EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000017039 (Gene tree)
Gene ID: 100339442
Gene Symbol: RPUSD4
Alias: -
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 10290 bases
Position: chr1:90871441-90881730
Accession: 100339442
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000014640	PseudoU_synth_2	PF00849.22	3.9e-28	1	1
ENSOCUP00000018836	PseudoU_synth_2	PF00849.22	3.9e-28	1	1
ENSOCUP00000018216	PseudoU_synth_2	PF00849.22	3.9e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000024420	RPUSD4-201	1131	-	ENSOCUP00000018216	377 (aa)	-	G1TMK5
ENSOCUT00000017038	RPUSD4-203	1128	-	ENSOCUP00000014640	376 (aa)	-	G1TCW0
ENSOCUT00000030911	RPUSD4-202	1134	XM_002708305	ENSOCUP00000018836	377 (aa)	XP_002708351	G1TPA4

Gene Model

Click here to download ENSOCUG00000017039's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000017039's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000017039	RPUSD4	98	82.210	ENSG00000165526	RPUSD4	98	82.210	Homo_sapiens
ENSOCUG00000017039	RPUSD4	90	51.453	ENSAPOG00000011024	rpusd4	85	51.453	Acanthochromis_polyacanthus
ENSOCUG00000017039	RPUSD4	99	81.016	ENSAMEG00000000127	-	99	81.016	Ailuropoda_melanoleuca
ENSOCUG00000017039	RPUSD4	82	77.241	ENSAMEG00000005953	-	98	77.241	Ailuropoda_melanoleuca
ENSOCUG00000017039	RPUSD4	85	52.160	ENSACIG00000003533	rpusd4	95	51.988	Amphilophus_citrinellus
ENSOCUG00000017039	RPUSD4	89	52.212	ENSAOCG00000015409	rpusd4	83	52.212	Amphiprion_ocellaris
ENSOCUG00000017039	RPUSD4	89	52.507	ENSAPEG00000018935	rpusd4	83	52.507	Amphiprion_percula
ENSOCUG00000017039	RPUSD4	87	52.553	ENSATEG00000008059	rpusd4	82	52.553	Anabas_testudineus
ENSOCUG00000017039	RPUSD4	74	60.714	ENSAPLG00000013250	RPUSD4	99	59.797	Anas_platyrhynchos
ENSOCUG00000017039	RPUSD4	88	64.286	ENSACAG00000000189	RPUSD4	92	64.286	Anolis_carolinensis
ENSOCUG00000017039	RPUSD4	97	82.143	ENSANAG00000024050	RPUSD4	98	82.143	Aotus_nancymaae
ENSOCUG00000017039	RPUSD4	86	52.888	ENSACLG00000020996	rpusd4	84	52.888	Astatotilapia_calliptera
ENSOCUG00000017039	RPUSD4	92	49.575	ENSAMXG00000031479	rpusd4	99	49.575	Astyanax_mexicanus
ENSOCUG00000017039	RPUSD4	100	76.984	ENSBTAG00000020900	RPUSD4	100	76.984	Bos_taurus
ENSOCUG00000017039	RPUSD4	96	82.873	ENSCJAG00000042850	RPUSD4	91	82.873	Callithrix_jacchus
ENSOCUG00000017039	RPUSD4	99	81.067	ENSCAFG00000010488	RPUSD4	99	81.067	Canis_familiaris
ENSOCUG00000017039	RPUSD4	99	81.067	ENSCAFG00020010621	RPUSD4	99	81.067	Canis_lupus_dingo
ENSOCUG00000017039	RPUSD4	99	78.307	ENSCHIG00000009975	RPUSD4	99	78.307	Capra_hircus
ENSOCUG00000017039	RPUSD4	99	83.733	ENSTSYG00000008456	RPUSD4	99	83.733	Carlito_syrichta
ENSOCUG00000017039	RPUSD4	68	80.392	ENSCAPG00000006040	RPUSD4	98	80.392	Cavia_aperea
