EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000017097 (Gene tree)
Gene ID: 100341643
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 15039 bases
Position: chrGL018720:20748-35786
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000014693	TUDOR	PF00567.24	4.3e-05	1	1
ENSOCUP00000014693	SMN	PF06003.12	4.3e-107	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000017096	-	855	-	ENSOCUP00000014693	284 (aa)	-	G1TD01

Gene Model

Click here to download ENSOCUG00000017097's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000017097's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000017097	-	99	86.054	ENSOCUG00000025183	-	100	85.763
ENSOCUG00000017097	-	99	97.203	ENSOCUG00000026649	-	99	97.203

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000017097	-	99	82.877	ENSG00000172062	SMN1	99	82.877	Homo_sapiens
ENSOCUG00000017097	-	99	82.877	ENSG00000205571	SMN2	87	95.000	Homo_sapiens
ENSOCUG00000017097	-	92	50.719	ENSAPOG00000011324	smn1	94	53.506	Acanthochromis_polyacanthus
ENSOCUG00000017097	-	96	86.833	ENSAMEG00000003316	-	97	86.644	Ailuropoda_melanoleuca
ENSOCUG00000017097	-	88	46.442	ENSACIG00000019772	-	97	49.615	Amphilophus_citrinellus
ENSOCUG00000017097	-	92	50.719	ENSAOCG00000024444	smn1	94	53.506	Amphiprion_ocellaris
ENSOCUG00000017097	-	92	51.079	ENSAPEG00000016504	smn1	94	53.875	Amphiprion_percula
ENSOCUG00000017097	-	88	50.929	ENSATEG00000002182	smn1	79	49.638	Anabas_testudineus
ENSOCUG00000017097	-	67	56.923	ENSAPLG00000010912	-	97	56.410	Anas_platyrhynchos
ENSOCUG00000017097	-	99	54.514	ENSACAG00000010017	-	99	59.028	Anolis_carolinensis
ENSOCUG00000017097	-	99	81.633	ENSANAG00000032133	-	99	81.633	Aotus_nancymaae
ENSOCUG00000017097	-	92	49.462	ENSACLG00000007308	smn1	90	52.364	Astatotilapia_calliptera
ENSOCUG00000017097	-	50	57.042	ENSAMXG00000013884	smn1	97	48.611	Astyanax_mexicanus
ENSOCUG00000017097	-	95	83.571	ENSBTAG00000005743	SMN2	100	81.661	Bos_taurus
ENSOCUG00000017097	-	99	81.911	ENSCJAG00000016290	-	99	81.911	Callithrix_jacchus
ENSOCUG00000017097	-	95	87.097	ENSCAFG00000007812	SMN	100	86.552	Canis_familiaris
ENSOCUG00000017097	-	95	87.050	ENSCAFG00020019229	-	93	86.505	Canis_lupus_dingo
ENSOCUG00000017097	-	95	83.688	ENSCHIG00000015559	-	100	80.808	Capra_hircus
ENSOCUG00000017097	-	99	85.764	ENSTSYG00000012058	-	99	87.640	Carlito_syrichta
ENSOCUG00000017097	-	73	70.423	ENSCAPG00000011021	-	95	71.028	Cavia_aperea
ENSOCUG00000017097	-	99	79.181	ENSCPOG00000036973	-	100	78.498	Cavia_porcellus
ENSOCUG00000017097	-	99	78.041	ENSCPOG00000012328	-	100	77.778	Cavia_porcellus
ENSOCUG00000017097	-	99	81.443	ENSCCAG00000018127	-	99	81.443	Cebus_capucinus
ENSOCUG00000017097	-	99	83.562	ENSCATG00000037002	-	99	83.562	Cercocebus_atys
ENSOCUG00000017097	-	99	78.983	ENSCLAG00000000284	-	100	78.983	Chinchilla_lanigera
