EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000017359 (Gene tree)
Gene ID: 100358159
Gene Symbol: LSM8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 7397 bases
Position: chr7:26908066-26915462
Accession: 100358159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000016838	LSM	PF01423.22	2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000017357	LSM8-201	294	XM_002712115	ENSOCUP00000016838	97 (aa)	XP_002712161	G1TIR7

Gene Model

Click here to download ENSOCUG00000017359's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03018	RNA degradation	KEGG
ocu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000017359's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000017359	LSM8	92	33.708	ENSOCUG00000015399	LSM1	65	33.708

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000017359	LSM8	100	98.969	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
ENSOCUG00000017359	LSM8	100	91.753	ENSAPOG00000008649	lsm8	100	91.753	Acanthochromis_polyacanthus
ENSOCUG00000017359	LSM8	100	98.969	ENSAMEG00000001162	LSM8	100	98.969	Ailuropoda_melanoleuca
ENSOCUG00000017359	LSM8	77	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSOCUG00000017359	LSM8	100	91.753	ENSAOCG00000013926	lsm8	100	91.753	Amphiprion_ocellaris
ENSOCUG00000017359	LSM8	100	91.753	ENSAPEG00000023502	lsm8	100	91.753	Amphiprion_percula
ENSOCUG00000017359	LSM8	77	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSOCUG00000017359	LSM8	95	91.489	ENSAPLG00000005115	LSM8	95	91.489	Anas_platyrhynchos
ENSOCUG00000017359	LSM8	100	98.969	ENSANAG00000027771	LSM8	100	98.969	Aotus_nancymaae
ENSOCUG00000017359	LSM8	100	91.753	ENSACLG00000011253	lsm8	100	91.753	Astatotilapia_calliptera
ENSOCUG00000017359	LSM8	100	93.814	ENSAMXG00000042902	lsm8	100	93.814	Astyanax_mexicanus
ENSOCUG00000017359	LSM8	100	98.969	ENSBTAG00000012649	LSM8	100	98.969	Bos_taurus
ENSOCUG00000017359	LSM8	98	57.895	WBGene00003082	lsm-8	96	57.895	Caenorhabditis_elegans
ENSOCUG00000017359	LSM8	100	98.969	ENSCJAG00000046406	LSM8	100	98.969	Callithrix_jacchus
ENSOCUG00000017359	LSM8	99	98.958	ENSCAFG00000016459	LSM8	96	98.958	Canis_familiaris
ENSOCUG00000017359	LSM8	100	98.969	ENSCAFG00020007643	-	100	98.969	Canis_lupus_dingo
ENSOCUG00000017359	LSM8	89	97.674	ENSCAFG00020012800	-	66	97.674	Canis_lupus_dingo
ENSOCUG00000017359	LSM8	88	100.000	ENSCHIG00000014201	LSM8	90	100.000	Capra_hircus
ENSOCUG00000017359	LSM8	100	98.969	ENSTSYG00000032434	LSM8	100	98.969	Carlito_syrichta
ENSOCUG00000017359	LSM8	76	98.649	ENSCAPG00000008253	LSM8	100	98.649	Cavia_aperea
ENSOCUG00000017359	LSM8	100	98.969	ENSCPOG00000035673	LSM8	100	98.969	Cavia_porcellus
ENSOCUG00000017359	LSM8	100	98.969	ENSCCAG00000021329	LSM8	100	98.969	Cebus_capucinus
ENSOCUG00000017359	LSM8	100	98.969	ENSCATG00000045302	LSM8	100	98.969	Cercocebus_atys
