EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000015734 (Gene tree)
Gene ID: 100340318
Gene Symbol: LIG4
Alias: -
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 2736 bases
Position: chr8:109976266-109979001
Accession: 100340318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000013516	RNA_ligase	PF09414.10	9.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000015731	LIG4-201	2736	XM_002713025	ENSOCUP00000013516	911 (aa)	XP_002713071	G1TA35

Gene Model

Click here to download ENSOCUG00000015734's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000015734's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000015734	LIG4	100	91.438	ENSG00000174405	LIG4	100	91.438	Homo_sapiens
ENSOCUG00000015734	LIG4	99	64.984	ENSAPOG00000000866	lig4	99	65.093	Acanthochromis_polyacanthus
ENSOCUG00000015734	LIG4	100	88.035	ENSAMEG00000019685	LIG4	99	88.035	Ailuropoda_melanoleuca
ENSOCUG00000015734	LIG4	99	65.567	ENSACIG00000018309	lig4	99	65.677	Amphilophus_citrinellus
ENSOCUG00000015734	LIG4	99	65.376	ENSAOCG00000011768	lig4	99	65.487	Amphiprion_ocellaris
ENSOCUG00000015734	LIG4	99	65.487	ENSAPEG00000017815	lig4	99	65.597	Amphiprion_percula
ENSOCUG00000015734	LIG4	99	64.615	ENSATEG00000005583	lig4	99	64.725	Anabas_testudineus
ENSOCUG00000015734	LIG4	97	74.545	ENSAPLG00000001673	LIG4	99	74.545	Anas_platyrhynchos
ENSOCUG00000015734	LIG4	99	74.365	ENSACAG00000014566	LIG4	99	74.365	Anolis_carolinensis
ENSOCUG00000015734	LIG4	100	90.231	ENSANAG00000012446	LIG4	100	90.231	Aotus_nancymaae
ENSOCUG00000015734	LIG4	99	64.906	ENSACLG00000027051	lig4	99	65.017	Astatotilapia_calliptera
ENSOCUG00000015734	LIG4	99	64.114	ENSAMXG00000008192	lig4	94	64.114	Astyanax_mexicanus
ENSOCUG00000015734	LIG4	100	88.364	ENSBTAG00000015868	LIG4	100	88.364	Bos_taurus
ENSOCUG00000015734	LIG4	100	89.243	ENSCJAG00000014689	LIG4	100	89.243	Callithrix_jacchus
ENSOCUG00000015734	LIG4	100	89.791	ENSCAFG00000006031	LIG4	100	89.791	Canis_familiaris
ENSOCUG00000015734	LIG4	100	89.791	ENSCAFG00020021230	LIG4	100	89.791	Canis_lupus_dingo
ENSOCUG00000015734	LIG4	100	87.816	ENSCHIG00000001019	LIG4	100	87.816	Capra_hircus
ENSOCUG00000015734	LIG4	99	86.932	ENSCAPG00000006284	LIG4	99	86.932	Cavia_aperea
ENSOCUG00000015734	LIG4	100	86.828	ENSCPOG00000014266	LIG4	100	86.828	Cavia_porcellus
ENSOCUG00000015734	LIG4	100	89.352	ENSCCAG00000019971	LIG4	100	89.352	Cebus_capucinus
ENSOCUG00000015734	LIG4	100	90.999	ENSCATG00000021075	LIG4	100	90.999	Cercocebus_atys
ENSOCUG00000015734	LIG4	100	89.023	ENSCLAG00000003376	LIG4	100	89.023	Chinchilla_lanigera
ENSOCUG00000015734	LIG4	100	90.999	ENSCSAG00000000211	LIG4	100	90.999	Chlorocebus_sabaeus
ENSOCUG00000015734	LIG4	99	77.594	ENSCPBG00000023291	LIG4	100	76.906	Chrysemys_picta_bellii
ENSOCUG00000015734	LIG4	68	45.238	ENSCING00000009536	-	96	45.238	Ciona_intestinalis
ENSOCUG00000015734	LIG4	83	45.419	ENSCSAVG00000010336	-	99	45.419	Ciona_savignyi
ENSOCUG00000015734	LIG4	100	91.218	ENSCANG00000005805	LIG4	100	91.218	Colobus_angolensis_palliatus