ENSOCUG00000017097	-	99	83.904	ENSCSAG00000015688	-	99	83.904	Chlorocebus_sabaeus
ENSOCUG00000017097	-	85	75.000	ENSCHOG00000007346	-	77	96.296	Choloepus_hoffmanni
ENSOCUG00000017097	-	99	61.806	ENSCPBG00000010968	-	99	62.214	Chrysemys_picta_bellii
ENSOCUG00000017097	-	95	77.936	ENSCANG00000033324	-	96	73.868	Colobus_angolensis_palliatus
ENSOCUG00000017097	-	99	84.828	ENSCANG00000038242	-	100	84.838	Colobus_angolensis_palliatus
ENSOCUG00000017097	-	99	80.756	ENSCGRG00001017959	-	100	80.756	Cricetulus_griseus_chok1gshd
ENSOCUG00000017097	-	99	63.542	ENSCGRG00001016998	-	100	63.542	Cricetulus_griseus_chok1gshd
ENSOCUG00000017097	-	99	80.756	ENSCGRG00000007698	Smn1	100	80.756	Cricetulus_griseus_crigri
ENSOCUG00000017097	-	92	48.736	ENSCSEG00000015227	smn1	97	49.822	Cynoglossus_semilaevis
ENSOCUG00000017097	-	92	47.368	ENSCVAG00000007498	smn1	95	53.333	Cyprinodon_variegatus
ENSOCUG00000017097	-	93	48.432	ENSDARG00000018494	smn1	96	51.264	Danio_rerio
ENSOCUG00000017097	-	78	66.228	ENSDNOG00000045949	-	81	68.912	Dasypus_novemcinctus
ENSOCUG00000017097	-	82	82.083	ENSDNOG00000007283	-	100	82.083	Dasypus_novemcinctus
ENSOCUG00000017097	-	99	76.027	ENSDORG00000007082	Smn1	99	75.342	Dipodomys_ordii
ENSOCUG00000017097	-	73	72.596	ENSETEG00000001406	-	93	70.984	Echinops_telfairi
ENSOCUG00000017097	-	93	37.542	ENSEBUG00000011902	smn1	95	40.143	Eptatretus_burgeri
ENSOCUG00000017097	-	95	75.089	ENSEASG00005018000	-	97	72.887	Equus_asinus_asinus
ENSOCUG00000017097	-	95	85.053	ENSECAG00000015215	-	100	84.247	Equus_caballus
ENSOCUG00000017097	-	85	79.518	ENSEEUG00000015777	-	100	79.518	Erinaceus_europaeus
ENSOCUG00000017097	-	91	55.970	ENSELUG00000018067	smn1	94	53.731	Esox_lucius
ENSOCUG00000017097	-	99	85.223	ENSFCAG00000028292	SMN	100	85.223	Felis_catus
ENSOCUG00000017097	-	89	61.569	ENSFALG00000012320	-	91	61.569	Ficedula_albicollis
ENSOCUG00000017097	-	99	79.730	ENSFDAG00000017683	-	100	79.730	Fukomys_damarensis
ENSOCUG00000017097	-	91	49.632	ENSFHEG00000018508	smn1	96	52.222	Fundulus_heteroclitus
ENSOCUG00000017097	-	95	47.955	ENSGMOG00000017279	smn1	95	47.955	Gadus_morhua
ENSOCUG00000017097	-	92	61.742	ENSGALG00000002430	SMN	95	61.450	Gallus_gallus
ENSOCUG00000017097	-	92	52.190	ENSGAFG00000009501	smn1	94	52.030	Gambusia_affinis
ENSOCUG00000017097	-	92	49.259	ENSGACG00000010584	smn1	91	53.208	Gasterosteus_aculeatus
ENSOCUG00000017097	-	94	36.029	ENSGAGG00000013639	-	90	37.984	Gopherus_agassizii
ENSOCUG00000017097	-	97	59.786	ENSGAGG00000011374	-	99	60.071	Gopherus_agassizii
ENSOCUG00000017097	-	69	84.103	ENSGGOG00000026704	-	91	84.103	Gorilla_gorilla
ENSOCUG00000017097	-	98	74.194	ENSGGOG00000003872	-	100	75.465	Gorilla_gorilla
ENSOCUG00000017097	-	91	49.117	ENSHBUG00000013987	smn1	94	54.682	Haplochromis_burtoni