ENSOCUG00000017359	LSM8	100	98.969	ENSCLAG00000003726	LSM8	100	98.969	Chinchilla_lanigera
ENSOCUG00000017359	LSM8	100	98.969	ENSCSAG00000010802	-	100	98.969	Chlorocebus_sabaeus
ENSOCUG00000017359	LSM8	100	94.845	ENSCSAG00000019007	-	100	94.845	Chlorocebus_sabaeus
ENSOCUG00000017359	LSM8	88	100.000	ENSCPBG00000008154	LSM8	87	100.000	Chrysemys_picta_bellii
ENSOCUG00000017359	LSM8	100	74.227	ENSCING00000024877	-	100	74.227	Ciona_intestinalis
ENSOCUG00000017359	LSM8	100	98.969	ENSCANG00000040728	LSM8	100	98.969	Colobus_angolensis_palliatus
ENSOCUG00000017359	LSM8	100	98.969	ENSCGRG00001000450	Lsm8	100	98.969	Cricetulus_griseus_chok1gshd
ENSOCUG00000017359	LSM8	88	100.000	ENSCGRG00000005587	Lsm8	100	100.000	Cricetulus_griseus_crigri
ENSOCUG00000017359	LSM8	100	79.381	ENSCSEG00000004164	lsm8	100	79.381	Cynoglossus_semilaevis
ENSOCUG00000017359	LSM8	100	90.722	ENSCVAG00000020547	lsm8	100	90.722	Cyprinodon_variegatus
ENSOCUG00000017359	LSM8	100	90.722	ENSDARG00000091656	lsm8	100	90.722	Danio_rerio
ENSOCUG00000017359	LSM8	100	98.969	ENSDNOG00000034613	LSM8	100	98.969	Dasypus_novemcinctus
ENSOCUG00000017359	LSM8	100	98.969	ENSDORG00000027868	Lsm8	100	98.969	Dipodomys_ordii
ENSOCUG00000017359	LSM8	98	68.421	FBgn0035271	CG2021	99	68.421	Drosophila_melanogaster
ENSOCUG00000017359	LSM8	100	97.938	ENSETEG00000011594	LSM8	100	97.938	Echinops_telfairi
ENSOCUG00000017359	LSM8	76	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSOCUG00000017359	LSM8	100	98.969	ENSEASG00005008932	LSM8	62	98.969	Equus_asinus_asinus
ENSOCUG00000017359	LSM8	88	100.000	ENSECAG00000024025	LSM8	77	100.000	Equus_caballus
ENSOCUG00000017359	LSM8	100	90.722	ENSELUG00000010138	lsm8	100	90.722	Esox_lucius
ENSOCUG00000017359	LSM8	86	73.494	ENSFCAG00000044794	-	83	73.494	Felis_catus
ENSOCUG00000017359	LSM8	100	98.969	ENSFCAG00000036620	-	100	98.969	Felis_catus
ENSOCUG00000017359	LSM8	100	97.938	ENSFALG00000010023	LSM8	100	97.938	Ficedula_albicollis
ENSOCUG00000017359	LSM8	100	98.969	ENSFDAG00000019530	LSM8	100	98.969	Fukomys_damarensis
ENSOCUG00000017359	LSM8	100	91.753	ENSFHEG00000013729	lsm8	100	91.753	Fundulus_heteroclitus
ENSOCUG00000017359	LSM8	100	97.938	ENSGALG00000009110	LSM8	100	97.938	Gallus_gallus
ENSOCUG00000017359	LSM8	100	90.722	ENSGAFG00000001135	lsm8	100	90.722	Gambusia_affinis
ENSOCUG00000017359	LSM8	100	98.969	ENSGAGG00000017366	LSM8	100	98.969	Gopherus_agassizii
ENSOCUG00000017359	LSM8	100	98.969	ENSGGOG00000041883	LSM8	100	98.969	Gorilla_gorilla
ENSOCUG00000017359	LSM8	100	91.753	ENSHBUG00000003646	lsm8	100	91.753	Haplochromis_burtoni
ENSOCUG00000017359	LSM8	100	92.784	ENSHGLG00000019782	-	100	92.784	Heterocephalus_glaber_female
ENSOCUG00000017359	LSM8	71	98.551	ENSHGLG00000001988	-	99	98.551	Heterocephalus_glaber_female