ENSOCUG00000017039	RPUSD4	99	81.769	ENSCPOG00000014971	RPUSD4	99	81.769	Cavia_porcellus
ENSOCUG00000017039	RPUSD4	98	81.892	ENSCCAG00000027838	RPUSD4	99	81.892	Cebus_capucinus
ENSOCUG00000017039	RPUSD4	97	82.289	ENSCATG00000041570	RPUSD4	97	82.289	Cercocebus_atys
ENSOCUG00000017039	RPUSD4	99	84.225	ENSCLAG00000016553	RPUSD4	99	84.225	Chinchilla_lanigera
ENSOCUG00000017039	RPUSD4	97	81.694	ENSCSAG00000002274	RPUSD4	97	81.694	Chlorocebus_sabaeus
ENSOCUG00000017039	RPUSD4	74	84.643	ENSCHOG00000010249	RPUSD4	99	84.643	Choloepus_hoffmanni
ENSOCUG00000017039	RPUSD4	76	68.182	ENSCPBG00000011175	RPUSD4	98	68.182	Chrysemys_picta_bellii
ENSOCUG00000017039	RPUSD4	72	42.652	ENSCSAVG00000000872	-	54	42.652	Ciona_savignyi
ENSOCUG00000017039	RPUSD4	98	81.622	ENSCANG00000039684	RPUSD4	98	81.622	Colobus_angolensis_palliatus
ENSOCUG00000017039	RPUSD4	98	82.527	ENSCGRG00001024141	Rpusd4	98	82.527	Cricetulus_griseus_chok1gshd
ENSOCUG00000017039	RPUSD4	98	82.527	ENSCGRG00000014415	Rpusd4	98	82.527	Cricetulus_griseus_crigri
ENSOCUG00000017039	RPUSD4	89	51.765	ENSCVAG00000000392	rpusd4	95	51.765	Cyprinodon_variegatus
ENSOCUG00000017039	RPUSD4	89	51.471	ENSCVAG00000008761	rpusd4	86	51.471	Cyprinodon_variegatus
ENSOCUG00000017039	RPUSD4	92	47.714	ENSDARG00000012674	rpusd4	97	48.000	Danio_rerio
ENSOCUG00000017039	RPUSD4	97	79.781	ENSDNOG00000020026	RPUSD4	97	79.781	Dasypus_novemcinctus
ENSOCUG00000017039	RPUSD4	100	79.101	ENSDORG00000016717	Rpusd4	100	79.101	Dipodomys_ordii
ENSOCUG00000017039	RPUSD4	98	80.488	ENSETEG00000013953	RPUSD4	98	80.488	Echinops_telfairi
ENSOCUG00000017039	RPUSD4	99	82.620	ENSEASG00005022982	RPUSD4	99	82.620	Equus_asinus_asinus
ENSOCUG00000017039	RPUSD4	99	82.353	ENSECAG00000000557	RPUSD4	99	82.353	Equus_caballus
ENSOCUG00000017039	RPUSD4	79	87.293	ENSEEUG00000014036	RPUSD4	79	87.293	Erinaceus_europaeus
ENSOCUG00000017039	RPUSD4	88	55.233	ENSELUG00000008075	rpusd4	89	55.132	Esox_lucius
ENSOCUG00000017039	RPUSD4	99	80.749	ENSFCAG00000029789	RPUSD4	99	80.749	Felis_catus
ENSOCUG00000017039	RPUSD4	88	58.929	ENSFALG00000005171	RPUSD4	98	58.929	Ficedula_albicollis
ENSOCUG00000017039	RPUSD4	99	82.493	ENSFDAG00000014307	RPUSD4	99	82.493	Fukomys_damarensis
ENSOCUG00000017039	RPUSD4	91	51.111	ENSFHEG00000004329	rpusd4	92	51.111	Fundulus_heteroclitus
ENSOCUG00000017039	RPUSD4	86	51.070	ENSGMOG00000017726	rpusd4	96	51.070	Gadus_morhua
ENSOCUG00000017039	RPUSD4	75	62.191	ENSGALG00000024326	RPUSD4	95	57.434	Gallus_gallus
ENSOCUG00000017039	RPUSD4	98	46.015	ENSGAFG00000021559	rpusd4	98	46.134	Gambusia_affinis
ENSOCUG00000017039	RPUSD4	89	50.588	ENSGACG00000001657	rpusd4	100	50.588	Gasterosteus_aculeatus
ENSOCUG00000017039	RPUSD4	96	62.637	ENSGAGG00000000132	RPUSD4	99	62.637	Gopherus_agassizii
