EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000017435 (Gene tree)
Gene ID: 100342194
Gene Symbol: RIF1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 78201 bases
Position: chr7:90406407-90484607
Accession: 100342194
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000022283	Rif1_N	PF12231.8	8.6e-75	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000024240	RIF1-201	9411	XM_002712162	ENSOCUP00000022283	2455 (aa)	XP_002712208	G1TYW6

Gene Model

Click here to download ENSOCUG00000017435's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000017435's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000017435	RIF1	100	76.653	ENSG00000080345	RIF1	97	87.698	Homo_sapiens
ENSOCUG00000017435	RIF1	99	77.131	ENSAMEG00000008461	RIF1	100	76.889	Ailuropoda_melanoleuca
ENSOCUG00000017435	RIF1	67	49.317	ENSACIG00000017765	rif1	73	48.681	Amphilophus_citrinellus
ENSOCUG00000017435	RIF1	73	47.674	ENSAOCG00000017231	rif1	52	48.487	Amphiprion_ocellaris
ENSOCUG00000017435	RIF1	77	54.612	ENSAPEG00000013228	rif1	74	54.380	Amphiprion_percula
ENSOCUG00000017435	RIF1	86	41.398	ENSATEG00000022887	rif1	74	47.498	Anabas_testudineus
ENSOCUG00000017435	RIF1	90	50.082	ENSACAG00000003714	RIF1	96	49.643	Anolis_carolinensis
ENSOCUG00000017435	RIF1	100	76.169	ENSANAG00000024840	RIF1	100	76.008	Aotus_nancymaae
ENSOCUG00000017435	RIF1	94	75.871	ENSBTAG00000021020	RIF1	99	75.838	Bos_taurus
ENSOCUG00000017435	RIF1	100	76.160	ENSCJAG00000003138	RIF1	100	75.998	Callithrix_jacchus
ENSOCUG00000017435	RIF1	100	76.260	ENSCAFG00000005670	RIF1	97	75.977	Canis_familiaris
ENSOCUG00000017435	RIF1	100	75.738	ENSCAFG00020016401	RIF1	100	75.455	Canis_lupus_dingo
ENSOCUG00000017435	RIF1	100	75.373	ENSCHIG00000020327	RIF1	100	75.342	Capra_hircus
ENSOCUG00000017435	RIF1	99	75.212	ENSTSYG00000008861	RIF1	100	75.212	Carlito_syrichta
ENSOCUG00000017435	RIF1	83	74.880	ENSCAPG00000008957	RIF1	96	74.880	Cavia_aperea
ENSOCUG00000017435	RIF1	99	69.802	ENSCPOG00000037898	RIF1	99	69.628	Cavia_porcellus
ENSOCUG00000017435	RIF1	100	75.071	ENSCCAG00000024760	RIF1	100	75.071	Cebus_capucinus
ENSOCUG00000017435	RIF1	100	76.492	ENSCATG00000033353	RIF1	100	76.492	Cercocebus_atys
ENSOCUG00000017435	RIF1	96	71.381	ENSCLAG00000001517	RIF1	99	71.423	Chinchilla_lanigera
ENSOCUG00000017435	RIF1	100	76.815	ENSCSAG00000016089	RIF1	100	76.815	Chlorocebus_sabaeus
ENSOCUG00000017435	RIF1	97	76.957	ENSCHOG00000007187	RIF1	97	76.957	Choloepus_hoffmanni
ENSOCUG00000017435	RIF1	90	66.667	ENSCPBG00000025885	RIF1	96	61.327	Chrysemys_picta_bellii
ENSOCUG00000017435	RIF1	100	75.333	ENSCANG00000028962	RIF1	100	76.211	Colobus_angolensis_palliatus
ENSOCUG00000017435	RIF1	99	68.119	ENSCGRG00001024589	Rif1	100	68.200	Cricetulus_griseus_chok1gshd
ENSOCUG00000017435	RIF1	99	69.218	ENSCGRG00000010713	Rif1	100	69.259	Cricetulus_griseus_crigri
ENSOCUG00000017435	RIF1	62	54.656	ENSCSEG00000003945	rif1	69	48.829	Cynoglossus_semilaevis