ENSOCUG00000017359	LSM8	99	95.833	ENSHGLG00100003934	-	95	95.833	Heterocephalus_glaber_male
ENSOCUG00000017359	LSM8	100	94.845	ENSHGLG00100012166	-	100	94.845	Heterocephalus_glaber_male
ENSOCUG00000017359	LSM8	100	90.722	ENSHCOG00000005037	lsm8	100	90.722	Hippocampus_comes
ENSOCUG00000017359	LSM8	100	93.814	ENSIPUG00000019811	NAA38	100	93.814	Ictalurus_punctatus
ENSOCUG00000017359	LSM8	88	88.235	ENSSTOG00000034801	-	79	88.235	Ictidomys_tridecemlineatus
ENSOCUG00000017359	LSM8	100	98.969	ENSSTOG00000009039	LSM8	100	98.969	Ictidomys_tridecemlineatus
ENSOCUG00000017359	LSM8	100	98.969	ENSJJAG00000009031	Lsm8	99	98.969	Jaculus_jaculus
ENSOCUG00000017359	LSM8	100	91.753	ENSKMAG00000018983	lsm8	100	91.753	Kryptolebias_marmoratus
ENSOCUG00000017359	LSM8	100	93.814	ENSLACG00000010231	LSM8	100	93.814	Latimeria_chalumnae
ENSOCUG00000017359	LSM8	100	92.784	ENSLOCG00000015580	lsm8	100	92.784	Lepisosteus_oculatus
ENSOCUG00000017359	LSM8	100	100.000	ENSLAFG00000011242	LSM8	100	100.000	Loxodonta_africana
ENSOCUG00000017359	LSM8	100	94.845	ENSMFAG00000013044	-	100	94.845	Macaca_fascicularis
ENSOCUG00000017359	LSM8	100	98.969	ENSMFAG00000035798	LSM8	100	98.969	Macaca_fascicularis
ENSOCUG00000017359	LSM8	100	98.969	ENSMMUG00000046401	LSM8	100	97.297	Macaca_mulatta
ENSOCUG00000017359	LSM8	100	98.969	ENSMNEG00000036764	-	100	98.969	Macaca_nemestrina
ENSOCUG00000017359	LSM8	77	96.000	ENSMNEG00000011141	-	100	96.000	Macaca_nemestrina
ENSOCUG00000017359	LSM8	100	83.505	ENSMLEG00000039324	-	100	83.505	Mandrillus_leucophaeus
ENSOCUG00000017359	LSM8	100	98.969	ENSMLEG00000035828	-	100	98.969	Mandrillus_leucophaeus
ENSOCUG00000017359	LSM8	77	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSOCUG00000017359	LSM8	100	91.753	ENSMZEG00005019138	lsm8	100	91.753	Maylandia_zebra
ENSOCUG00000017359	LSM8	100	97.938	ENSMGAG00000008808	LSM8	100	97.938	Meleagris_gallopavo
ENSOCUG00000017359	LSM8	74	93.056	ENSMAUG00000020287	-	100	90.541	Mesocricetus_auratus
ENSOCUG00000017359	LSM8	100	91.753	ENSMAUG00000015721	-	100	91.753	Mesocricetus_auratus
ENSOCUG00000017359	LSM8	100	79.381	ENSMAUG00000015356	-	100	79.381	Mesocricetus_auratus
ENSOCUG00000017359	LSM8	100	98.969	ENSMICG00000042730	LSM8	100	98.969	Microcebus_murinus
ENSOCUG00000017359	LSM8	100	98.969	ENSMOCG00000001688	Lsm8	100	98.969	Microtus_ochrogaster
ENSOCUG00000017359	LSM8	77	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSOCUG00000017359	LSM8	75	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSOCUG00000017359	LSM8	100	92.784	ENSMALG00000000405	lsm8	100	92.784	Monopterus_albus
ENSOCUG00000017359	LSM8	100	98.969	MGP_CAROLIEiJ_G0028125	-	100	98.969	Mus_caroli
ENSOCUG00000017359	LSM8	100	98.969	ENSMUSG00000044155	Lsm8	100	98.969	Mus_musculus
ENSOCUG00000017359	LSM8	100	98.969	MGP_PahariEiJ_G0021881	Lsm8	100	100.000	Mus_pahari