ENSOCUG00000017039	RPUSD4	99	80.902	ENSGGOG00000016494	RPUSD4	99	80.902	Gorilla_gorilla
ENSOCUG00000017039	RPUSD4	86	52.888	ENSHBUG00000022838	rpusd4	84	52.888	Haplochromis_burtoni
ENSOCUG00000017039	RPUSD4	99	82.181	ENSHGLG00000002285	RPUSD4	99	82.181	Heterocephalus_glaber_female
ENSOCUG00000017039	RPUSD4	99	82.181	ENSHGLG00100006385	RPUSD4	99	82.181	Heterocephalus_glaber_male
ENSOCUG00000017039	RPUSD4	89	50.286	ENSHCOG00000006612	rpusd4	89	50.286	Hippocampus_comes
ENSOCUG00000017039	RPUSD4	91	51.437	ENSIPUG00000023879	rusd4	90	51.437	Ictalurus_punctatus
ENSOCUG00000017039	RPUSD4	97	84.341	ENSSTOG00000025280	RPUSD4	100	84.341	Ictidomys_tridecemlineatus
ENSOCUG00000017039	RPUSD4	98	83.152	ENSJJAG00000018673	Rpusd4	99	83.424	Jaculus_jaculus
ENSOCUG00000017039	RPUSD4	89	52.493	ENSKMAG00000021805	rpusd4	88	52.493	Kryptolebias_marmoratus
ENSOCUG00000017039	RPUSD4	86	51.662	ENSLBEG00000020394	rpusd4	91	51.662	Labrus_bergylta
ENSOCUG00000017039	RPUSD4	86	62.654	ENSLACG00000011028	RPUSD4	85	61.424	Latimeria_chalumnae
ENSOCUG00000017039	RPUSD4	85	49.847	ENSLOCG00000003124	rpusd4	86	49.390	Lepisosteus_oculatus
ENSOCUG00000017039	RPUSD4	99	81.501	ENSLAFG00000005211	RPUSD4	99	81.720	Loxodonta_africana
ENSOCUG00000017039	RPUSD4	99	82.086	ENSMFAG00000039513	RPUSD4	99	82.086	Macaca_fascicularis
ENSOCUG00000017039	RPUSD4	99	81.818	ENSMMUG00000007933	RPUSD4	99	81.818	Macaca_mulatta
ENSOCUG00000017039	RPUSD4	99	81.818	ENSMNEG00000027414	RPUSD4	97	82.834	Macaca_nemestrina
ENSOCUG00000017039	RPUSD4	97	82.240	ENSMLEG00000042461	RPUSD4	97	82.240	Mandrillus_leucophaeus
ENSOCUG00000017039	RPUSD4	87	51.335	ENSMAMG00000023839	rpusd4	86	51.335	Mastacembelus_armatus
ENSOCUG00000017039	RPUSD4	86	52.888	ENSMZEG00005011999	rpusd4	84	52.888	Maylandia_zebra
ENSOCUG00000017039	RPUSD4	74	60.498	ENSMGAG00000000840	RPUSD4	99	58.154	Meleagris_gallopavo
ENSOCUG00000017039	RPUSD4	100	80.159	ENSMAUG00000010280	Rpusd4	100	80.159	Mesocricetus_auratus
ENSOCUG00000017039	RPUSD4	99	85.561	ENSMICG00000015979	RPUSD4	97	87.926	Microcebus_murinus
ENSOCUG00000017039	RPUSD4	98	77.748	ENSMOCG00000000661	Rpusd4	98	77.748	Microtus_ochrogaster
ENSOCUG00000017039	RPUSD4	82	53.503	ENSMMOG00000021731	rpusd4	93	53.503	Mola_mola
ENSOCUG00000017039	RPUSD4	86	75.617	ENSMODG00000004521	RPUSD4	83	75.617	Monodelphis_domestica
ENSOCUG00000017039	RPUSD4	81	52.922	ENSMALG00000005839	rpusd4	98	51.692	Monopterus_albus
ENSOCUG00000017039	RPUSD4	100	79.630	MGP_CAROLIEiJ_G0031954	Rpusd4	100	79.630	Mus_caroli
ENSOCUG00000017039	RPUSD4	93	84.286	ENSMUSG00000032044	Rpusd4	93	84.286	Mus_musculus
ENSOCUG00000017039	RPUSD4	100	80.159	MGP_PahariEiJ_G0014819	Rpusd4	100	80.159	Mus_pahari
ENSOCUG00000017039	RPUSD4	94	83.708	MGP_SPRETEiJ_G0033078	Rpusd4	94	83.708	Mus_spretus