ENSOCUG00000017435	RIF1	64	47.181	ENSCVAG00000022479	rif1	68	47.181	Cyprinodon_variegatus
ENSOCUG00000017435	RIF1	50	51.127	ENSDARG00000062650	rif1	51	50.717	Danio_rerio
ENSOCUG00000017435	RIF1	100	73.038	ENSDNOG00000011194	RIF1	97	73.471	Dasypus_novemcinctus
ENSOCUG00000017435	RIF1	94	70.682	ENSETEG00000012421	RIF1	95	70.682	Echinops_telfairi
ENSOCUG00000017435	RIF1	95	91.749	ENSEASG00005023434	RIF1	99	92.359	Equus_asinus_asinus
ENSOCUG00000017435	RIF1	96	89.426	ENSECAG00000012679	RIF1	100	89.275	Equus_caballus
ENSOCUG00000017435	RIF1	62	50.398	ENSELUG00000006826	rif1	56	49.765	Esox_lucius
ENSOCUG00000017435	RIF1	100	76.963	ENSFCAG00000029742	RIF1	100	77.084	Felis_catus
ENSOCUG00000017435	RIF1	77	64.329	ENSFALG00000013874	RIF1	93	55.690	Ficedula_albicollis
ENSOCUG00000017435	RIF1	99	72.955	ENSFDAG00000006538	RIF1	99	73.128	Fukomys_damarensis
ENSOCUG00000017435	RIF1	62	49.959	ENSFHEG00000013721	rif1	75	49.052	Fundulus_heteroclitus
ENSOCUG00000017435	RIF1	54	50.000	ENSGMOG00000003517	rif1	82	50.000	Gadus_morhua
ENSOCUG00000017435	RIF1	79	65.455	ENSGALG00000012484	RIF1	91	65.758	Gallus_gallus
ENSOCUG00000017435	RIF1	64	50.358	ENSGAFG00000017196	rif1	68	52.770	Gambusia_affinis
ENSOCUG00000017435	RIF1	59	55.691	ENSGACG00000008579	rif1	65	55.870	Gasterosteus_aculeatus
ENSOCUG00000017435	RIF1	85	70.571	ENSGAGG00000012595	RIF1	93	71.171	Gopherus_agassizii
ENSOCUG00000017435	RIF1	90	88.252	ENSGGOG00000040178	RIF1	96	88.252	Gorilla_gorilla
ENSOCUG00000017435	RIF1	62	56.410	ENSHBUG00000007125	rif1	66	56.410	Haplochromis_burtoni
ENSOCUG00000017435	RIF1	95	73.228	ENSHGLG00100009807	RIF1	99	73.100	Heterocephalus_glaber_male
ENSOCUG00000017435	RIF1	64	48.687	ENSHCOG00000015943	rif1	60	47.871	Hippocampus_comes
ENSOCUG00000017435	RIF1	50	51.685	ENSIPUG00000021703	rif1	51	51.752	Ictalurus_punctatus
ENSOCUG00000017435	RIF1	100	75.934	ENSSTOG00000020712	RIF1	100	75.974	Ictidomys_tridecemlineatus
ENSOCUG00000017435	RIF1	99	68.147	ENSJJAG00000023000	Rif1	100	68.470	Jaculus_jaculus
ENSOCUG00000017435	RIF1	64	48.984	ENSKMAG00000002852	rif1	68	49.062	Kryptolebias_marmoratus
ENSOCUG00000017435	RIF1	63	50.000	ENSLBEG00000023196	rif1	63	48.173	Labrus_bergylta
ENSOCUG00000017435	RIF1	85	61.516	ENSLACG00000005425	RIF1	89	61.516	Latimeria_chalumnae
ENSOCUG00000017435	RIF1	83	47.139	ENSLOCG00000002657	rif1	91	47.293	Lepisosteus_oculatus
ENSOCUG00000017435	RIF1	99	75.020	ENSLAFG00000009796	RIF1	100	74.929	Loxodonta_africana
ENSOCUG00000017435	RIF1	100	76.492	ENSMFAG00000032233	RIF1	100	76.492	Macaca_fascicularis
ENSOCUG00000017435	RIF1	100	76.492	ENSMMUG00000008611	RIF1	100	76.492	Macaca_mulatta
ENSOCUG00000017435	RIF1	100	76.452	ENSMNEG00000031616	RIF1	100	76.452	Macaca_nemestrina
ENSOCUG00000017435	RIF1	100	76.573	ENSMLEG00000042945	RIF1	100	76.573	Mandrillus_leucophaeus