ENSOCUG00000017359	LSM8	100	98.969	MGP_SPRETEiJ_G0029125	-	100	98.969	Mus_spretus
ENSOCUG00000017359	LSM8	100	97.938	ENSMLUG00000027762	-	100	97.938	Myotis_lucifugus
ENSOCUG00000017359	LSM8	100	98.969	ENSMLUG00000006837	-	100	98.969	Myotis_lucifugus
ENSOCUG00000017359	LSM8	100	98.969	ENSNGAG00000016554	Lsm8	100	98.969	Nannospalax_galili
ENSOCUG00000017359	LSM8	100	91.753	ENSNBRG00000014441	lsm8	100	91.753	Neolamprologus_brichardi
ENSOCUG00000017359	LSM8	100	98.969	ENSNLEG00000011768	LSM8	100	98.969	Nomascus_leucogenys
ENSOCUG00000017359	LSM8	100	87.629	ENSMEUG00000007801	LSM8	100	87.629	Notamacropus_eugenii
ENSOCUG00000017359	LSM8	88	100.000	ENSOPRG00000014809	LSM8	100	100.000	Ochotona_princeps
ENSOCUG00000017359	LSM8	90	81.609	ENSODEG00000020290	-	100	81.609	Octodon_degus
ENSOCUG00000017359	LSM8	100	98.969	ENSODEG00000000418	-	100	98.969	Octodon_degus
ENSOCUG00000017359	LSM8	100	97.938	ENSOANG00000014536	LSM8	100	97.938	Ornithorhynchus_anatinus
ENSOCUG00000017359	LSM8	100	80.412	ENSORLG00000017432	lsm8	100	80.412	Oryzias_latipes
ENSOCUG00000017359	LSM8	100	80.412	ENSORLG00020004376	lsm8	100	80.412	Oryzias_latipes_hni
ENSOCUG00000017359	LSM8	100	91.753	ENSORLG00015003757	lsm8	100	91.753	Oryzias_latipes_hsok
ENSOCUG00000017359	LSM8	100	79.381	ENSOMEG00000022509	lsm8	100	80.412	Oryzias_melastigma
ENSOCUG00000017359	LSM8	100	98.969	ENSOGAG00000013377	LSM8	100	98.969	Otolemur_garnettii
ENSOCUG00000017359	LSM8	100	98.969	ENSOARG00000017974	LSM8	100	98.969	Ovis_aries
ENSOCUG00000017359	LSM8	77	100.000	ENSPPAG00000043228	-	100	100.000	Pan_paniscus
ENSOCUG00000017359	LSM8	100	98.969	ENSPPRG00000006444	LSM8	100	98.969	Panthera_pardus
ENSOCUG00000017359	LSM8	100	98.969	ENSPTIG00000004722	LSM8	100	98.969	Panthera_tigris_altaica
ENSOCUG00000017359	LSM8	77	100.000	ENSPTRG00000046596	-	100	100.000	Pan_troglodytes
ENSOCUG00000017359	LSM8	100	92.784	ENSPANG00000019395	-	100	92.784	Papio_anubis
ENSOCUG00000017359	LSM8	100	98.969	ENSPANG00000035470	-	100	98.969	Papio_anubis
ENSOCUG00000017359	LSM8	91	95.455	ENSPKIG00000006092	lsm8	89	95.455	Paramormyrops_kingsleyae
ENSOCUG00000017359	LSM8	77	100.000	ENSPSIG00000017054	LSM8	100	100.000	Pelodiscus_sinensis
ENSOCUG00000017359	LSM8	77	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSOCUG00000017359	LSM8	76	97.297	ENSPEMG00000009153	Lsm8	100	97.297	Peromyscus_maniculatus_bairdii
ENSOCUG00000017359	LSM8	97	98.936	ENSPCIG00000021467	LSM8	98	98.936	Phascolarctos_cinereus
ENSOCUG00000017359	LSM8	100	90.722	ENSPFOG00000012340	lsm8	100	90.722	Poecilia_formosa
ENSOCUG00000017359	LSM8	88	94.118	ENSPLAG00000000516	lsm8	89	94.118	Poecilia_latipinna
ENSOCUG00000017359	LSM8	100	90.722	ENSPMEG00000022567	lsm8	100	90.722	Poecilia_mexicana