ENSOCUG00000017039	RPUSD4	98	79.730	ENSMPUG00000006608	RPUSD4	99	79.570	Mustela_putorius_furo
ENSOCUG00000017039	RPUSD4	92	83.191	ENSMLUG00000017328	-	99	80.053	Myotis_lucifugus
ENSOCUG00000017039	RPUSD4	68	84.706	ENSMLUG00000029348	-	100	84.706	Myotis_lucifugus
ENSOCUG00000017039	RPUSD4	98	80.645	ENSNGAG00000020847	Rpusd4	98	80.645	Nannospalax_galili
ENSOCUG00000017039	RPUSD4	86	53.191	ENSNBRG00000005207	rpusd4	95	53.191	Neolamprologus_brichardi
ENSOCUG00000017039	RPUSD4	99	81.867	ENSNLEG00000007465	RPUSD4	99	81.867	Nomascus_leucogenys
ENSOCUG00000017039	RPUSD4	92	73.410	ENSMEUG00000004370	RPUSD4	93	73.913	Notamacropus_eugenii
ENSOCUG00000017039	RPUSD4	70	64.015	ENSOPRG00000013141	-	100	64.015	Ochotona_princeps
ENSOCUG00000017039	RPUSD4	99	82.620	ENSODEG00000004577	RPUSD4	99	82.620	Octodon_degus
ENSOCUG00000017039	RPUSD4	89	52.187	ENSONIG00000018879	rpusd4	92	52.187	Oreochromis_niloticus
ENSOCUG00000017039	RPUSD4	78	70.169	ENSOANG00000007247	RPUSD4	95	70.034	Ornithorhynchus_anatinus
ENSOCUG00000017039	RPUSD4	80	53.289	ENSORLG00000002750	rpusd4	83	53.311	Oryzias_latipes
ENSOCUG00000017039	RPUSD4	80	52.961	ENSORLG00020002044	rpusd4	75	52.980	Oryzias_latipes_hni
ENSOCUG00000017039	RPUSD4	88	50.599	ENSORLG00015020034	rpusd4	83	50.599	Oryzias_latipes_hsok
ENSOCUG00000017039	RPUSD4	81	53.548	ENSOMEG00000004861	rpusd4	83	50.588	Oryzias_melastigma
ENSOCUG00000017039	RPUSD4	100	81.003	ENSOGAG00000008922	RPUSD4	100	81.003	Otolemur_garnettii
ENSOCUG00000017039	RPUSD4	97	79.133	ENSOARG00000012238	RPUSD4	97	79.133	Ovis_aries
ENSOCUG00000017039	RPUSD4	98	82.480	ENSPPAG00000042883	RPUSD4	93	81.432	Pan_paniscus
ENSOCUG00000017039	RPUSD4	98	81.402	ENSPPRG00000003081	RPUSD4	98	81.402	Panthera_pardus
ENSOCUG00000017039	RPUSD4	98	81.402	ENSPTIG00000012059	RPUSD4	98	81.402	Panthera_tigris_altaica
ENSOCUG00000017039	RPUSD4	98	82.480	ENSPTRG00000004454	RPUSD4	98	82.480	Pan_troglodytes
ENSOCUG00000017039	RPUSD4	99	81.551	ENSPANG00000015040	RPUSD4	99	81.551	Papio_anubis
ENSOCUG00000017039	RPUSD4	89	57.692	ENSPKIG00000023986	rpusd4	86	57.692	Paramormyrops_kingsleyae
ENSOCUG00000017039	RPUSD4	80	66.445	ENSPSIG00000014268	RPUSD4	95	66.445	Pelodiscus_sinensis
ENSOCUG00000017039	RPUSD4	87	50.298	ENSPMGG00000002806	rpusd4	93	50.149	Periophthalmus_magnuspinnatus
ENSOCUG00000017039	RPUSD4	98	73.118	ENSPEMG00000000278	Rpusd4	98	73.118	Peromyscus_maniculatus_bairdii
ENSOCUG00000017039	RPUSD4	82	43.824	ENSPMAG00000008183	rpusd4	98	42.647	Petromyzon_marinus
ENSOCUG00000017039	RPUSD4	90	75.588	ENSPCIG00000010212	RPUSD4	93	75.588	Phascolarctos_cinereus
ENSOCUG00000017039	RPUSD4	93	48.787	ENSPFOG00000019030	rpusd4	97	48.787	Poecilia_formosa