ENSOCUG00000017097	-	100	77.320	ENSHGLG00000001905	-	99	78.873	Heterocephalus_glaber_female
ENSOCUG00000017097	-	99	77.703	ENSHGLG00000001018	-	100	77.703	Heterocephalus_glaber_female
ENSOCUG00000017097	-	99	77.703	ENSHGLG00100011252	-	100	77.703	Heterocephalus_glaber_male
ENSOCUG00000017097	-	96	77.061	ENSHGLG00100018676	-	99	78.676	Heterocephalus_glaber_male
ENSOCUG00000017097	-	88	51.880	ENSHCOG00000017136	smn1	87	50.575	Hippocampus_comes
ENSOCUG00000017097	-	93	50.347	ENSIPUG00000012580	smn1	86	52.381	Ictalurus_punctatus
ENSOCUG00000017097	-	90	87.879	ENSSTOG00000012288	-	100	87.004	Ictidomys_tridecemlineatus
ENSOCUG00000017097	-	61	66.092	ENSJJAG00000014853	-	89	66.286	Jaculus_jaculus
ENSOCUG00000017097	-	92	49.275	ENSKMAG00000007239	smn1	96	51.154	Kryptolebias_marmoratus
ENSOCUG00000017097	-	92	50.000	ENSLBEG00000022550	smn1	94	53.257	Labrus_bergylta
ENSOCUG00000017097	-	92	34.629	ENSLACG00000009808	-	95	36.027	Latimeria_chalumnae
ENSOCUG00000017097	-	91	52.030	ENSLOCG00000011339	smn1	94	53.184	Lepisosteus_oculatus
ENSOCUG00000017097	-	100	83.729	ENSLAFG00000003425	-	97	83.729	Loxodonta_africana
ENSOCUG00000017097	-	99	84.247	ENSMFAG00000031523	SMN1	99	84.247	Macaca_fascicularis
ENSOCUG00000017097	-	99	80.137	ENSMFAG00000008812	-	99	80.137	Macaca_fascicularis
ENSOCUG00000017097	-	99	84.247	ENSMMUG00000020214	SMN1	99	84.247	Macaca_mulatta
ENSOCUG00000017097	-	99	79.452	ENSMMUG00000030594	-	99	79.452	Macaca_mulatta
ENSOCUG00000017097	-	99	83.904	ENSMNEG00000035094	-	99	83.904	Macaca_nemestrina
ENSOCUG00000017097	-	74	72.851	ENSMNEG00000036423	-	86	72.851	Macaca_nemestrina
ENSOCUG00000017097	-	99	85.223	ENSMLEG00000041902	-	99	84.247	Mandrillus_leucophaeus
ENSOCUG00000017097	-	91	53.571	ENSMAMG00000011034	smn1	94	53.650	Mastacembelus_armatus
ENSOCUG00000017097	-	91	49.296	ENSMZEG00005013634	smn1	94	52.878	Maylandia_zebra
ENSOCUG00000017097	-	67	59.686	ENSMGAG00000008889	-	95	59.259	Meleagris_gallopavo
ENSOCUG00000017097	-	99	79.038	ENSMAUG00000010262	Smn1	100	79.038	Mesocricetus_auratus
ENSOCUG00000017097	-	99	70.408	ENSMICG00000034708	-	100	83.516	Microcebus_murinus
ENSOCUG00000017097	-	99	78.694	ENSMOCG00000017833	Smn1	100	78.694	Microtus_ochrogaster
ENSOCUG00000017097	-	89	50.000	ENSMMOG00000005504	smn1	93	53.053	Mola_mola
ENSOCUG00000017097	-	99	70.526	ENSMODG00000001436	-	99	70.979	Monodelphis_domestica
ENSOCUG00000017097	-	91	48.070	ENSMALG00000008025	smn1	94	49.291	Monopterus_albus
ENSOCUG00000017097	-	99	79.110	MGP_CAROLIEiJ_G0018836	Smn1	100	79.110	Mus_caroli
ENSOCUG00000017097	-	99	79.110	ENSMUSG00000021645	Smn1	100	79.110	Mus_musculus
ENSOCUG00000017097	-	99	77.931	MGP_PahariEiJ_G0015911	Smn1	100	77.931	Mus_pahari
ENSOCUG00000017097	-	99	78.425	MGP_SPRETEiJ_G0019718	Smn1	100	78.425	Mus_spretus
