EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000016478 (Gene tree)
Gene ID: 100354266
Gene Symbol: -
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 89169 bases
Position: chr3:110005882-110095050
Accession: 100354266
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000014166	ResIII	PF04851.15	7.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000016480	-	3682	XM_002710575	ENSOCUP00000014166	911 (aa)	XP_002710621	G1TBQ4

Gene Model

Click here to download ENSOCUG00000016478's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000016478's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000016478	-	68	45.950	ENSOCUG00000005229	RAD54L	84	45.950
ENSOCUG00000016478	-	55	30.109	ENSOCUG00000026731	HELLS	63	30.109
ENSOCUG00000016478	-	59	31.491	ENSOCUG00000000442	-	83	31.650

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000016478	-	99	85.824	ENSG00000197275	RAD54B	99	85.824	Homo_sapiens
ENSOCUG00000016478	-	80	90.345	ENSG00000265817	FSBP	99	90.345	Homo_sapiens
ENSOCUG00000016478	-	99	83.662	ENSAMEG00000005834	-	100	83.662	Ailuropoda_melanoleuca
ENSOCUG00000016478	-	99	54.506	ENSACIG00000013005	rad54b	99	54.506	Amphilophus_citrinellus
ENSOCUG00000016478	-	99	55.638	ENSAOCG00000008523	rad54b	99	55.638	Amphiprion_ocellaris
ENSOCUG00000016478	-	99	54.645	ENSAPEG00000001673	rad54b	99	54.863	Amphiprion_percula
ENSOCUG00000016478	-	99	54.180	ENSATEG00000001527	rad54b	99	54.180	Anabas_testudineus
ENSOCUG00000016478	-	99	67.067	ENSAPLG00000014366	-	99	67.067	Anas_platyrhynchos
ENSOCUG00000016478	-	87	69.444	ENSACAG00000003671	-	99	69.444	Anolis_carolinensis
ENSOCUG00000016478	-	71	87.500	ENSANAG00000019528	-	99	87.500	Aotus_nancymaae
ENSOCUG00000016478	-	99	54.585	ENSACLG00000007826	rad54b	99	54.585	Astatotilapia_calliptera
ENSOCUG00000016478	-	85	58.651	ENSAMXG00000039985	rad54b	95	58.469	Astyanax_mexicanus
ENSOCUG00000016478	-	99	82.547	ENSBTAG00000000632	RAD54B	100	82.547	Bos_taurus
ENSOCUG00000016478	-	79	34.529	WBGene00013792	Y116A8C.13	95	33.136	Caenorhabditis_elegans
ENSOCUG00000016478	-	99	84.396	ENSCJAG00000000080	-	99	88.828	Callithrix_jacchus
ENSOCUG00000016478	-	99	82.237	ENSCAFG00000009179	RAD54B	99	82.237	Canis_familiaris
ENSOCUG00000016478	-	99	82.127	ENSCAFG00020012084	-	99	82.127	Canis_lupus_dingo
ENSOCUG00000016478	-	99	82.547	ENSCHIG00000008230	-	100	82.547	Capra_hircus
ENSOCUG00000016478	-	99	84.632	ENSTSYG00000013234	-	100	84.632	Carlito_syrichta
ENSOCUG00000016478	-	100	81.778	ENSCPOG00000011643	-	100	81.778	Cavia_porcellus
ENSOCUG00000016478	-	99	84.666	ENSCCAG00000011754	-	99	88.828	Cebus_capucinus
ENSOCUG00000016478	-	99	85.495	ENSCATG00000030661	-	99	89.931	Cercocebus_atys
ENSOCUG00000016478	-	99	82.930	ENSCLAG00000010476	-	99	82.930	Chinchilla_lanigera
ENSOCUG00000016478	-	99	85.275	ENSCSAG00000012712	-	99	85.275	Chlorocebus_sabaeus
ENSOCUG00000016478	-	99	68.587	ENSCPBG00000003204	-	99	69.095	Chrysemys_picta_bellii
ENSOCUG00000016478	-	99	85.495	ENSCANG00000017939	-	99	90.069	Colobus_angolensis_palliatus
