EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000017929 (Gene tree)
Gene ID: 100344349
Gene Symbol: -
Alias: -
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 24725 bases
Position: chr19:11670528-11695252
Accession: 100344349
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000015404	RNA_pol_Rpb1_5	PF04998.17	3.9e-101	1	1
ENSOCUP00000020422	RNA_pol_Rpb1_5	PF04998.17	5.4e-101	1	1
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	1	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	2	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	3	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	4	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	5	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	6	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	7	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	8	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	9	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	10	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	11	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	12	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	13	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	14	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	15	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	16	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	17	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	18	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	19	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	20	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	21	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	22	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	23	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	24	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	25	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	26	27
ENSOCUP00000020422	RNA_pol_Rpb1_R	PF05001.13	1.5e-16	27	27
ENSOCUP00000015404	RNA_pol_Rpb1_4	PF05000.17	2.3e-38	1	1
ENSOCUP00000020422	RNA_pol_Rpb1_4	PF05000.17	3.1e-38	1	1
ENSOCUP00000015404	RNA_pol_Rpb1_2	PF00623.20	7.3e-75	1	1
ENSOCUP00000020422	RNA_pol_Rpb1_2	PF00623.20	9.7e-75	1	1
ENSOCUP00000015404	RNA_pol_Rpb1_3	PF04983.18	4.7e-50	1	1
ENSOCUP00000020422	RNA_pol_Rpb1_3	PF04983.18	6e-50	1	1
ENSOCUP00000015404	RNA_pol_Rpb1_1	PF04997.12	3.5e-109	1	1
ENSOCUP00000020422	RNA_pol_Rpb1_1	PF04997.12	4.6e-109	1	1
ENSOCUP00000020422	RNA_pol_Rpb1_7	PF04990.12	1.7e-54	1	1
ENSOCUP00000015404	RNA_pol_Rpb1_7	PF04990.12	1.3e-51	1	1
ENSOCUP00000015404	RNA_pol_Rpb1_6	PF04992.14	9.3e-68	1	1
ENSOCUP00000020422	RNA_pol_Rpb1_6	PF04992.14	1.2e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000022277	-	5907	XM_008271076	ENSOCUP00000020422	1969 (aa)	-	G1TTQ1
ENSOCUT00000017930	-	5217	-	ENSOCUP00000015404	1739 (aa)	-	G1TES0

Gene Model

Click here to download ENSOCUG00000017929's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03020	RNA polymerase	KEGG