ENSOCUG00000017097	-	94	87.681	ENSMPUG00000014470	-	98	87.681	Mustela_putorius_furo
ENSOCUG00000017097	-	100	84.053	ENSMLUG00000010603	-	97	84.053	Myotis_lucifugus
ENSOCUG00000017097	-	99	82.818	ENSNGAG00000019833	Smn1	100	82.818	Nannospalax_galili
ENSOCUG00000017097	-	91	49.477	ENSNBRG00000023000	smn1	94	55.556	Neolamprologus_brichardi
ENSOCUG00000017097	-	99	82.877	ENSNLEG00000004454	-	99	82.877	Nomascus_leucogenys
ENSOCUG00000017097	-	76	65.455	ENSMEUG00000011393	-	99	66.063	Notamacropus_eugenii
ENSOCUG00000017097	-	85	79.051	ENSOPRG00000002015	-	99	77.255	Ochotona_princeps
ENSOCUG00000017097	-	94	80.797	ENSODEG00000015976	-	96	78.417	Octodon_degus
ENSOCUG00000017097	-	92	49.135	ENSONIG00000011799	smn1	95	55.147	Oreochromis_niloticus
ENSOCUG00000017097	-	93	66.543	ENSOANG00000001626	-	96	68.030	Ornithorhynchus_anatinus
ENSOCUG00000017097	-	92	51.812	ENSORLG00000010552	smn1	94	52.030	Oryzias_latipes
ENSOCUG00000017097	-	92	52.290	ENSORLG00020007936	smn1	93	51.724	Oryzias_latipes_hni
ENSOCUG00000017097	-	55	58.974	ENSORLG00015022425	smn1	94	51.449	Oryzias_latipes_hsok
ENSOCUG00000017097	-	92	53.261	ENSOMEG00000007824	smn1	94	52.574	Oryzias_melastigma
ENSOCUG00000017097	-	91	74.632	ENSOGAG00000031414	-	96	74.820	Otolemur_garnettii
ENSOCUG00000017097	-	94	81.091	ENSOARG00000005425	-	100	79.636	Ovis_aries
ENSOCUG00000017097	-	99	82.534	ENSPPAG00000036640	-	99	82.534	Pan_paniscus
ENSOCUG00000017097	-	99	85.567	ENSPPRG00000005575	-	100	85.567	Panthera_pardus
ENSOCUG00000017097	-	99	85.274	ENSPTIG00000007745	-	100	85.274	Panthera_tigris_altaica
ENSOCUG00000017097	-	99	82.034	ENSPTRG00000016955	-	99	82.034	Pan_troglodytes
ENSOCUG00000017097	-	99	84.247	ENSPANG00000013601	-	99	84.247	Papio_anubis
ENSOCUG00000017097	-	98	80.277	ENSPANG00000000253	-	98	80.277	Papio_anubis
ENSOCUG00000017097	-	91	53.532	ENSPKIG00000011096	smn1	94	53.008	Paramormyrops_kingsleyae
ENSOCUG00000017097	-	92	59.206	ENSPSIG00000014787	-	90	61.011	Pelodiscus_sinensis
ENSOCUG00000017097	-	92	50.923	ENSPMGG00000012285	smn1	94	50.000	Periophthalmus_magnuspinnatus
ENSOCUG00000017097	-	89	42.912	ENSPMAG00000005004	smn1	95	39.576	Petromyzon_marinus
ENSOCUG00000017097	-	99	70.671	ENSPCIG00000025764	-	100	71.127	Phascolarctos_cinereus
ENSOCUG00000017097	-	92	52.190	ENSPFOG00000007786	smn1	94	52.030	Poecilia_formosa
ENSOCUG00000017097	-	92	52.555	ENSPLAG00000012071	smn1	94	52.399	Poecilia_latipinna
ENSOCUG00000017097	-	92	52.190	ENSPMEG00000017085	smn1	94	52.030	Poecilia_mexicana
ENSOCUG00000017097	-	92	53.285	ENSPREG00000005824	smn1	94	52.768	Poecilia_reticulata
ENSOCUG00000017097	-	85	59.751	ENSPPYG00000019189	-	99	59.751	Pongo_abelii
ENSOCUG00000017097	-	90	83.146	ENSPPYG00000015533	-	96	83.146	Pongo_abelii
ENSOCUG00000017097	-	90	80.224	ENSPCAG00000004187	-	100	79.851	Procavia_capensis
