.000	ENSCAFG00020001822	LSM1	100	100.000	Canis_lupus_dingo
ENSOCUG00000015399	LSM1	100	100.000	ENSCHIG00000013194	LSM1	100	100.000	Capra_hircus
ENSOCUG00000015399	LSM1	100	100.000	ENSTSYG00000010394	LSM1	100	100.000	Carlito_syrichta
ENSOCUG00000015399	LSM1	100	100.000	ENSCPOG00000032671	LSM1	100	100.000	Cavia_porcellus
ENSOCUG00000015399	LSM1	100	100.000	ENSCCAG00000037171	LSM1	100	100.000	Cebus_capucinus
ENSOCUG00000015399	LSM1	100	100.000	ENSCATG00000020377	LSM1	100	100.000	Cercocebus_atys
ENSOCUG00000015399	LSM1	100	98.496	ENSCLAG00000001137	LSM1	100	98.496	Chinchilla_lanigera
ENSOCUG00000015399	LSM1	100	100.000	ENSCSAG00000015485	LSM1	100	100.000	Chlorocebus_sabaeus
ENSOCUG00000015399	LSM1	100	99.248	ENSCHOG00000006030	LSM1	100	99.248	Choloepus_hoffmanni
ENSOCUG00000015399	LSM1	95	88.976	ENSCPBG00000006569	LSM1	86	88.976	Chrysemys_picta_bellii
ENSOCUG00000015399	LSM1	99	67.424	ENSCING00000013536	-	99	67.424	Ciona_intestinalis
ENSOCUG00000015399	LSM1	100	100.000	ENSCANG00000019173	LSM1	100	100.000	Colobus_angolensis_palliatus
ENSOCUG00000015399	LSM1	100	99.248	ENSCGRG00001024560	-	100	99.248	Cricetulus_griseus_chok1gshd
ENSOCUG00000015399	LSM1	80	81.982	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSOCUG00000015399	LSM1	80	81.982	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSOCUG00000015399	LSM1	100	99.248	ENSCGRG00000006554	-	100	99.248	Cricetulus_griseus_crigri
ENSOCUG00000015399	LSM1	100	83.459	ENSCSEG00000010570	lsm1	92	83.459	Cynoglossus_semilaevis
ENSOCUG00000015399	LSM1	100	82.707	ENSCSEG00000008319	lsm1	92	82.707	Cynoglossus_semilaevis
ENSOCUG00000015399	LSM1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
ENSOCUG00000015399	LSM1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSOCUG00000015399	LSM1	100	99.248	ENSDNOG00000032911	-	100	99.248	Dasypus_novemcinctus
ENSOCUG00000015399	LSM1	100	93.985	ENSDNOG00000030989	-	100	93.985	Dasypus_novemcinctus
ENSOCUG00000015399	LSM1	100	100.000	ENSDNOG00000046387	-	100	100.000	Dasypus_novemcinctus
ENSOCUG00000015399	LSM1	89	79.832	ENSDNOG00000046620	-	100	79.832	Dasypus_novemcinctus
ENSOCUG00000015399	LSM1	100	100.000	ENSDORG00000028172	Lsm1	100	100.000	Dipodomys_ordii
ENSOCUG00000015399	LSM1	93	63.710	FBgn0261067	LSm1	91	63.710	Drosophila_melanogaster
ENSOCUG00000015399	LSM1	100	98.496	ENSEASG00005016677	LSM1	100	98.496	Equus_asinus_asinus
ENSOCUG00000015399	LSM1	100	98.496	ENSECAG00000010461	LSM1	100	98.496	Equus_caballus
ENSOCUG00000015399	LSM1	100	69.925	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSOCUG00000015399	LSM1	100	84.211	ENSELUG00000023374	lsm1	100	84.211	Esox_lucius
ENSOCUG00000015399	LSM1	100	86.466	ENSELUG00000002322	lsm1	100	86.466	Esox_lucius
ENSOCUG00000015399	LSM1	100	100.000	ENSFCAG00000039335	LSM1	100	100.000	Felis_catus
ENSOCUG00000015399	LSM1	89	94.915	ENSFALG00000006723	LSM1	100	94.915	Ficedula_albicollis
