EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000023532 (Gene tree)
Gene ID: 103348387
Gene Symbol: -
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3A
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Plus strand
Length: 5508 bases
Position: chr4:84345466-84350973
Accession: 103348387
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000017941	APOBEC_N	PF08210.11	5.3e-37	1	1
ENSOCUP00000017941	APOBEC_C	PF05240.14	1.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000030283	-	1118	XM_008257028	ENSOCUP00000017941	252 (aa)	XP_008255250	G1TLT9

Gene Model

Click here to download ENSOCUG00000023532's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000023532's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000023532	-	65	45.294	ENSOCUG00000023739	AICDA	83	45.294
ENSOCUG00000023532	-	60	30.519	ENSOCUG00000028008	APOBEC2	64	32.258
ENSOCUG00000023532	-	63	39.375	ENSOCUG00000023913	-	82	39.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000023532	-	66	48.588	ENSG00000239713	APOBEC3G	86	48.588	Homo_sapiens
ENSOCUG00000023532	-	63	48.810	ENSAMEG00000010815	-	72	48.521	Ailuropoda_melanoleuca
ENSOCUG00000023532	-	76	48.241	ENSANAG00000031271	APOBEC3G	90	48.241	Aotus_nancymaae
ENSOCUG00000023532	-	68	42.697	ENSANAG00000027961	-	84	47.059	Aotus_nancymaae
ENSOCUG00000023532	-	77	43.781	ENSANAG00000028416	-	90	43.781	Aotus_nancymaae
ENSOCUG00000023532	-	90	47.881	ENSANAG00000020573	-	98	52.632	Aotus_nancymaae
ENSOCUG00000023532	-	65	45.349	ENSBTAG00000037800	-	90	45.349	Bos_taurus
ENSOCUG00000023532	-	68	48.315	ENSCJAG00000023368	APOBEC3G	86	49.419	Callithrix_jacchus
ENSOCUG00000023532	-	77	50.244	ENSCJAG00000011578	-	77	50.244	Callithrix_jacchus
ENSOCUG00000023532	-	64	40.678	ENSCAFG00000015211	-	86	40.678	Canis_familiaris
ENSOCUG00000023532	-	64	41.975	ENSCAFG00020002661	-	70	38.554	Canis_lupus_dingo
ENSOCUG00000023532	-	63	40.120	ENSCAFG00020002641	-	71	40.120	Canis_lupus_dingo
ENSOCUG00000023532	-	70	42.391	ENSCHIG00000012694	-	83	42.391	Capra_hircus
ENSOCUG00000023532	-	76	38.693	ENSCCAG00000032509	-	87	41.954	Cebus_capucinus
ENSOCUG00000023532	-	75	46.667	ENSCCAG00000032232	-	89	46.667	Cebus_capucinus
ENSOCUG00000023532	-	69	49.444	ENSCCAG00000033147	-	84	50.286	Cebus_capucinus
ENSOCUG00000023532	-	82	50.000	ENSCCAG00000030928	-	97	50.000	Cebus_capucinus
ENSOCUG00000023532	-	67	50.920	ENSCSAG00000006376	APOBEC3G	83	51.235	Chlorocebus_sabaeus
ENSOCUG00000023532	-	63	34.146	ENSDNOG00000039749	-	70	36.585	Dasypus_novemcinctus
ENSOCUG00000023532	-	68	54.494	ENSEASG00005018643	-	75	54.494	Equus_asinus_asinus
ENSOCUG00000023532	-	68	55.114	ENSECAG00000032756	-	60	55.114	Equus_caballus
ENSOCUG00000023532	-	68	52.514	ENSECAG00000022371	APOBEC3Z1B	77	52.514	Equus_caballus
ENSOCUG00000023532	-	66	49.153	ENSGGOG00000013750	APOBEC3G	88	49.153	Gorilla_gorilla
ENSOCUG00000023532	-	68	51.429	ENSLAFG00000020906	-	84	51.429	Loxodonta_africana
ENSOCUG00000023532	-	64	52.410	ENSLAFG00000008890	-	79	52.410	Loxodonta_africana
ENSOCUG00000023532	-	64	53.293	ENSLAFG00000005275	-	88	53.293	Loxodonta_africana