ENSOCUG00000016478	-	99	77.607	ENSCGRG00001020184	Rad54b	100	77.607	Cricetulus_griseus_chok1gshd
ENSOCUG00000016478	-	99	76.509	ENSCGRG00000016752	Rad54b	100	76.509	Cricetulus_griseus_crigri
ENSOCUG00000016478	-	89	57.824	ENSCSEG00000001601	rad54b	96	57.805	Cynoglossus_semilaevis
ENSOCUG00000016478	-	99	56.366	ENSCVAG00000009200	rad54b	99	56.366	Cyprinodon_variegatus
ENSOCUG00000016478	-	99	54.069	ENSDARG00000092134	rad54b	100	60.429	Danio_rerio
ENSOCUG00000016478	-	99	82.037	ENSDNOG00000015535	-	99	82.037	Dasypus_novemcinctus
ENSOCUG00000016478	-	99	82.308	ENSDORG00000002492	Rad54b	100	82.308	Dipodomys_ordii
ENSOCUG00000016478	-	86	80.457	ENSETEG00000010605	-	100	80.457	Echinops_telfairi
ENSOCUG00000016478	-	100	46.391	ENSEBUG00000009104	rad54b	99	46.610	Eptatretus_burgeri
ENSOCUG00000016478	-	97	82.333	ENSEASG00005004021	-	100	82.333	Equus_asinus_asinus
ENSOCUG00000016478	-	99	82.747	ENSECAG00000021949	-	99	82.747	Equus_caballus
ENSOCUG00000016478	-	83	81.988	ENSEEUG00000008056	-	83	81.988	Erinaceus_europaeus
ENSOCUG00000016478	-	99	52.296	ENSELUG00000009287	rad54b	99	52.710	Esox_lucius
ENSOCUG00000016478	-	99	83.443	ENSFCAG00000015513	-	100	88.154	Felis_catus
ENSOCUG00000016478	-	99	66.377	ENSFALG00000005467	-	99	66.377	Ficedula_albicollis
ENSOCUG00000016478	-	99	82.618	ENSFDAG00000020541	-	100	82.618	Fukomys_damarensis
ENSOCUG00000016478	-	89	57.473	ENSFHEG00000014382	rad54b	90	57.473	Fundulus_heteroclitus
ENSOCUG00000016478	-	86	57.538	ENSGMOG00000014774	rad54b	98	57.538	Gadus_morhua
ENSOCUG00000016478	-	99	66.776	ENSGALG00000043597	RAD54B	99	66.776	Gallus_gallus
ENSOCUG00000016478	-	99	54.853	ENSGAFG00000007901	rad54b	99	54.733	Gambusia_affinis
ENSOCUG00000016478	-	99	54.301	ENSGACG00000009128	rad54b	99	54.301	Gasterosteus_aculeatus
ENSOCUG00000016478	-	99	68.301	ENSGAGG00000018747	-	99	68.301	Gopherus_agassizii
ENSOCUG00000016478	-	99	85.855	ENSGGOG00000023516	-	100	85.855	Gorilla_gorilla
ENSOCUG00000016478	-	99	53.945	ENSHBUG00000016017	rad54b	99	53.945	Haplochromis_burtoni
ENSOCUG00000016478	-	99	81.461	ENSHGLG00000008263	RAD54B	99	81.461	Heterocephalus_glaber_female
ENSOCUG00000016478	-	99	80.607	ENSHGLG00100008108	-	99	80.607	Heterocephalus_glaber_male
ENSOCUG00000016478	-	99	52.541	ENSHCOG00000004764	rad54b	98	55.734	Hippocampus_comes
ENSOCUG00000016478	-	99	53.347	ENSIPUG00000018531	rad54b	99	53.347	Ictalurus_punctatus
ENSOCUG00000016478	-	99	82.633	ENSSTOG00000010791	-	99	82.633	Ictidomys_tridecemlineatus
ENSOCUG00000016478	-	99	80.220	ENSJJAG00000010314	Rad54b	100	80.220	Jaculus_jaculus
ENSOCUG00000016478	-	99	53.224	ENSKMAG00000004744	rad54b	99	53.224	Kryptolebias_marmoratus
ENSOCUG00000016478	-	82	68.933	ENSLACG00000000859	-	100	68.933	Latimeria_chalumnae
ENSOCUG00000016478	-	99	59.807	ENSLOCG00000010100	rad54b	98	62.710	Lepisosteus_oculatus
ENSOCUG00000016478	-	89	84.530	ENSLAFG00000015315	-	100	84.530	Loxodonta_africana
ENSOCUG00000016478	-	99	85.604	ENSMFAG00000031629	-	99	90.069	Macaca_fascicularis