ENSOCUG00000015399	LSM1	100	100.000	ENSFDAG00000007658	LSM1	100	100.000	Fukomys_damarensis
ENSOCUG00000015399	LSM1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
ENSOCUG00000015399	LSM1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
ENSOCUG00000015399	LSM1	100	93.233	ENSGALG00000003245	LSM1	100	93.233	Gallus_gallus
ENSOCUG00000015399	LSM1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
ENSOCUG00000015399	LSM1	100	84.211	ENSGACG00000011763	lsm1	98	84.211	Gasterosteus_aculeatus
ENSOCUG00000015399	LSM1	100	95.489	ENSGAGG00000024065	LSM1	100	95.489	Gopherus_agassizii
ENSOCUG00000015399	LSM1	100	100.000	ENSGGOG00000022658	LSM1	100	100.000	Gorilla_gorilla
ENSOCUG00000015399	LSM1	100	84.211	ENSHBUG00000010897	lsm1	100	84.211	Haplochromis_burtoni
ENSOCUG00000015399	LSM1	100	100.000	ENSHGLG00000005711	LSM1	100	100.000	Heterocephalus_glaber_female
ENSOCUG00000015399	LSM1	100	79.699	ENSHGLG00000017574	-	100	79.699	Heterocephalus_glaber_female
ENSOCUG00000015399	LSM1	100	79.699	ENSHGLG00100012152	-	100	79.699	Heterocephalus_glaber_male
ENSOCUG00000015399	LSM1	100	100.000	ENSHGLG00100017660	LSM1	100	100.000	Heterocephalus_glaber_male
ENSOCUG00000015399	LSM1	100	84.211	ENSHCOG00000017233	lsm1	100	84.211	Hippocampus_comes
ENSOCUG00000015399	LSM1	100	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSOCUG00000015399	LSM1	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSOCUG00000015399	LSM1	100	98.496	ENSJJAG00000014605	-	100	98.496	Jaculus_jaculus
ENSOCUG00000015399	LSM1	100	84.211	ENSKMAG00000003016	lsm1	100	84.211	Kryptolebias_marmoratus
ENSOCUG00000015399	LSM1	100	84.211	ENSLBEG00000022352	lsm1	100	84.211	Labrus_bergylta
ENSOCUG00000015399	LSM1	89	90.678	ENSLACG00000010947	LSM1	98	90.678	Latimeria_chalumnae
ENSOCUG00000015399	LSM1	100	94.737	ENSLOCG00000015149	lsm1	100	94.737	Lepisosteus_oculatus
ENSOCUG00000015399	LSM1	100	100.000	ENSLAFG00000003534	LSM1	100	100.000	Loxodonta_africana
ENSOCUG00000015399	LSM1	100	100.000	ENSMFAG00000032661	LSM1	100	100.000	Macaca_fascicularis
ENSOCUG00000015399	LSM1	100	100.000	ENSMLEG00000034535	LSM1	100	100.000	Mandrillus_leucophaeus
ENSOCUG00000015399	LSM1	100	84.211	ENSMAMG00000007464	lsm1	100	84.211	Mastacembelus_armatus
ENSOCUG00000015399	LSM1	100	84.211	ENSMZEG00005010321	lsm1	100	84.211	Maylandia_zebra
ENSOCUG00000015399	LSM1	100	93.233	ENSMGAG00000002125	LSM1	100	93.233	Meleagris_gallopavo
ENSOCUG00000015399	LSM1	100	99.248	ENSMICG00000030726	LSM1	100	99.248	Microcebus_murinus
ENSOCUG00000015399	LSM1	100	99.248	ENSMOCG00000022817	Lsm1	100	99.248	Microtus_ochrogaster
ENSOCUG00000015399	LSM1	100	84.962	ENSMMOG00000015466	lsm1	100	84.962	Mola_mola
ENSOCUG00000015399	LSM1	100	97.744	ENSMODG00000010732	-	100	97.744	Monodelphis_domestica