ocu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000017929's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000017929	-	59	38.806	ENSOCUG00000010138	POLR1A	62	38.806
ENSOCUG00000017929	-	84	34.024	ENSOCUG00000012450	POLR3A	98	34.092

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000017929	-	93	94.358	ENSAPOG00000006552	polr2a	91	93.256	Acanthochromis_polyacanthus
ENSOCUG00000017929	-	100	97.429	ENSAMEG00000016265	-	100	97.112	Ailuropoda_melanoleuca
ENSOCUG00000017929	-	100	91.754	ENSACIG00000015982	polr2a	99	88.563	Amphilophus_citrinellus
ENSOCUG00000017929	-	100	91.692	ENSAOCG00000004255	polr2a	99	88.506	Amphiprion_ocellaris
ENSOCUG00000017929	-	100	94.420	ENSAPEG00000012623	polr2a	99	90.460	Amphiprion_percula
ENSOCUG00000017929	-	100	94.296	ENSATEG00000019644	polr2a	99	90.345	Anabas_testudineus
ENSOCUG00000017929	-	100	97.952	ENSACAG00000014561	POLR2A	100	95.840	Anolis_carolinensis
ENSOCUG00000017929	-	100	97.768	ENSANAG00000020093	-	100	97.412	Aotus_nancymaae
ENSOCUG00000017929	-	100	94.110	ENSACLG00000006735	polr2a	99	90.172	Astatotilapia_calliptera
ENSOCUG00000017929	-	100	94.668	ENSAMXG00000020046	polr2a	99	90.690	Astyanax_mexicanus
ENSOCUG00000017929	-	100	97.768	ENSBTAG00000046765	POLR2A	100	97.362	Bos_taurus
ENSOCUG00000017929	-	99	69.859	WBGene00000123	ama-1	99	68.075	Caenorhabditis_elegans
ENSOCUG00000017929	-	100	97.710	ENSCAFG00000016532	POLR2A	100	97.477	Canis_familiaris
ENSOCUG00000017929	-	100	96.682	ENSCAFG00020007929	-	100	96.450	Canis_lupus_dingo
ENSOCUG00000017929	-	100	97.768	ENSCHIG00000027173	-	100	97.362	Capra_hircus
ENSOCUG00000017929	-	99	99.289	ENSTSYG00000012803	-	100	94.926	Carlito_syrichta
ENSOCUG00000017929	-	98	94.722	ENSCAPG00000001882	-	99	96.433	Cavia_aperea
ENSOCUG00000017929	-	100	96.805	ENSCPOG00000014812	-	99	96.381	Cavia_porcellus
ENSOCUG00000017929	-	100	97.768	ENSCCAG00000020938	-	100	97.412	Cebus_capucinus
ENSOCUG00000017929	-	100	97.710	ENSCATG00000013680	-	100	97.362	Cercocebus_atys
ENSOCUG00000017929	-	100	97.596	ENSCLAG00000012196	-	100	97.260	Chinchilla_lanigera
ENSOCUG00000017929	-	100	89.650	ENSCSAG00000011644	-	100	89.854	Chlorocebus_sabaeus
ENSOCUG00000017929	-	100	92.902	ENSCPBG00000012697	POLR2A	99	92.902	Chrysemys_picta_bellii
ENSOCUG00000017929	-	99	75.820	ENSCING00000007884	-	99	76.246	Ciona_intestinalis
ENSOCUG00000017929	-	94	83.333	ENSCSAVG00000008334	-	100	80.180	Ciona_savignyi
ENSOCUG00000017929	-	100	96.966	ENSCANG00000010622	-	100	96.702	Colobus_angolensis_palliatus
ENSOCUG00000017929	-	100	93.239	ENSCGRG00001003538	Polr2a	99	89.863	Cricetulus_griseus_chok1gshd
ENSOCUG00000017929	-	93	96.012	ENSCGRG00000012105	Polr2a	97	92.325	Cricetulus_griseus_crigri
ENSOCUG00000017929	-	100	93.676	ENSCSEG00000002635	polr2a	99	89.770	Cynoglossus_semilaevis
ENSOCUG00000017929	-	100	94.544	ENSCVAG00000005156	polr2a	99	90.575	Cyprinodon_variegatus