ENSOCUG00000016478	-	99	85.604	ENSMMUG00000005659	-	99	85.604	Macaca_mulatta
ENSOCUG00000016478	-	99	85.479	ENSMNEG00000016408	-	99	85.479	Macaca_nemestrina
ENSOCUG00000016478	-	99	85.495	ENSMLEG00000006946	-	99	85.495	Mandrillus_leucophaeus
ENSOCUG00000016478	-	99	54.811	ENSMAMG00000012269	rad54b	99	54.821	Mastacembelus_armatus
ENSOCUG00000016478	-	99	53.945	ENSMZEG00005005281	rad54b	95	59.023	Maylandia_zebra
ENSOCUG00000016478	-	99	66.594	ENSMGAG00000012024	-	99	66.594	Meleagris_gallopavo
ENSOCUG00000016478	-	99	76.839	ENSMAUG00000013586	Rad54b	100	76.839	Mesocricetus_auratus
ENSOCUG00000016478	-	99	80.968	ENSMICG00000000754	-	99	80.968	Microcebus_murinus
ENSOCUG00000016478	-	100	76.451	ENSMOCG00000020035	Rad54b	100	76.451	Microtus_ochrogaster
ENSOCUG00000016478	-	87	58.272	ENSMMOG00000003394	rad54b	91	58.272	Mola_mola
ENSOCUG00000016478	-	88	76.625	ENSMODG00000007343	-	99	76.625	Monodelphis_domestica
ENSOCUG00000016478	-	71	59.535	ENSMALG00000001520	rad54b	99	59.535	Monopterus_albus
ENSOCUG00000016478	-	99	77.717	MGP_CAROLIEiJ_G0025810	Rad54b	100	77.717	Mus_caroli
ENSOCUG00000016478	-	99	76.923	ENSMUSG00000078773	Rad54b	100	76.923	Mus_musculus
ENSOCUG00000016478	-	99	77.473	MGP_PahariEiJ_G0023933	Rad54b	100	77.473	Mus_pahari
ENSOCUG00000016478	-	99	77.717	MGP_SPRETEiJ_G0026758	Rad54b	100	77.717	Mus_spretus
ENSOCUG00000016478	-	89	85.185	ENSMPUG00000008878	-	100	85.185	Mustela_putorius_furo
ENSOCUG00000016478	-	99	81.469	ENSMLUG00000008953	-	99	81.469	Myotis_lucifugus
ENSOCUG00000016478	-	99	80.459	ENSNGAG00000017537	Rad54b	100	80.459	Nannospalax_galili
ENSOCUG00000016478	-	99	54.198	ENSNBRG00000013394	rad54b	99	54.198	Neolamprologus_brichardi
ENSOCUG00000016478	-	100	85.197	ENSNLEG00000003062	-	100	89.546	Nomascus_leucogenys
ENSOCUG00000016478	-	71	73.770	ENSMEUG00000012426	-	71	73.770	Notamacropus_eugenii
ENSOCUG00000016478	-	99	81.099	ENSODEG00000019564	-	100	81.099	Octodon_degus
ENSOCUG00000016478	-	88	77.640	ENSODEG00000002650	-	95	84.462	Octodon_degus
ENSOCUG00000016478	-	99	54.951	ENSONIG00000006067	rad54b	99	54.951	Oreochromis_niloticus
ENSOCUG00000016478	-	83	75.166	ENSOANG00000011348	-	100	75.166	Ornithorhynchus_anatinus
ENSOCUG00000016478	-	99	54.904	ENSORLG00000008918	rad54b	99	62.016	Oryzias_latipes
ENSOCUG00000016478	-	70	62.016	ENSORLG00020012171	rad54b	99	62.016	Oryzias_latipes_hni
ENSOCUG00000016478	-	99	53.651	ENSORLG00015018536	rad54b	99	53.651	Oryzias_latipes_hsok
ENSOCUG00000016478	-	84	60.103	ENSOMEG00000004345	rad54b	99	60.103	Oryzias_melastigma
ENSOCUG00000016478	-	99	83.516	ENSOGAG00000007854	-	99	83.516	Otolemur_garnettii
ENSOCUG00000016478	-	89	85.222	ENSOARG00000007691	-	100	85.222	Ovis_aries
ENSOCUG00000016478	-	99	84.286	ENSPPAG00000029572	-	99	84.286	Pan_paniscus
ENSOCUG00000016478	-	99	83.443	ENSPPRG00000007571	-	100	88.017	Panthera_pardus
ENSOCUG00000016478	-	80	88.017	ENSPTIG00000012670	-	100	88.017	Panthera_tigris_altaica
ENSOCUG00000016478	-	99	85.604	ENSPTRG00000020427	-	99	90.207	Pan_troglodytes