ENSOCUG00000017435	RIF1	58	50.768	ENSMAMG00000001745	rif1	59	50.678	Mastacembelus_armatus
ENSOCUG00000017435	RIF1	67	50.077	ENSMZEG00005020920	rif1	72	49.387	Maylandia_zebra
ENSOCUG00000017435	RIF1	84	59.669	ENSMGAG00000012732	RIF1	92	59.945	Meleagris_gallopavo
ENSOCUG00000017435	RIF1	98	88.301	ENSMAUG00000013158	Rif1	100	88.301	Mesocricetus_auratus
ENSOCUG00000017435	RIF1	100	78.678	ENSMICG00000046127	RIF1	100	78.848	Microcebus_murinus
ENSOCUG00000017435	RIF1	99	68.917	ENSMOCG00000009381	Rif1	100	68.917	Microtus_ochrogaster
ENSOCUG00000017435	RIF1	67	50.040	ENSMMOG00000006519	rif1	69	49.079	Mola_mola
ENSOCUG00000017435	RIF1	100	59.216	ENSMODG00000003703	RIF1	100	58.896	Monodelphis_domestica
ENSOCUG00000017435	RIF1	64	48.887	ENSMALG00000016759	rif1	73	48.928	Monopterus_albus
ENSOCUG00000017435	RIF1	99	67.624	MGP_CAROLIEiJ_G0023555	Rif1	100	67.624	Mus_caroli
ENSOCUG00000017435	RIF1	99	67.685	ENSMUSG00000036202	Rif1	100	67.685	Mus_musculus
ENSOCUG00000017435	RIF1	99	66.774	MGP_PahariEiJ_G0025006	Rif1	100	66.869	Mus_pahari
ENSOCUG00000017435	RIF1	99	67.785	MGP_SPRETEiJ_G0024476	Rif1	100	67.785	Mus_spretus
ENSOCUG00000017435	RIF1	100	75.897	ENSMPUG00000000371	RIF1	100	75.695	Mustela_putorius_furo
ENSOCUG00000017435	RIF1	90	73.991	ENSMLUG00000003376	RIF1	100	73.767	Myotis_lucifugus
ENSOCUG00000017435	RIF1	100	71.405	ENSNGAG00000009268	Rif1	100	71.723	Nannospalax_galili
ENSOCUG00000017435	RIF1	67	49.156	ENSNBRG00000014257	rif1	72	48.698	Neolamprologus_brichardi
ENSOCUG00000017435	RIF1	100	74.819	ENSNLEG00000010955	RIF1	100	75.000	Nomascus_leucogenys
ENSOCUG00000017435	RIF1	78	78.027	ENSMEUG00000007601	-	86	78.027	Notamacropus_eugenii
ENSOCUG00000017435	RIF1	99	70.044	ENSODEG00000003950	RIF1	99	70.351	Octodon_degus
ENSOCUG00000017435	RIF1	63	44.891	ENSONIG00000013657	rif1	60	49.581	Oreochromis_niloticus
ENSOCUG00000017435	RIF1	71	73.823	ENSOANG00000006078	-	74	73.917	Ornithorhynchus_anatinus
ENSOCUG00000017435	RIF1	64	47.340	ENSORLG00020001302	rif1	69	46.775	Oryzias_latipes_hni
ENSOCUG00000017435	RIF1	63	47.638	ENSORLG00015000009	rif1	68	47.319	Oryzias_latipes_hsok
ENSOCUG00000017435	RIF1	62	48.500	ENSOMEG00000021513	rif1	68	46.948	Oryzias_melastigma
ENSOCUG00000017435	RIF1	99	76.331	ENSOGAG00000006141	RIF1	99	76.340	Otolemur_garnettii
ENSOCUG00000017435	RIF1	100	75.786	ENSOARG00000008930	RIF1	100	75.755	Ovis_aries
ENSOCUG00000017435	RIF1	100	76.833	ENSPPAG00000023754	RIF1	100	76.833	Pan_paniscus
ENSOCUG00000017435	RIF1	100	76.762	ENSPPRG00000003618	RIF1	100	76.883	Panthera_pardus
ENSOCUG00000017435	RIF1	100	76.843	ENSPTIG00000020652	RIF1	100	76.963	Panthera_tigris_altaica
ENSOCUG00000017435	RIF1	100	76.712	ENSPTRG00000012534	RIF1	100	76.712	Pan_troglodytes
ENSOCUG00000017435	RIF1	100	76.492	ENSPANG00000008525	RIF1	100	76.492	Papio_anubis
ENSOCUG00000017435	RIF1	74	50.445	ENSPKIG00000004267	rif1	68	52.941	Paramormyrops_kingsleyae