ENSOCUG00000017359	LSM8	75	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSOCUG00000017359	LSM8	100	98.969	ENSPPYG00000017942	LSM8	100	98.969	Pongo_abelii
ENSOCUG00000017359	LSM8	100	98.969	ENSPCOG00000003309	-	100	98.969	Propithecus_coquereli
ENSOCUG00000017359	LSM8	99	77.083	ENSPCOG00000017982	-	99	77.083	Propithecus_coquereli
ENSOCUG00000017359	LSM8	88	98.824	ENSPVAG00000000990	LSM8	100	98.824	Pteropus_vampyrus
ENSOCUG00000017359	LSM8	100	91.753	ENSPNYG00000011448	lsm8	100	91.753	Pundamilia_nyererei
ENSOCUG00000017359	LSM8	100	93.814	ENSPNAG00000010252	lsm8	100	93.814	Pygocentrus_nattereri
ENSOCUG00000017359	LSM8	100	98.969	ENSRNOG00000058677	Lsm8	100	98.969	Rattus_norvegicus
ENSOCUG00000017359	LSM8	100	98.969	ENSRBIG00000032851	LSM8	100	98.969	Rhinopithecus_bieti
ENSOCUG00000017359	LSM8	100	98.969	ENSRROG00000039618	LSM8	100	98.969	Rhinopithecus_roxellana
ENSOCUG00000017359	LSM8	100	98.969	ENSSBOG00000023223	LSM8	100	98.969	Saimiri_boliviensis_boliviensis
ENSOCUG00000017359	LSM8	100	98.969	ENSSHAG00000018435	-	100	98.969	Sarcophilus_harrisii
ENSOCUG00000017359	LSM8	100	90.722	ENSSFOG00015004412	lsm8	100	90.722	Scleropages_formosus
ENSOCUG00000017359	LSM8	77	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSOCUG00000017359	LSM8	100	91.753	ENSSDUG00000014702	lsm8	100	91.753	Seriola_dumerili
ENSOCUG00000017359	LSM8	77	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSOCUG00000017359	LSM8	74	100.000	ENSSARG00000009628	-	100	100.000	Sorex_araneus
ENSOCUG00000017359	LSM8	100	98.969	ENSSPUG00000017419	LSM8	100	98.969	Sphenodon_punctatus
ENSOCUG00000017359	LSM8	100	91.753	ENSSPAG00000021422	lsm8	100	91.753	Stegastes_partitus
ENSOCUG00000017359	LSM8	100	98.969	ENSSSCG00000021652	LSM8	100	98.969	Sus_scrofa
ENSOCUG00000017359	LSM8	100	96.907	ENSTGUG00000004730	-	100	96.907	Taeniopygia_guttata
ENSOCUG00000017359	LSM8	100	95.876	ENSTGUG00000016823	-	100	95.876	Taeniopygia_guttata
ENSOCUG00000017359	LSM8	100	91.753	ENSTRUG00000025192	lsm8	100	91.753	Takifugu_rubripes
ENSOCUG00000017359	LSM8	100	91.753	ENSTNIG00000002864	lsm8	100	91.753	Tetraodon_nigroviridis
ENSOCUG00000017359	LSM8	100	98.969	ENSTTRG00000001023	LSM8	100	98.969	Tursiops_truncatus
ENSOCUG00000017359	LSM8	88	100.000	ENSUAMG00000006943	-	89	100.000	Ursus_americanus
ENSOCUG00000017359	LSM8	88	100.000	ENSUMAG00000003073	LSM8	90	100.000	Ursus_maritimus
ENSOCUG00000017359	LSM8	100	98.969	ENSVPAG00000001530	LSM8	100	98.969	Vicugna_pacos
ENSOCUG00000017359	LSM8	77	97.333	ENSVVUG00000013248	-	82	97.333	Vulpes_vulpes
ENSOCUG00000017359	LSM8	90	96.552	ENSXETG00000021829	lsm8	90	96.552	Xenopus_tropicalis
ENSOCUG00000017359	LSM8	100	88.660	ENSXCOG00000012938	lsm8	100	88.660	Xiphophorus_couchianus
ENSOCUG00000017359	LSM8	100	90.722	ENSXMAG00000025919	lsm8	100	90.722	Xiphophorus_maculatus