ENSOCUG00000016478	-	99	85.604	ENSPANG00000019566	-	99	85.604	Papio_anubis
ENSOCUG00000016478	-	99	57.804	ENSPKIG00000014974	rad54b	99	57.804	Paramormyrops_kingsleyae
ENSOCUG00000016478	-	99	66.956	ENSPSIG00000002383	-	98	71.623	Pelodiscus_sinensis
ENSOCUG00000016478	-	99	77.827	ENSPEMG00000012133	Rad54b	100	77.827	Peromyscus_maniculatus_bairdii
ENSOCUG00000016478	-	86	59.199	ENSPMAG00000002916	rad54b	99	59.199	Petromyzon_marinus
ENSOCUG00000016478	-	88	78.223	ENSPCIG00000020151	-	94	77.722	Phascolarctos_cinereus
ENSOCUG00000016478	-	99	54.767	ENSPFOG00000023411	rad54b	99	54.767	Poecilia_formosa
ENSOCUG00000016478	-	99	54.979	ENSPLAG00000010430	rad54b	99	54.979	Poecilia_latipinna
ENSOCUG00000016478	-	99	54.767	ENSPMEG00000016873	rad54b	99	54.767	Poecilia_mexicana
ENSOCUG00000016478	-	99	55.277	ENSPREG00000018443	rad54b	99	55.157	Poecilia_reticulata
ENSOCUG00000016478	-	99	85.275	ENSPPYG00000018750	-	99	85.275	Pongo_abelii
ENSOCUG00000016478	-	99	85.604	ENSPCOG00000026845	-	99	89.379	Propithecus_coquereli
ENSOCUG00000016478	-	87	87.449	ENSPVAG00000000261	-	86	87.449	Pteropus_vampyrus
ENSOCUG00000016478	-	87	58.801	ENSPNYG00000018303	rad54b	97	58.801	Pundamilia_nyererei
ENSOCUG00000016478	-	99	54.772	ENSPNAG00000000295	rad54b	99	54.772	Pygocentrus_nattereri
ENSOCUG00000016478	-	99	75.851	ENSRNOG00000039949	Rad54b	100	75.851	Rattus_norvegicus
ENSOCUG00000016478	-	99	85.055	ENSRBIG00000020419	-	99	85.055	Rhinopithecus_bieti
ENSOCUG00000016478	-	99	85.055	ENSRROG00000039897	-	99	85.055	Rhinopithecus_roxellana
ENSOCUG00000016478	-	78	37.611	YBR073W	RDH54	79	38.295	Saccharomyces_cerevisiae
ENSOCUG00000016478	-	99	84.396	ENSSBOG00000028501	-	99	84.396	Saimiri_boliviensis_boliviensis
ENSOCUG00000016478	-	99	72.777	ENSSHAG00000017038	-	99	72.777	Sarcophilus_harrisii
ENSOCUG00000016478	-	63	65.217	ENSSFOG00015008483	rad54b	89	65.217	Scleropages_formosus
ENSOCUG00000016478	-	99	53.712	ENSSMAG00000018659	rad54b	99	54.426	Scophthalmus_maximus
ENSOCUG00000016478	-	99	54.362	ENSSDUG00000001122	rad54b	98	54.681	Seriola_dumerili
ENSOCUG00000016478	-	99	54.000	ENSSLDG00000013787	rad54b	99	54.316	Seriola_lalandi_dorsalis
ENSOCUG00000016478	-	99	67.360	ENSSPUG00000016497	-	99	67.360	Sphenodon_punctatus
ENSOCUG00000016478	-	99	55.000	ENSSPAG00000012800	rad54b	99	55.000	Stegastes_partitus
ENSOCUG00000016478	-	99	82.068	ENSSSCG00000006101	-	99	86.918	Sus_scrofa
ENSOCUG00000016478	-	99	65.659	ENSTGUG00000011880	-	99	65.659	Taeniopygia_guttata
ENSOCUG00000016478	-	86	59.673	ENSTRUG00000010015	rad54b	99	53.725	Takifugu_rubripes
ENSOCUG00000016478	-	99	80.241	ENSTTRG00000006312	-	100	80.241	Tursiops_truncatus
ENSOCUG00000016478	-	99	83.662	ENSUMAG00000016401	-	100	83.662	Ursus_maritimus
ENSOCUG00000016478	-	99	82.366	ENSVPAG00000003157	-	100	82.366	Vicugna_pacos
ENSOCUG00000016478	-	99	54.015	ENSXETG00000025924	rad54b	99	58.801	Xenopus_tropicalis
ENSOCUG00000016478	-	99	53.913	ENSXMAG00000013141	rad54b	99	53.913	Xiphophorus_maculatus