ENSOCUG00000015734	LIG4	100	86.952	ENSCGRG00001012072	Lig4	100	86.952	Cricetulus_griseus_chok1gshd
ENSOCUG00000015734	LIG4	100	86.952	ENSCGRG00000013417	Lig4	100	86.952	Cricetulus_griseus_crigri
ENSOCUG00000015734	LIG4	97	65.341	ENSCSEG00000013905	lig4	95	65.341	Cynoglossus_semilaevis
ENSOCUG00000015734	LIG4	99	64.895	ENSCVAG00000007896	lig4	99	64.895	Cyprinodon_variegatus
ENSOCUG00000015734	LIG4	99	63.858	ENSDARG00000060620	lig4	98	63.858	Danio_rerio
ENSOCUG00000015734	LIG4	100	89.254	ENSDNOG00000000513	LIG4	100	89.254	Dasypus_novemcinctus
ENSOCUG00000015734	LIG4	100	87.816	ENSDORG00000027303	Lig4	100	87.816	Dipodomys_ordii
ENSOCUG00000015734	LIG4	89	30.950	FBgn0030506	Lig4	91	30.950	Drosophila_melanogaster
ENSOCUG00000015734	LIG4	99	83.814	ENSETEG00000015563	LIG4	100	84.146	Echinops_telfairi
ENSOCUG00000015734	LIG4	99	43.127	ENSEBUG00000014243	lig4	99	43.127	Eptatretus_burgeri
ENSOCUG00000015734	LIG4	100	89.462	ENSEASG00005022073	LIG4	100	89.462	Equus_asinus_asinus
ENSOCUG00000015734	LIG4	100	89.023	ENSECAG00000003257	LIG4	100	89.023	Equus_caballus
ENSOCUG00000015734	LIG4	99	65.711	ENSELUG00000006787	lig4	99	65.821	Esox_lucius
ENSOCUG00000015734	LIG4	100	88.694	ENSFCAG00000031985	LIG4	100	88.694	Felis_catus
ENSOCUG00000015734	LIG4	89	74.047	ENSFALG00000004214	LIG4	98	74.047	Ficedula_albicollis
ENSOCUG00000015734	LIG4	100	88.804	ENSFDAG00000008973	LIG4	100	88.804	Fukomys_damarensis
ENSOCUG00000015734	LIG4	99	64.452	ENSFHEG00000007398	lig4	89	64.452	Fundulus_heteroclitus
ENSOCUG00000015734	LIG4	85	65.340	ENSGMOG00000012843	lig4	99	65.340	Gadus_morhua
ENSOCUG00000015734	LIG4	100	72.817	ENSGALG00000016854	LIG4	100	72.817	Gallus_gallus
ENSOCUG00000015734	LIG4	99	64.031	ENSGAFG00000019779	lig4	95	64.176	Gambusia_affinis
ENSOCUG00000015734	LIG4	99	62.791	ENSGACG00000014135	lig4	99	62.804	Gasterosteus_aculeatus
ENSOCUG00000015734	LIG4	100	91.328	ENSGGOG00000027771	LIG4	100	91.328	Gorilla_gorilla
ENSOCUG00000015734	LIG4	99	64.686	ENSHBUG00000006245	lig4	99	64.796	Haplochromis_burtoni
ENSOCUG00000015734	LIG4	100	88.694	ENSHGLG00000000718	LIG4	100	88.694	Heterocephalus_glaber_female
ENSOCUG00000015734	LIG4	100	88.694	ENSHGLG00100003265	LIG4	100	88.694	Heterocephalus_glaber_male
ENSOCUG00000015734	LIG4	99	64.176	ENSHCOG00000012010	lig4	99	64.176	Hippocampus_comes
ENSOCUG00000015734	LIG4	99	64.835	ENSIPUG00000013748	lig4	99	64.835	Ictalurus_punctatus
ENSOCUG00000015734	LIG4	100	89.352	ENSSTOG00000024303	LIG4	100	89.352	Ictidomys_tridecemlineatus
ENSOCUG00000015734	LIG4	100	87.157	ENSJJAG00000006750	Lig4	100	87.157	Jaculus_jaculus
ENSOCUG00000015734	LIG4	99	65.116	ENSKMAG00000001149	lig4	99	65.116	Kryptolebias_marmoratus
ENSOCUG00000015734	LIG4	91	65.505	ENSLBEG00000014578	lig4	100	65.625	Labrus_bergylta
ENSOCUG00000015734	LIG4	99	72.124	ENSLACG00000003282	LIG4	99	72.124	Latimeria_chalumnae
ENSOCUG00000015734	LIG4	99	69.846	ENSLOCG00000008901	lig4	98	69.846	Lepisosteus_oculatus
ENSOCUG00000015734	LIG4	100	87.185	ENSLAFG00000031152	LIG4	100	87.185	Loxodonta_africana
ENSOCUG00000015734	LIG4	100	91.109	ENSMFAG00000037235	LIG4	100	91.109	Macaca_fascicularis