ENSOCUG00000015399	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSOCUG00000015399	LSM1	100	97.744	MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	Mus_caroli
ENSOCUG00000015399	LSM1	100	97.744	ENSMUSG00000037296	Lsm1	100	97.744	Mus_musculus
ENSOCUG00000015399	LSM1	100	97.744	MGP_PahariEiJ_G0021400	Lsm1	100	97.744	Mus_pahari
ENSOCUG00000015399	LSM1	100	97.744	MGP_SPRETEiJ_G0032049	Lsm1	100	97.744	Mus_spretus
ENSOCUG00000015399	LSM1	100	99.248	ENSMPUG00000009883	LSM1	100	99.248	Mustela_putorius_furo
ENSOCUG00000015399	LSM1	100	99.248	ENSMLUG00000003734	LSM1	100	99.248	Myotis_lucifugus
ENSOCUG00000015399	LSM1	100	99.248	ENSNGAG00000003753	Lsm1	100	99.248	Nannospalax_galili
ENSOCUG00000015399	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSOCUG00000015399	LSM1	100	100.000	ENSNLEG00000029390	LSM1	100	100.000	Nomascus_leucogenys
ENSOCUG00000015399	LSM1	100	97.744	ENSMEUG00000014077	LSM1	100	97.744	Notamacropus_eugenii
ENSOCUG00000015399	LSM1	88	94.017	ENSOPRG00000000333	LSM1	100	94.017	Ochotona_princeps
ENSOCUG00000015399	LSM1	100	100.000	ENSODEG00000004834	LSM1	100	100.000	Octodon_degus
ENSOCUG00000015399	LSM1	100	84.211	ENSONIG00000010782	lsm1	100	84.211	Oreochromis_niloticus
ENSOCUG00000015399	LSM1	100	96.992	ENSOANG00000003256	LSM1	100	96.992	Ornithorhynchus_anatinus
ENSOCUG00000015399	LSM1	100	85.714	ENSORLG00000030288	lsm1	100	85.714	Oryzias_latipes
ENSOCUG00000015399	LSM1	100	85.714	ENSORLG00020003941	lsm1	100	85.714	Oryzias_latipes_hni
ENSOCUG00000015399	LSM1	100	84.211	ENSORLG00020006213	-	86	84.211	Oryzias_latipes_hni
ENSOCUG00000015399	LSM1	100	85.714	ENSORLG00015018350	lsm1	100	85.714	Oryzias_latipes_hsok
ENSOCUG00000015399	LSM1	100	84.211	ENSOMEG00000012454	lsm1	100	84.211	Oryzias_melastigma
ENSOCUG00000015399	LSM1	100	100.000	ENSOGAG00000015161	LSM1	100	100.000	Otolemur_garnettii
ENSOCUG00000015399	LSM1	100	100.000	ENSOARG00000001317	LSM1	100	100.000	Ovis_aries
ENSOCUG00000015399	LSM1	100	100.000	ENSPPAG00000032279	LSM1	100	100.000	Pan_paniscus
ENSOCUG00000015399	LSM1	100	100.000	ENSPPRG00000014172	-	100	100.000	Panthera_pardus
ENSOCUG00000015399	LSM1	100	100.000	ENSPTIG00000010289	LSM1	100	100.000	Panthera_tigris_altaica
ENSOCUG00000015399	LSM1	100	100.000	ENSPTRG00000020169	LSM1	100	100.000	Pan_troglodytes
ENSOCUG00000015399	LSM1	100	100.000	ENSPANG00000008814	LSM1	100	100.000	Papio_anubis
ENSOCUG00000015399	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSOCUG00000015399	LSM1	100	82.707	ENSPKIG00000019409	LSM1	99	82.707	Paramormyrops_kingsleyae
ENSOCUG00000015399	LSM1	98	89.231	ENSPSIG00000012563	LSM1	99	89.231	Pelodiscus_sinensis
ENSOCUG00000015399	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSOCUG00000015399	LSM1	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSOCUG00000015399	LSM1	100	96.241	ENSPCIG00000008880	LSM1	100	96.241	Phascolarctos_cinereus