ENSOCUG00000017435	RIF1	65	46.553	ENSPMGG00000016141	rif1	79	44.613	Periophthalmus_magnuspinnatus
ENSOCUG00000017435	RIF1	99	70.610	ENSPEMG00000000446	Rif1	99	70.569	Peromyscus_maniculatus_bairdii
ENSOCUG00000017435	RIF1	99	58.131	ENSPCIG00000009185	RIF1	99	58.730	Phascolarctos_cinereus
ENSOCUG00000017435	RIF1	51	51.020	ENSPFOG00000017804	rif1	53	50.710	Poecilia_formosa
ENSOCUG00000017435	RIF1	64	50.949	ENSPLAG00000017945	rif1	70	50.595	Poecilia_latipinna
ENSOCUG00000017435	RIF1	64	49.335	ENSPREG00000018052	rif1	66	53.695	Poecilia_reticulata
ENSOCUG00000017435	RIF1	100	76.694	ENSPPYG00000012846	RIF1	100	76.873	Pongo_abelii
ENSOCUG00000017435	RIF1	83	80.392	ENSPCAG00000009032	RIF1	83	80.392	Procavia_capensis
ENSOCUG00000017435	RIF1	100	79.026	ENSPCOG00000027888	RIF1	100	79.219	Propithecus_coquereli
ENSOCUG00000017435	RIF1	93	86.815	ENSPVAG00000014276	RIF1	95	86.815	Pteropus_vampyrus
ENSOCUG00000017435	RIF1	67	48.644	ENSPNYG00000012940	rif1	71	47.984	Pundamilia_nyererei
ENSOCUG00000017435	RIF1	50	52.377	ENSPNAG00000016685	rif1	51	52.236	Pygocentrus_nattereri
ENSOCUG00000017435	RIF1	99	67.056	ENSRNOG00000054901	Rif1	100	66.976	Rattus_norvegicus
ENSOCUG00000017435	RIF1	100	75.877	ENSRBIG00000003704	RIF1	100	76.058	Rhinopithecus_bieti
ENSOCUG00000017435	RIF1	100	76.613	ENSRROG00000028206	RIF1	100	76.793	Rhinopithecus_roxellana
ENSOCUG00000017435	RIF1	93	75.497	ENSSBOG00000029530	RIF1	96	75.324	Saimiri_boliviensis_boliviensis
ENSOCUG00000017435	RIF1	99	58.654	ENSSHAG00000018552	RIF1	100	57.762	Sarcophilus_harrisii
ENSOCUG00000017435	RIF1	63	53.473	ENSSFOG00015021539	rif1	69	53.231	Scleropages_formosus
ENSOCUG00000017435	RIF1	65	50.928	ENSSDUG00000015632	rif1	73	48.344	Seriola_dumerili
ENSOCUG00000017435	RIF1	61	84.068	ENSSARG00000007161	-	62	84.068	Sorex_araneus
ENSOCUG00000017435	RIF1	89	55.959	ENSSPUG00000003062	RIF1	96	56.000	Sphenodon_punctatus
ENSOCUG00000017435	RIF1	51	58.058	ENSSPAG00000018359	rif1	77	57.851	Stegastes_partitus
ENSOCUG00000017435	RIF1	100	76.269	ENSSSCG00000016395	RIF1	100	76.238	Sus_scrofa
ENSOCUG00000017435	RIF1	67	48.921	ENSTRUG00000015808	rif1	73	48.880	Takifugu_rubripes
ENSOCUG00000017435	RIF1	64	50.153	ENSTNIG00000011538	rif1	69	50.153	Tetraodon_nigroviridis
ENSOCUG00000017435	RIF1	82	86.076	ENSTBEG00000016082	RIF1	82	86.076	Tupaia_belangeri
ENSOCUG00000017435	RIF1	100	76.945	ENSTTRG00000011190	RIF1	100	76.824	Tursiops_truncatus
ENSOCUG00000017435	RIF1	86	86.428	ENSUAMG00000026385	RIF1	99	76.037	Ursus_americanus
ENSOCUG00000017435	RIF1	96	86.284	ENSUMAG00000000337	RIF1	99	85.798	Ursus_maritimus
ENSOCUG00000017435	RIF1	100	75.282	ENSVPAG00000002162	RIF1	100	75.413	Vicugna_pacos
ENSOCUG00000017435	RIF1	100	75.979	ENSVVUG00000011293	RIF1	100	75.535	Vulpes_vulpes
ENSOCUG00000017435	RIF1	84	60.831	ENSXETG00000004530	rif1	84	60.831	Xenopus_tropicalis
ENSOCUG00000017435	RIF1	53	46.751	ENSXMAG00000000506	rif1	54	47.589	Xiphophorus_maculatus