ENSOCUG00000017929	-	100	94.362	ENSDARG00000099966	polr2a	99	90.115	Danio_rerio
ENSOCUG00000017929	-	100	94.390	ENSDNOG00000016482	-	99	94.390	Dasypus_novemcinctus
ENSOCUG00000017929	-	100	97.768	ENSDORG00000008667	Polr2a	100	97.412	Dipodomys_ordii
ENSOCUG00000017929	-	99	68.774	FBgn0003277	RpII215	98	73.905	Drosophila_melanogaster
ENSOCUG00000017929	-	93	95.062	ENSETEG00000002540	-	88	95.062	Echinops_telfairi
ENSOCUG00000017929	-	99	87.898	ENSEBUG00000013967	polr2a	99	84.389	Eptatretus_burgeri
ENSOCUG00000017929	-	100	95.936	ENSEASG00005019114	-	99	95.936	Equus_asinus_asinus
ENSOCUG00000017929	-	100	97.710	ENSECAG00000018485	POLR2A	100	97.362	Equus_caballus
ENSOCUG00000017929	-	89	99.666	ENSEEUG00000001154	-	95	99.733	Erinaceus_europaeus
ENSOCUG00000017929	-	100	89.895	ENSELUG00000014284	polr2a	94	86.483	Esox_lucius
ENSOCUG00000017929	-	100	97.710	ENSFDAG00000008287	-	100	97.362	Fukomys_damarensis
ENSOCUG00000017929	-	99	94.544	ENSFHEG00000001768	polr2a	99	93.440	Fundulus_heteroclitus
ENSOCUG00000017929	-	97	90.198	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSOCUG00000017929	-	96	94.482	ENSGAFG00000005389	polr2a	99	93.378	Gambusia_affinis
ENSOCUG00000017929	-	99	90.445	ENSGACG00000019366	polr2a	100	89.686	Gasterosteus_aculeatus
ENSOCUG00000017929	-	100	95.717	ENSGGOG00000014800	-	100	95.595	Gorilla_gorilla
ENSOCUG00000017929	-	99	94.110	ENSHBUG00000018937	polr2a	99	93.010	Haplochromis_burtoni
ENSOCUG00000017929	-	100	97.710	ENSHGLG00000012381	POLR2A	100	97.362	Heterocephalus_glaber_female
ENSOCUG00000017929	-	100	97.710	ENSHGLG00100014843	POLR2A	100	97.362	Heterocephalus_glaber_male
ENSOCUG00000017929	-	100	93.800	ENSHCOG00000011874	polr2a	99	89.885	Hippocampus_comes
ENSOCUG00000017929	-	100	94.048	ENSIPUG00000002613	Polr2a	99	90.115	Ictalurus_punctatus
ENSOCUG00000017929	-	100	97.768	ENSSTOG00000001304	-	100	97.412	Ictidomys_tridecemlineatus
ENSOCUG00000017929	-	100	97.653	ENSJJAG00000013049	Polr2a	100	97.311	Jaculus_jaculus
ENSOCUG00000017929	-	80	85.418	ENSKMAG00000016343	polr2a	86	89.286	Kryptolebias_marmoratus
ENSOCUG00000017929	-	100	94.048	ENSLBEG00000027652	polr2a	99	90.460	Labrus_bergylta
ENSOCUG00000017929	-	98	86.970	ENSLACG00000012071	POLR2A	99	83.967	Latimeria_chalumnae
ENSOCUG00000017929	-	100	94.714	ENSLOCG00000013863	polr2a	99	90.230	Lepisosteus_oculatus
ENSOCUG00000017929	-	100	97.710	ENSLAFG00000008626	-	100	97.362	Loxodonta_africana
ENSOCUG00000017929	-	56	98.264	ENSMFAG00000007042	-	99	98.264	Macaca_fascicularis
ENSOCUG00000017929	-	100	97.710	ENSMMUG00000023620	-	100	97.362	Macaca_mulatta
ENSOCUG00000017929	-	100	97.310	ENSMNEG00000040407	-	99	97.310	Macaca_nemestrina
ENSOCUG00000017929	-	99	93.789	ENSMLEG00000030263	-	99	98.264	Mandrillus_leucophaeus
ENSOCUG00000017929	-	100	94.172	ENSMAMG00000003351	polr2a	99	90.230	Mastacembelus_armatus
ENSOCUG00000017929	-	100	94.110	ENSMZEG00005021429	polr2a	99	90.172	Maylandia_zebra