ENSOCUG00000017039	RPUSD4	98	48.205	ENSPLAG00000016848	rpusd4	98	48.329	Poecilia_latipinna
ENSOCUG00000017039	RPUSD4	98	47.179	ENSPMEG00000017534	rpusd4	98	47.301	Poecilia_mexicana
ENSOCUG00000017039	RPUSD4	92	48.501	ENSPREG00000005689	rpusd4	94	48.501	Poecilia_reticulata
ENSOCUG00000017039	RPUSD4	99	81.432	ENSPPYG00000004043	RPUSD4	99	81.432	Pongo_abelii
ENSOCUG00000017039	RPUSD4	79	83.978	ENSPCAG00000000753	RPUSD4	80	83.978	Procavia_capensis
ENSOCUG00000017039	RPUSD4	98	78.649	ENSPCOG00000020694	RPUSD4	100	78.495	Propithecus_coquereli
ENSOCUG00000017039	RPUSD4	93	86.364	ENSPVAG00000000988	RPUSD4	94	86.364	Pteropus_vampyrus
ENSOCUG00000017039	RPUSD4	86	51.976	ENSPNYG00000009652	rpusd4	84	51.976	Pundamilia_nyererei
ENSOCUG00000017039	RPUSD4	88	52.096	ENSPNAG00000012264	rpusd4	88	52.096	Pygocentrus_nattereri
ENSOCUG00000017039	RPUSD4	100	80.159	ENSRNOG00000011567	Rpusd4	100	80.159	Rattus_norvegicus
ENSOCUG00000017039	RPUSD4	98	82.703	ENSRBIG00000034842	RPUSD4	98	82.703	Rhinopithecus_bieti
ENSOCUG00000017039	RPUSD4	98	82.703	ENSRROG00000039753	RPUSD4	98	82.703	Rhinopithecus_roxellana
ENSOCUG00000017039	RPUSD4	97	81.593	ENSSBOG00000030413	RPUSD4	98	81.593	Saimiri_boliviensis_boliviensis
ENSOCUG00000017039	RPUSD4	81	77.228	ENSSHAG00000008304	RPUSD4	100	77.228	Sarcophilus_harrisii
ENSOCUG00000017039	RPUSD4	96	53.243	ENSSFOG00015006203	rpusd4	99	53.784	Scleropages_formosus
ENSOCUG00000017039	RPUSD4	96	49.315	ENSSMAG00000020978	rpusd4	94	49.315	Scophthalmus_maximus
ENSOCUG00000017039	RPUSD4	88	49.852	ENSSDUG00000013399	rpusd4	88	49.852	Seriola_dumerili
ENSOCUG00000017039	RPUSD4	88	49.852	ENSSLDG00000023507	rpusd4	88	49.852	Seriola_lalandi_dorsalis
ENSOCUG00000017039	RPUSD4	88	63.501	ENSSPUG00000001401	RPUSD4	92	64.095	Sphenodon_punctatus
ENSOCUG00000017039	RPUSD4	90	52.312	ENSSPAG00000012163	rpusd4	88	52.312	Stegastes_partitus
ENSOCUG00000017039	RPUSD4	99	82.574	ENSSSCG00000015233	RPUSD4	99	82.574	Sus_scrofa
ENSOCUG00000017039	RPUSD4	80	61.130	ENSTGUG00000000773	RPUSD4	100	61.130	Taeniopygia_guttata
ENSOCUG00000017039	RPUSD4	86	50.909	ENSTRUG00000012283	rpusd4	84	50.909	Takifugu_rubripes
ENSOCUG00000017039	RPUSD4	90	49.422	ENSTNIG00000014676	rpusd4	88	49.422	Tetraodon_nigroviridis
ENSOCUG00000017039	RPUSD4	100	80.371	ENSTTRG00000001555	RPUSD4	100	80.371	Tursiops_truncatus
ENSOCUG00000017039	RPUSD4	99	80.637	ENSUMAG00000002219	RPUSD4	99	80.637	Ursus_maritimus
ENSOCUG00000017039	RPUSD4	70	85.985	ENSVPAG00000001066	RPUSD4	100	85.985	Vicugna_pacos
ENSOCUG00000017039	RPUSD4	99	80.851	ENSVVUG00000020101	RPUSD4	99	80.851	Vulpes_vulpes
ENSOCUG00000017039	RPUSD4	98	47.558	ENSXCOG00000004676	rpusd4	98	47.680	Xiphophorus_couchianus
ENSOCUG00000017039	RPUSD4	98	48.205	ENSXMAG00000023351	rpusd4	98	48.329	Xiphophorus_maculatus