ENSOCUG00000017097	-	89	67.829	ENSPCOG00000022307	-	100	69.434	Propithecus_coquereli
ENSOCUG00000017097	-	95	88.172	ENSPVAG00000005977	-	100	87.329	Pteropus_vampyrus
ENSOCUG00000017097	-	91	49.477	ENSPNYG00000014148	smn1	94	55.556	Pundamilia_nyererei
ENSOCUG00000017097	-	92	49.097	ENSPNAG00000014007	smn1	83	50.735	Pygocentrus_nattereri
ENSOCUG00000017097	-	99	77.740	ENSRNOG00000018067	Smn1	100	77.740	Rattus_norvegicus
ENSOCUG00000017097	-	99	84.247	ENSRBIG00000037052	-	99	84.247	Rhinopithecus_bieti
ENSOCUG00000017097	-	96	73.285	ENSRBIG00000036775	-	97	72.662	Rhinopithecus_bieti
ENSOCUG00000017097	-	99	84.247	ENSRROG00000039399	-	99	84.247	Rhinopithecus_roxellana
ENSOCUG00000017097	-	99	71.731	ENSRROG00000031088	-	99	70.671	Rhinopithecus_roxellana
ENSOCUG00000017097	-	82	76.494	ENSSBOG00000020112	-	87	76.494	Saimiri_boliviensis_boliviensis
ENSOCUG00000017097	-	99	82.353	ENSSBOG00000011665	-	99	82.353	Saimiri_boliviensis_boliviensis
ENSOCUG00000017097	-	99	70.280	ENSSHAG00000001499	-	100	69.259	Sarcophilus_harrisii
ENSOCUG00000017097	-	92	50.929	ENSSFOG00015015507	smn1	94	52.593	Scleropages_formosus
ENSOCUG00000017097	-	92	45.714	ENSSMAG00000007922	smn1	94	54.244	Scophthalmus_maximus
ENSOCUG00000017097	-	92	49.477	ENSSDUG00000018533	smn1	94	50.000	Seriola_dumerili
ENSOCUG00000017097	-	92	49.826	ENSSLDG00000021135	smn1	94	50.352	Seriola_lalandi_dorsalis
ENSOCUG00000017097	-	96	62.230	ENSSPUG00000000373	-	96	62.455	Sphenodon_punctatus
ENSOCUG00000017097	-	92	53.030	ENSSPAG00000004345	smn1	94	53.137	Stegastes_partitus
ENSOCUG00000017097	-	100	84.983	ENSSSCG00000016970	-	100	86.007	Sus_scrofa
ENSOCUG00000017097	-	96	67.033	ENSSSCG00000029127	-	97	67.025	Sus_scrofa
ENSOCUG00000017097	-	72	60.294	ENSSSCG00000033865	-	90	61.224	Sus_scrofa
ENSOCUG00000017097	-	93	58.845	ENSTGUG00000001548	-	99	56.491	Taeniopygia_guttata
ENSOCUG00000017097	-	92	46.545	ENSTRUG00000000736	smn	95	48.872	Takifugu_rubripes
ENSOCUG00000017097	-	92	44.876	ENSTNIG00000009892	smn1	95	49.275	Tetraodon_nigroviridis
ENSOCUG00000017097	-	68	87.047	ENSTBEG00000002399	-	93	87.565	Tupaia_belangeri
ENSOCUG00000017097	-	96	85.971	ENSTTRG00000005080	-	100	84.880	Tursiops_truncatus
ENSOCUG00000017097	-	65	88.587	ENSUAMG00000024947	-	71	88.205	Ursus_americanus
ENSOCUG00000017097	-	96	87.544	ENSUMAG00000007842	-	75	87.329	Ursus_maritimus
ENSOCUG00000017097	-	91	72.556	ENSVPAG00000009887	-	100	72.302	Vicugna_pacos
ENSOCUG00000017097	-	95	87.097	ENSVVUG00000006934	-	100	86.552	Vulpes_vulpes
ENSOCUG00000017097	-	90	36.071	ENSXETG00000004912	-	77	62.069	Xenopus_tropicalis
ENSOCUG00000017097	-	93	56.827	ENSXETG00000018189	smn2	96	55.036	Xenopus_tropicalis
ENSOCUG00000017097	-	92	50.000	ENSXMAG00000001521	smn1	95	52.381	Xiphophorus_maculatus