ENSOCUG00000017929	-	56	99.898	ENSMAUG00000021055	-	99	99.898	Mesocricetus_auratus
ENSOCUG00000017929	-	100	97.653	ENSMICG00000013372	-	100	97.311	Microcebus_murinus
ENSOCUG00000017929	-	100	91.404	ENSMOCG00000018279	Polr2a	99	90.935	Microtus_ochrogaster
ENSOCUG00000017929	-	97	93.676	ENSMMOG00000012515	polr2a	94	92.581	Mola_mola
ENSOCUG00000017929	-	100	97.252	ENSMODG00000007009	-	100	96.956	Monodelphis_domestica
ENSOCUG00000017929	-	98	94.358	ENSMALG00000008716	polr2a	97	93.256	Monopterus_albus
ENSOCUG00000017929	-	100	97.768	MGP_CAROLIEiJ_G0016587	Polr2a	100	97.362	Mus_caroli
ENSOCUG00000017929	-	100	97.768	ENSMUSG00000005198	Polr2a	100	97.362	Mus_musculus
ENSOCUG00000017929	-	100	95.724	MGP_PahariEiJ_G0017718	Polr2a	100	95.602	Mus_pahari
ENSOCUG00000017929	-	100	97.768	MGP_SPRETEiJ_G0017423	Polr2a	100	97.362	Mus_spretus
ENSOCUG00000017929	-	100	97.653	ENSMPUG00000009648	-	100	97.311	Mustela_putorius_furo
ENSOCUG00000017929	-	100	97.198	ENSMLUG00000009088	-	100	96.908	Myotis_lucifugus
ENSOCUG00000017929	-	100	97.768	ENSNGAG00000002543	Polr2a	100	97.412	Nannospalax_galili
ENSOCUG00000017929	-	100	91.507	ENSNBRG00000002005	polr2a	99	88.276	Neolamprologus_brichardi
ENSOCUG00000017929	-	100	97.083	ENSNLEG00000009460	-	100	96.203	Nomascus_leucogenys
ENSOCUG00000017929	-	96	99.346	ENSMEUG00000008611	-	96	99.346	Notamacropus_eugenii
ENSOCUG00000017929	-	91	99.621	ENSOPRG00000015116	-	99	99.684	Ochotona_princeps
ENSOCUG00000017929	-	96	99.666	ENSODEG00000017674	-	100	91.175	Octodon_degus
ENSOCUG00000017929	-	100	94.296	ENSONIG00000009231	polr2a	99	90.345	Oreochromis_niloticus
ENSOCUG00000017929	-	54	97.854	ENSOANG00000003303	-	98	97.959	Ornithorhynchus_anatinus
ENSOCUG00000017929	-	100	94.172	ENSORLG00000006431	polr2a	99	90.230	Oryzias_latipes
ENSOCUG00000017929	-	100	94.172	ENSORLG00020010235	polr2a	99	90.230	Oryzias_latipes_hni
ENSOCUG00000017929	-	100	94.172	ENSORLG00015007075	polr2a	99	90.230	Oryzias_latipes_hsok
ENSOCUG00000017929	-	99	94.282	ENSOMEG00000010713	polr2a	99	94.279	Oryzias_melastigma
ENSOCUG00000017929	-	100	97.596	ENSOGAG00000033608	-	100	97.260	Otolemur_garnettii
ENSOCUG00000017929	-	100	97.768	ENSOARG00000013874	-	100	97.768	Ovis_aries
ENSOCUG00000017929	-	100	97.002	ENSPPAG00000043734	-	99	95.348	Pan_paniscus
ENSOCUG00000017929	-	100	97.083	ENSPTRG00000008691	POLR2A	100	96.203	Pan_troglodytes
ENSOCUG00000017929	-	100	96.966	ENSPANG00000024099	-	100	96.702	Papio_anubis
ENSOCUG00000017929	-	96	84.736	ENSPKIG00000005727	polr2a	85	87.730	Paramormyrops_kingsleyae
ENSOCUG00000017929	-	96	95.261	ENSPSIG00000014006	POLR2A	100	96.117	Pelodiscus_sinensis
ENSOCUG00000017929	-	100	93.879	ENSPMGG00000019734	polr2a	99	93.440	Periophthalmus_magnuspinnatus
ENSOCUG00000017929	-	100	97.768	ENSPEMG00000012521	Polr2a	100	97.412	Peromyscus_maniculatus_bairdii
ENSOCUG00000017929	-	93	99.318	ENSPCIG00000028851	-	82	99.318	Phascolarctos_cinereus