ENSOCUG00000015399	LSM1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
ENSOCUG00000015399	LSM1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
ENSOCUG00000015399	LSM1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
ENSOCUG00000015399	LSM1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
ENSOCUG00000015399	LSM1	100	100.000	ENSPPYG00000018521	LSM1	100	100.000	Pongo_abelii
ENSOCUG00000015399	LSM1	100	100.000	ENSPCOG00000020901	-	100	100.000	Propithecus_coquereli
ENSOCUG00000015399	LSM1	100	100.000	ENSPVAG00000006016	LSM1	100	100.000	Pteropus_vampyrus
ENSOCUG00000015399	LSM1	100	84.211	ENSPNYG00000018067	lsm1	100	84.211	Pundamilia_nyererei
ENSOCUG00000015399	LSM1	100	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSOCUG00000015399	LSM1	100	97.744	ENSRNOG00000015375	Lsm1	100	97.744	Rattus_norvegicus
ENSOCUG00000015399	LSM1	100	100.000	ENSRBIG00000027449	LSM1	100	100.000	Rhinopithecus_bieti
ENSOCUG00000015399	LSM1	100	100.000	ENSRROG00000036074	LSM1	100	100.000	Rhinopithecus_roxellana
ENSOCUG00000015399	LSM1	100	97.744	ENSSHAG00000017260	LSM1	100	97.744	Sarcophilus_harrisii
ENSOCUG00000015399	LSM1	100	91.729	ENSSFOG00015019528	lsm1	100	91.729	Scleropages_formosus
ENSOCUG00000015399	LSM1	100	84.211	ENSSMAG00000004930	lsm1	100	84.211	Scophthalmus_maximus
ENSOCUG00000015399	LSM1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
ENSOCUG00000015399	LSM1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
ENSOCUG00000015399	LSM1	100	95.489	ENSSPUG00000014878	LSM1	100	95.489	Sphenodon_punctatus
ENSOCUG00000015399	LSM1	100	84.962	ENSSPAG00000020548	lsm1	100	84.962	Stegastes_partitus
ENSOCUG00000015399	LSM1	100	98.496	ENSSSCG00000039058	LSM1	100	98.496	Sus_scrofa
ENSOCUG00000015399	LSM1	100	94.737	ENSTGUG00000004793	LSM1	100	94.737	Taeniopygia_guttata
ENSOCUG00000015399	LSM1	100	86.466	ENSTRUG00000025239	lsm1	100	86.466	Takifugu_rubripes
ENSOCUG00000015399	LSM1	100	86.466	ENSTNIG00000004055	lsm1	100	86.466	Tetraodon_nigroviridis
ENSOCUG00000015399	LSM1	88	97.436	ENSTBEG00000015884	LSM1	100	97.436	Tupaia_belangeri
ENSOCUG00000015399	LSM1	100	100.000	ENSTTRG00000004482	LSM1	100	100.000	Tursiops_truncatus
ENSOCUG00000015399	LSM1	100	100.000	ENSUAMG00000004103	LSM1	100	100.000	Ursus_americanus
ENSOCUG00000015399	LSM1	100	100.000	ENSUMAG00000009132	LSM1	100	100.000	Ursus_maritimus
ENSOCUG00000015399	LSM1	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSOCUG00000015399	LSM1	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSOCUG00000015399	LSM1	100	100.000	ENSVVUG00000020191	LSM1	100	100.000	Vulpes_vulpes
ENSOCUG00000015399	LSM1	100	92.701	ENSXETG00000009004	lsm1	100	92.701	Xenopus_tropicalis
ENSOCUG00000015399	LSM1	100	82.707	ENSXCOG00000015631	lsm1	100	82.707	Xiphophorus_couchianus
ENSOCUG00000015399	LSM1	100	82.707	ENSXMAG00000026637	lsm1	100	82.707	Xiphophorus_maculatus