ENSOCUG00000015734	LIG4	100	91.109	ENSMMUG00000008874	LIG4	100	91.109	Macaca_mulatta
ENSOCUG00000015734	LIG4	100	91.109	ENSMNEG00000023575	LIG4	100	91.109	Macaca_nemestrina
ENSOCUG00000015734	LIG4	100	90.889	ENSMLEG00000026720	LIG4	100	90.889	Mandrillus_leucophaeus
ENSOCUG00000015734	LIG4	99	65.495	ENSMAMG00000008472	lig4	99	65.604	Mastacembelus_armatus
ENSOCUG00000015734	LIG4	99	64.906	ENSMZEG00005001855	lig4	99	65.017	Maylandia_zebra
ENSOCUG00000015734	LIG4	99	73.655	ENSMGAG00000015532	LIG4	99	73.655	Meleagris_gallopavo
ENSOCUG00000015734	LIG4	100	84.523	ENSMOCG00000019000	Lig4	100	84.523	Microtus_ochrogaster
ENSOCUG00000015734	LIG4	99	64.341	ENSMMOG00000004390	lig4	99	64.341	Mola_mola
ENSOCUG00000015734	LIG4	100	83.425	ENSMODG00000025064	LIG4	100	83.425	Monodelphis_domestica
ENSOCUG00000015734	LIG4	99	64.563	ENSMALG00000008555	lig4	99	64.563	Monopterus_albus
ENSOCUG00000015734	LIG4	100	86.608	MGP_CAROLIEiJ_G0030809	Lig4	100	86.608	Mus_caroli
ENSOCUG00000015734	LIG4	100	86.279	ENSMUSG00000049717	Lig4	100	86.279	Mus_musculus
ENSOCUG00000015734	LIG4	100	86.389	MGP_PahariEiJ_G0021270	Lig4	100	86.389	Mus_pahari
ENSOCUG00000015734	LIG4	100	86.498	MGP_SPRETEiJ_G0031917	Lig4	100	86.498	Mus_spretus
ENSOCUG00000015734	LIG4	100	87.816	ENSMPUG00000018675	LIG4	100	87.816	Mustela_putorius_furo
ENSOCUG00000015734	LIG4	100	88.913	ENSMLUG00000001267	LIG4	100	88.913	Myotis_lucifugus
ENSOCUG00000015734	LIG4	100	87.486	ENSNGAG00000013258	Lig4	100	87.486	Nannospalax_galili
ENSOCUG00000015734	LIG4	99	64.686	ENSNBRG00000021252	lig4	99	64.796	Neolamprologus_brichardi
ENSOCUG00000015734	LIG4	100	90.889	ENSNLEG00000007888	LIG4	100	90.889	Nomascus_leucogenys
ENSOCUG00000015734	LIG4	100	91.109	ENSOPRG00000005765	LIG4	100	91.109	Ochotona_princeps
ENSOCUG00000015734	LIG4	100	87.157	ENSODEG00000019683	LIG4	100	87.157	Octodon_degus
ENSOCUG00000015734	LIG4	99	65.017	ENSONIG00000011969	lig4	98	65.127	Oreochromis_niloticus
ENSOCUG00000015734	LIG4	99	63.925	ENSORLG00000004041	lig4	99	63.925	Oryzias_latipes
ENSOCUG00000015734	LIG4	99	64.145	ENSORLG00020019607	lig4	99	64.145	Oryzias_latipes_hni
ENSOCUG00000015734	LIG4	99	64.035	ENSORLG00015017754	lig4	99	64.035	Oryzias_latipes_hsok
ENSOCUG00000015734	LIG4	74	69.083	ENSOMEG00000003459	lig4	98	69.083	Oryzias_melastigma
ENSOCUG00000015734	LIG4	100	89.474	ENSOGAG00000032120	LIG4	99	89.474	Otolemur_garnettii
ENSOCUG00000015734	LIG4	82	89.396	ENSOARG00000005590	LIG4	98	89.396	Ovis_aries
ENSOCUG00000015734	LIG4	100	90.999	ENSPPAG00000032998	LIG4	100	90.999	Pan_paniscus
ENSOCUG00000015734	LIG4	100	89.133	ENSPPRG00000017804	LIG4	100	89.133	Panthera_pardus
ENSOCUG00000015734	LIG4	100	88.913	ENSPTIG00000010051	LIG4	100	88.913	Panthera_tigris_altaica
ENSOCUG00000015734	LIG4	100	91.109	ENSPTRG00000006025	LIG4	100	91.109	Pan_troglodytes
ENSOCUG00000015734	LIG4	100	91.109	ENSPANG00000007562	LIG4	100	91.109	Papio_anubis
ENSOCUG00000015734	LIG4	99	65.604	ENSPKIG00000011645	lig4	98	65.604	Paramormyrops_kingsleyae
ENSOCUG00000015734	LIG4	99	77.253	ENSPSIG00000001504	LIG4	99	77.253	Pelodiscus_sinensis