ENSOCUG00000017929	-	99	94.482	ENSPFOG00000007890	polr2a	98	90.517	Poecilia_formosa
ENSOCUG00000017929	-	99	94.482	ENSPLAG00000007399	polr2a	98	90.517	Poecilia_latipinna
ENSOCUG00000017929	-	99	94.482	ENSPMEG00000002071	polr2a	98	90.517	Poecilia_mexicana
ENSOCUG00000017929	-	100	94.420	ENSPREG00000013122	polr2a	99	90.460	Poecilia_reticulata
ENSOCUG00000017929	-	100	97.321	ENSPPYG00000007924	-	100	97.321	Pongo_abelii
ENSOCUG00000017929	-	92	99.737	ENSPCAG00000006951	-	92	99.737	Procavia_capensis
ENSOCUG00000017929	-	100	97.020	ENSPCOG00000025260	-	100	96.224	Propithecus_coquereli
ENSOCUG00000017929	-	100	97.481	ENSPVAG00000005069	-	100	97.159	Pteropus_vampyrus
ENSOCUG00000017929	-	100	94.172	ENSPNYG00000022340	polr2a	99	90.230	Pundamilia_nyererei
ENSOCUG00000017929	-	100	94.482	ENSPNAG00000011237	polr2a	99	90.517	Pygocentrus_nattereri
ENSOCUG00000017929	-	100	97.710	ENSRNOG00000028834	Polr2a	100	97.311	Rattus_norvegicus
ENSOCUG00000017929	-	100	97.310	ENSRBIG00000002471	-	100	95.886	Rhinopithecus_bieti
ENSOCUG00000017929	-	100	97.990	ENSRROG00000029583	-	100	97.362	Rhinopithecus_roxellana
ENSOCUG00000017929	-	92	50.093	YDL140C	RPO21	99	80.180	Saccharomyces_cerevisiae
ENSOCUG00000017929	-	100	97.768	ENSSBOG00000000808	-	100	97.412	Saimiri_boliviensis_boliviensis
ENSOCUG00000017929	-	100	96.920	ENSSHAG00000002858	-	100	96.648	Sarcophilus_harrisii
ENSOCUG00000017929	-	100	94.420	ENSSFOG00015023275	polr2a	99	90.460	Scleropages_formosus
ENSOCUG00000017929	-	100	93.800	ENSSMAG00000009137	polr2a	99	89.885	Scophthalmus_maximus
ENSOCUG00000017929	-	100	94.296	ENSSDUG00000020466	polr2a	99	90.345	Seriola_dumerili
ENSOCUG00000017929	-	100	94.296	ENSSLDG00000020613	polr2a	99	90.345	Seriola_lalandi_dorsalis
ENSOCUG00000017929	-	97	93.717	ENSSARG00000005875	-	99	93.853	Sorex_araneus
ENSOCUG00000017929	-	100	94.358	ENSSPAG00000016741	polr2a	94	93.256	Stegastes_partitus
ENSOCUG00000017929	-	100	96.909	ENSSSCG00000028278	-	100	96.651	Sus_scrofa
ENSOCUG00000017929	-	98	87.454	ENSTRUG00000012320	polr2a	81	87.592	Takifugu_rubripes
ENSOCUG00000017929	-	94	92.804	ENSTNIG00000010136	polr2a	100	91.723	Tetraodon_nigroviridis
ENSOCUG00000017929	-	74	100.000	ENSTBEG00000013294	-	58	100.000	Tupaia_belangeri
ENSOCUG00000017929	-	100	95.993	ENSTTRG00000014273	-	100	95.840	Tursiops_truncatus
ENSOCUG00000017929	-	100	98.136	ENSUAMG00000014866	-	100	98.287	Ursus_americanus
ENSOCUG00000017929	-	99	93.994	ENSUMAG00000015732	-	99	100.000	Ursus_maritimus
ENSOCUG00000017929	-	66	100.000	ENSVPAG00000008842	-	77	100.000	Vicugna_pacos
ENSOCUG00000017929	-	100	97.867	ENSVVUG00000027878	-	100	97.867	Vulpes_vulpes
ENSOCUG00000017929	-	99	96.790	ENSXETG00000012465	polr2a	99	93.015	Xenopus_tropicalis
ENSOCUG00000017929	-	97	91.631	ENSXCOG00000001804	polr2a	99	91.171	Xiphophorus_couchianus
ENSOCUG00000017929	-	100	94.420	ENSXMAG00000015687	polr2a	99	90.460	Xiphophorus_maculatus