ENSOCUG00000023532	-	78	48.768	ENSMFAG00000044711	APOBEC3G	79	51.381	Macaca_fascicularis
ENSOCUG00000023532	-	71	51.087	ENSMMUG00000039346	APOBEC3G	88	51.087	Macaca_mulatta
ENSOCUG00000023532	-	70	51.381	ENSMNEG00000038847	APOBEC3G	86	51.381	Macaca_nemestrina
ENSOCUG00000023532	-	82	51.744	ENSMLEG00000024444	APOBEC3G	86	51.744	Mandrillus_leucophaeus
ENSOCUG00000023532	-	65	52.907	ENSMICG00000043748	-	84	52.907	Microcebus_murinus
ENSOCUG00000023532	-	65	48.000	ENSMICG00000047191	-	90	48.000	Microcebus_murinus
ENSOCUG00000023532	-	69	48.315	ENSMPUG00000013235	-	90	48.315	Mustela_putorius_furo
ENSOCUG00000023532	-	55	49.306	ENSMLUG00000000517	-	80	49.306	Myotis_lucifugus
ENSOCUG00000023532	-	63	46.626	ENSMLUG00000028652	-	69	46.914	Myotis_lucifugus
ENSOCUG00000023532	-	64	50.000	ENSMLUG00000024957	-	75	50.000	Myotis_lucifugus
ENSOCUG00000023532	-	64	55.357	ENSMLUG00000024853	-	85	55.357	Myotis_lucifugus
ENSOCUG00000023532	-	65	47.929	ENSMLUG00000014565	-	89	47.929	Myotis_lucifugus
ENSOCUG00000023532	-	64	54.167	ENSMLUG00000000977	-	79	54.167	Myotis_lucifugus
ENSOCUG00000023532	-	64	60.748	ENSMLUG00000008631	-	89	60.748	Myotis_lucifugus
ENSOCUG00000023532	-	64	51.205	ENSMLUG00000023022	-	74	51.205	Myotis_lucifugus
ENSOCUG00000023532	-	64	50.365	ENSMLUG00000026771	-	71	50.365	Myotis_lucifugus
ENSOCUG00000023532	-	63	59.524	ENSNLEG00000018922	-	87	59.524	Nomascus_leucogenys
ENSOCUG00000023532	-	67	58.382	ENSOPRG00000002326	-	91	58.382	Ochotona_princeps
ENSOCUG00000023532	-	70	53.226	ENSOGAG00000024822	-	90	53.226	Otolemur_garnettii
ENSOCUG00000023532	-	69	57.803	ENSOGAG00000032518	-	90	57.803	Otolemur_garnettii
ENSOCUG00000023532	-	65	43.605	ENSOARG00000016213	APOBEC3Z1	89	43.605	Ovis_aries
ENSOCUG00000023532	-	79	44.712	ENSPPAG00000033277	-	70	49.180	Pan_paniscus
ENSOCUG00000023532	-	70	48.387	ENSPTRG00000014387	APOBEC3G	90	48.387	Pan_troglodytes
ENSOCUG00000023532	-	69	50.000	ENSPPYG00000011833	APOBEC3G	83	51.163	Pongo_abelii
ENSOCUG00000023532	-	74	51.744	ENSPCAG00000015518	-	59	51.744	Procavia_capensis
ENSOCUG00000023532	-	70	49.171	ENSPCOG00000016357	-	88	49.171	Propithecus_coquereli
ENSOCUG00000023532	-	66	49.708	ENSPVAG00000004045	-	85	49.708	Pteropus_vampyrus
ENSOCUG00000023532	-	66	51.163	ENSRBIG00000035436	APOBEC3G	82	51.163	Rhinopithecus_bieti
ENSOCUG00000023532	-	82	48.113	ENSSBOG00000029091	-	97	48.113	Saimiri_boliviensis_boliviensis
ENSOCUG00000023532	-	75	47.423	ENSSBOG00000018208	-	91	47.208	Saimiri_boliviensis_boliviensis
ENSOCUG00000023532	-	85	44.091	ENSSBOG00000023468	-	73	45.366	Saimiri_boliviensis_boliviensis
ENSOCUG00000023532	-	76	46.231	ENSSBOG00000026566	-	90	46.231	Saimiri_boliviensis_boliviensis
ENSOCUG00000023532	-	65	45.294	ENSSBOG00000025673	-	84	45.294	Saimiri_boliviensis_boliviensis
ENSOCUG00000023532	-	80	46.078	ENSSBOG00000021384	-	93	45.894	Saimiri_boliviensis_boliviensis
ENSOCUG00000023532	-	70	48.619	ENSTTRG00000009395	-	90	48.619	Tursiops_truncatus
ENSOCUG00000023532	-	63	47.619	ENSUMAG00000002249	-	76	47.619	Ursus_maritimus
ENSOCUG00000023532	-	61	48.148	ENSUMAG00000014447	-	79	48.148	Ursus_maritimus