ENSOCUG00000015734	LIG4	99	62.444	ENSPMGG00000013486	lig4	99	62.171	Periophthalmus_magnuspinnatus
ENSOCUG00000015734	LIG4	100	86.294	ENSPEMG00000000076	Lig4	100	86.294	Peromyscus_maniculatus_bairdii
ENSOCUG00000015734	LIG4	100	82.566	ENSPCIG00000021882	LIG4	100	82.566	Phascolarctos_cinereus
ENSOCUG00000015734	LIG4	99	64.405	ENSPFOG00000000797	lig4	99	64.066	Poecilia_formosa
ENSOCUG00000015734	LIG4	99	64.294	ENSPLAG00000001196	lig4	99	63.956	Poecilia_latipinna
ENSOCUG00000015734	LIG4	99	64.405	ENSPMEG00000021353	lig4	99	64.286	Poecilia_mexicana
ENSOCUG00000015734	LIG4	99	64.182	ENSPREG00000007323	lig4	99	63.846	Poecilia_reticulata
ENSOCUG00000015734	LIG4	100	91.328	ENSPPYG00000005540	LIG4	100	91.328	Pongo_abelii
ENSOCUG00000015734	LIG4	100	88.584	ENSPVAG00000016403	LIG4	100	88.584	Pteropus_vampyrus
ENSOCUG00000015734	LIG4	99	64.796	ENSPNYG00000009660	lig4	99	64.906	Pundamilia_nyererei
ENSOCUG00000015734	LIG4	100	64.145	ENSPNAG00000028056	lig4	100	64.145	Pygocentrus_nattereri
ENSOCUG00000015734	LIG4	100	64.145	ENSPNAG00000028069	LIG4	100	64.145	Pygocentrus_nattereri
ENSOCUG00000015734	LIG4	100	85.510	ENSRNOG00000014605	Lig4	100	85.510	Rattus_norvegicus
ENSOCUG00000015734	LIG4	100	89.901	ENSRBIG00000039962	LIG4	100	89.901	Rhinopithecus_bieti
ENSOCUG00000015734	LIG4	100	91.109	ENSRROG00000006040	LIG4	100	91.109	Rhinopithecus_roxellana
ENSOCUG00000015734	LIG4	100	89.682	ENSSBOG00000019029	LIG4	100	89.682	Saimiri_boliviensis_boliviensis
ENSOCUG00000015734	LIG4	100	79.144	ENSSHAG00000009525	LIG4	100	79.605	Sarcophilus_harrisii
ENSOCUG00000015734	LIG4	100	64.738	ENSSFOG00015012835	lig4	100	64.738	Scleropages_formosus
ENSOCUG00000015734	LIG4	99	62.680	ENSSMAG00000011267	lig4	99	62.680	Scophthalmus_maximus
ENSOCUG00000015734	LIG4	99	65.965	ENSSDUG00000010343	lig4	98	65.965	Seriola_dumerili
ENSOCUG00000015734	LIG4	99	64.120	ENSSLDG00000003239	lig4	99	64.120	Seriola_lalandi_dorsalis
ENSOCUG00000015734	LIG4	100	82.385	ENSSARG00000006573	LIG4	100	82.385	Sorex_araneus
ENSOCUG00000015734	LIG4	93	76.066	ENSSPUG00000002444	LIG4	100	76.066	Sphenodon_punctatus
ENSOCUG00000015734	LIG4	99	64.945	ENSSPAG00000001609	lig4	99	64.945	Stegastes_partitus
ENSOCUG00000015734	LIG4	100	87.925	ENSSSCG00000009540	LIG4	100	87.925	Sus_scrofa
ENSOCUG00000015734	LIG4	99	73.341	ENSTGUG00000010795	LIG4	99	73.341	Taeniopygia_guttata
ENSOCUG00000015734	LIG4	99	64.673	ENSTRUG00000009984	lig4	99	64.673	Takifugu_rubripes
ENSOCUG00000015734	LIG4	99	64.505	ENSTNIG00000010348	lig4	99	64.725	Tetraodon_nigroviridis
ENSOCUG00000015734	LIG4	100	90.670	ENSTBEG00000017741	LIG4	100	90.670	Tupaia_belangeri
ENSOCUG00000015734	LIG4	100	89.023	ENSTTRG00000012660	LIG4	100	89.023	Tursiops_truncatus
ENSOCUG00000015734	LIG4	100	88.035	ENSUAMG00000003773	LIG4	100	88.035	Ursus_americanus
ENSOCUG00000015734	LIG4	99	70.485	ENSXETG00000002654	lig4	99	70.485	Xenopus_tropicalis
ENSOCUG00000015734	LIG4	99	64.071	ENSXCOG00000017401	lig4	99	63.736	Xiphophorus_couchianus
ENSOCUG00000015734	LIG4	99	64.444	ENSXMAG00000015142	lig4	99	64.105	Xiphophorus_maculatus